Ave Tooming-Klunderud

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Visiting address Blindernveien 31 None 0371 OSLO
Postal address Postboks 1066 Blindern 0316 OSLO

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Publications

  • Lie, Kai Kristoffer; Tørresen, Ole K.; Solbakken, Monica Hongrø; Rønnestad, Ivar; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jentoft, Sissel & Sæle, Øystein (2018). Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics.  ISSN 1471-2164.  19:186(1), s 1- 17 . doi: 10.1186/s12864-018-4570-8
  • Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Reinar, William Brynildsen; Grove, Harald; Miller, Jason R.; Walenz, Brian; Knight, James; Ekholm, Jenny M.; Peluso, Paul; Edvardsen, Rolf; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2017). An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics.  ISSN 1471-2164.  18, s 1- 23 . doi: 10.1186/s12864-016-3448-x Full text in Research Archive.
  • Frank, Jeremy A.; Pan, Yao; Tooming-Klunderud, Ave; Eijsink, Vincent; McHardy, Alice C; Nederbragt, Alexander Johan & Pope, Phillip (2016). Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports.  ISSN 2045-2322.  6 . doi: 10.1038/srep25373 Full text in Research Archive.
  • Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William & Davidson, William S (2016). The Atlantic salmon genome provides insights into rediploidization. Nature.  ISSN 0028-0836.  533(7602), s 200- 205 . doi: 10.1038/nature17164 Full text in Research Archive.
  • Baldo, Laura; Riera, Joan Lluis; Tooming-Klunderud, Ave; Alba, M. Mar & Salzburger, Walter (2015). Gut microbiota dynamics during dietary shift in eastern African cichlid fishes. PLoS ONE.  ISSN 1932-6203.  10(5) . doi: 10.1371/journal.pone.0127462 Full text in Research Archive.
  • Stokke, Runar; Dahle, Håkon; Roalkvam, Irene; Wissuwa, Juliane; Daae, Frida Lise; Tooming-Klunderud, Ave; Thorseth, Ingunn Hindenes; Pedersen, Rolf B. & Steen, Ida Helene (2015). Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm. Environmental Microbiology.  ISSN 1462-2912.  17(10), s 4063- 4077 . doi: 10.1111/1462-2920.12970
  • Brembu, Tore; Winge, Per; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd & Bones, Atle M. (2014). The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer. Marine Genomics.  ISSN 1874-7787.  16(1), s 17- 27 . doi: 10.1016/j.margen.2013.12.002
  • de Been, Mark; Lanza, Val F.; de Toro, Maria; Scharringa, Jelle; Dohmen, Wietske; Du, Yu; Hu, Juan; Lei, Ying; Li, Ning; Tooming-Klunderud, Ave; Heederik, Dick J. J.; Fluit, Ad C; Bonten, Marc J M; Willems, Rob J.L.; de la Cruz, Fernando & van Schaik, Willem (2014). Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages. PLoS Genetics.  ISSN 1553-7390.  10(12) . doi: 10.1371/journal.pgen.1004776 Full text in Research Archive.
  • Xiao, Xi; Sogge, Hanne; Lagesen, Karin; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd & Rohrlack, Thomas (2014). Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment. PLoS ONE.  ISSN 1932-6203.  9(8) . doi: 10.1371/journal.pone.0106510 Full text in Research Archive.
  • Sogge, Hanne; Rohrlack, Thomas; Rounge, Trine Ballestad; Sønstebø, Jørn Henrik; Tooming-Klunderud, Ave; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2013). Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix Freshwater Strains. Applied and Environmental Microbiology.  ISSN 0099-2240.  79(2), s 508- 515 . doi: 10.1128/AEM.02417-12 Full text in Research Archive. Show summary
  • Tooming-Klunderud, Ave; Sogge, Hanne; Rounge, Trine Ballestad; Nederbragt, Alexander Johan; Lagesen, Karin; Glöckner, Gernot; Hayes, Paul K; Rohrlack, Thomas & Jakobsen, Kjetill Sigurd (2013). From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between Planktothrix Strains. Applied and Environmental Microbiology.  ISSN 0099-2240.  79(21), s 6803- 6812 . doi: 10.1128/AEM.01455-13 Full text in Research Archive.
