Ave Tooming-Klunderud

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Phone +47-22854578
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Visiting address Blindernveien 31 0371 OSLO
Postal address Postboks 1066 Blindern 0316 OSLO

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Publications

  • Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Reinar, William Brynildsen; Grove, Harald; Miller, Jason R.; Walenz, Brian; Knight, James; Ekholm, Jenny M.; Peluso, Paul; Edvardsen, Rolf; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2017). An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics.  ISSN 1471-2164.  18:95, s 1- 23 . doi: 10.1186/s12864-016-3448-x Full text in Research Archive
  • Frank, Jeremy A.; Pan, Yao; Tooming-Klunderud, Ave; Eijsink, Vincent; McHardy, Alice C; Nederbragt, Alexander Johan & Pope, Phillip (2016). Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports.  ISSN 2045-2322.  6 . doi: 10.1038/srep25373 Full text in Research Archive
  • Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William & Davidson, William S (2016). The Atlantic salmon genome provides insights into rediploidization. Nature.  ISSN 0028-0836.  533(7602), s 200- 205 . doi: 10.1038/nature17164
  • Baldo, Laura; Riera, Joan Lluis; Tooming-Klunderud, Ave; Alba, M. Mar & Salzburger, Walter (2015). Gut microbiota dynamics during dietary shift in eastern African cichlid fishes. PLoS ONE.  ISSN 1932-6203.  10(5) . doi: 10.1371/journal.pone.0127462 Full text in Research Archive
  • Stokke, Runar; Dahle, Håkon; Roalkvam, Irene; Wissuwa, Juliane; Daae, Frida Lise; Tooming-Klunderud, Ave; Thorseth, Ingunn Hindenes; Pedersen, Rolf B. & Steen, Ida Helene (2015). Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm. Environmental Microbiology.  ISSN 1462-2912.  17(10), s 4063- 4077 . doi: 10.1111/1462-2920.12970
  • Brembu, Tore; Winge, Per; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd & Bones, Atle M. (2014). The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer. Marine Genomics.  ISSN 1874-7787.  16(1), s 17- 27 . doi: 10.1016/j.margen.2013.12.002
  • de Been, Mark; Lanza, Val F.; de Toro, Maria; Scharringa, Jelle; Dohmen, Wietske; Du, Yu; Hu, Juan; Lei, Ying; Li, Ning; Tooming-Klunderud, Ave; Heederik, Dick J. J.; Fluit, Ad C; Bonten, Marc J M; Willems, Rob J.L.; de la Cruz, Fernando & van Schaik, Willem (2014). Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages. PLoS Genetics.  ISSN 1553-7390.  10(12) . doi: 10.1371/journal.pgen.1004776 Full text in Research Archive
  • Xiao, Xi; Sogge, Hanne; Lagesen, Karin; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd & Rohrlack, Thomas (2014). Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment. PLoS ONE.  ISSN 1932-6203.  9(8) . doi: 10.1371/journal.pone.0106510 Full text in Research Archive
  • Sogge, Hanne; Rohrlack, Thomas; Rounge, Trine Ballestad; Sønstebø, Jørn Henrik; Tooming-Klunderud, Ave; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2013). Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix Freshwater Strains. Applied and Environmental Microbiology.  ISSN 0099-2240.  79(2), s 508- 515 . doi: 10.1128/AEM.02417-12 Full text in Research Archive
  • Tooming-Klunderud, Ave; Sogge, Hanne; Rounge, Trine Ballestad; Nederbragt, Alexander Johan; Lagesen, Karin; Glöckner, Gernot; Hayes, Paul K; Rohrlack, Thomas & Jakobsen, Kjetill Sigurd (2013). From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between Planktothrix Strains. Applied and Environmental Microbiology.  ISSN 0099-2240.  79(21), s 6803- 6812 . doi: 10.1128/AEM.01455-13 Full text in Research Archive
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Paulsen, Jonas; Solbakken, Monica Hongrø; Sharma, Animesh; Wetten, Ola Frang; Lanzén, Anders; Winer, Roger; Knight, James; Vogel, Jan-Hinnerk; Aken, Bronwen; Andersen, Øivind; Lagesen, Karin; Tooming-Klunderud, Ave; Edvardsen, Rolf; Kirubakaran, G. Tina; Espelund, Mari; Nepal, Chirag; Previti, A. Christopher; Karlsen, Bård Ove; Moum, Truls; Skage, Morten; Berg, Paul Ragnar; Gjøen, Tor; Kuhl, Heiner; Thorsen, Jim; Malde, Ketil; Reinhardt, Richard; Du, Lei; Johansen, Steinar Daae; Searle, Steve; Lien, Sigbjørn; Nilsen, Frank; Jonassen, Inge; Omholt, Stig W; Stenseth, Nils Christian & Jakobsen, Kjetill Sigurd (2011). The genome sequence of Atlantic cod reveals a unique immune system. Nature.  