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Paulsen, Jonas; Solbakken, Monica Hongrø; Sharma, Animesh; Wetten, Ola Frang; Lanzén, Anders; Winer, Roger; Knight, James; Vogel, Jan-Hinnerk; Aken, Bronwen; Andersen, Øivind; Lagesen, Karin; Tooming-Klunderud, Ave; Edvardsen, Rolf; Kirubakaran, G. Tina; Espelund, Mari; Nepal, Chirag; Previti, A. Christopher; Karlsen, Bård Ove; Moum, Truls; Skage, Morten; Berg, Paul Ragnar; Gjøen, Tor; Kuhl, Heiner; Thorsen, Jim; Malde, Ketil; Reinhardt, Richard; Du, Lei; Johansen, Steinar Daae; Searle, Steve; Lien, Sigbjørn; Nilsen, Frank; Jonassen, Inge; Omholt, Stig W; Stenseth, Nils Christian & Jakobsen, Kjetill Sigurd (2011). The genome sequence of Atlantic cod reveals a unique immune system. Nature.  ISSN 0028-0836.  477(7363), s 207- 210 . doi: 10.1038/nature10342 Full text in Research Archive.
  • Andersen, Øivind; De Rosa, Maria Cristina; Pirolli, Davide; Tooming-Klunderud, Ave; Petersen, Petra E & André, Carl (2011). Polymorphism, selection and tandem duplication of transferrin genes in Atlantic cod (Gadus morhua) - Conserved synteny between fish monolobal and tetrapod bilobal transferrin loci. BMC Genetics.  ISSN 1471-2156.  12(51) . doi: 10.1186/1471-2156-12-51
  • Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave; Patil, Viswanath; Nederbragt, Alexander Johan; Otis, Christian; Turmel, Monique; Shalchian-Tabrizi, Kamran; Lemieux, Claude & Jakobsen, Kjetill Sigurd (2011). Genome Evolution of a Tertiary Dinoflagellate Plastid. PLoS ONE.  ISSN 1932-6203.  6(4), s e19132 . doi: 10.1371/journal.pone.0019132
  • Andersen, Øivind; Dahle, Stine Veronica Wiborg; van Nes, Solveig; Bardal, Tora; Tooming-Klunderud, Ave; Kjørsvik, Elin & Galloway, Trine Falck (2009). Differential spatio-temporal expression and functional diversification of the myogenic regulatory factors MyoD1 and MyoD2 in Atlantic halibut (Hippoglossus hippoglossus). Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology.  ISSN 1096-4959.  154(1), s 93- 101 . doi: 10.1016/j.cbpb.2009.05.009
  • Fewer, DP; Tooming-Klunderud, Ave; Jokela, J; Wahsten, M; Rouhiainen, L; Kristensen, Tom; Rohrlack, T; Jakobsen, Kjetill Sigurd & Sivonen, K (2008). Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria). Microbiology.  ISSN 1350-0872.  154, s 1007- 1014 . doi: 10.1099/mic.0.2007/016097-0
  • Tooming-Klunderud, Ave; Fewer, DP; Rohrlack, Thomas; Jokela, J; Rouhiainen, L; Sivonen, K; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2008). Evidence for positive selection acting on microcystin synthetase adenylation domains in three cyanobacterial genera. BMC Evolutionary Biology.  ISSN 1471-2148.  8 . doi: 10.1186/1471-2148-8-256
  • Tooming-Klunderud, Ave; Mikalsen, Bjørg; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2008). The mosaic structure of the mcyABC operon in Microcystis. Microbiology.  ISSN 1350-0872.  154, s 1886- 1899 . doi: 10.1099/mic.0.2007/015875-0
  • Rounge, Trine Ballestad; Rohrlack, Thomas; Tooming-Klunderud, Ave; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2007). Comparison of cyanopeptolin genes in Planktothrix, Microcystis, and Anabaena strains: Evidence for independent evolution within each genus. Applied and Environmental Microbiology.  ISSN 0099-2240.  73, s 7322- 7330 . doi: 10.1128/AEM.01475-07
  • Tooming-Klunderud, Ave; Rohrlack, Thomas; Shalchian-Tabrizi, Kamran; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2007). Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins. Microbiology.  ISSN 1350-0872.  153(5), s 1382- 1393 . doi: 10.1099/mic.0.2006/001123-0
  • Østbye, Tone-Kari K; Andersen, Øivind; Frang, Ola T; Tooming-Klunderud, Ave; Jakobsen, Kjetill S.; Yafe, Anat; Etzioni, Shulamit & Moen, Thomas (2007). Molecular cloning of the Atlantic salmon activin receptor IIB cDNA - Localization of the receptor and myostatin in vivo and in vitro in muscle cells. Gene.  ISSN 0378-1119.  403(01.feb), s 159- 169
  • Østbye, Tone-Kari K; Wetten, Ola F.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Yafe, Anat; Etzioni, Shulamit; Moen, Thomas & Andersen, Øivind (2007). Myostatin (MSTN) gene duplications in Atlantic salmon (Salmo salar): Evidence for different selective pressure on teleost MSTN-1 and -2. Gene.  ISSN 0378-1119.  403, s 159- 169 . doi: 10.1016/j.gene.2007.08.008

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  • Tørresen, Ole Kristian; Jentoft, Sissel; Star, Bastiaan; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2014). A new, high quality reference genome assembly for Atlantic cod.
  • Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Skage, Morten; Tooming-Klunderud, Ave; Hansen, Marianne Helén Selander; Jentoft, Sissel; Omholt, Stig W; Lien, Sigbjørn & Jakobsen, Kjetill Sigurd (2012). The long jump: Long distance mate pairs and long PacBio reads for the Salmon Genome Project.
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Solbakken, Monica Hongrø; Paulsen, Jonas; Lagesen, Karin; Tooming-Klunderud, Ave; Tina, Kirubakaran G.; Espelund, Mari; Skage, Morten; Berg, Paul Ragnar; Omholt, Stig W; Stenseth, Nils Christian & Jakobsen, Kjetill Sigurd (2011). The genome of Atlantic cod reveals a unique immune system.
  • Dahle, Håkon; Roalkvam, Irene; Jørgensen, Steffen Leth; Hoem, Solveig; Mitra, Suparna; Huson, Daniel; Tooming-Klunderud, Ave; Thorseth, Ingunn Hindenes; Pedersen, Rolf-Birger & Steen, Ida Helene (2010). Microbial community structure of biomats and chimney walls of the Loki’s Castle hydrothermal field at 73°N.
  • Nederbragt, Alexander Johan & Tooming-Klunderud, Ave (2010). From next generation reads to genomes: experiences gained from different genome projects.
  • Tooming-Klunderud, Ave (2010). 454 sequencing at the Norwegian Sequencing Centre: possibilities, procedures and projects.
  • Tooming-Klunderud, Ave (2010). From next generation reads to genomes: experiences gained from different genome projects.
  • Tooming-Klunderud, Ave (2010). HIgh throughput sequencing at the Norwegian Sequencing Centre: possibilities and procedures.
  • Tooming-Klunderud, Ave (2010). Planktothrix genome project - from 454 reads to interesting results.
  • Grimholt, Unni; Malmstrøm, Martin; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Jentoft, Sissel; Tooming-Klunderud, Ave; Star, Bastiaan; Skage, Morten; Gaup, Hege Junita & Jakobsen, Kjetill Sigurd (2009). The lack of cod MHC class II.
  • Grimholt, Unni; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Malmstrøm, Martin; Star, Bastiaan; Tooming-Klunderud, Ave; Skage, Morten; Jentoft, Sissel; Gaup, Hege Junita; Bakke, Hege; Solbakken, Monica Hongrø & Jakobsen, Kjetill Sigurd (2009). The cod genome project.
  • Tooming-Klunderud, Ave (2009). Cod genome project.
  • Tooming-Klunderud, Ave (2009). Library preparation for pyrosequencing.
  • Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Skage, Morten & Jakobsen, Kjetill Sigurd (2009). The Ultra-high Throughput Sequencing Platform at the University of Oslo.

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Published May 26, 2011 9:50 PM - Last modified Nov. 23, 2017 10:14 AM

Projects

No ongoing projects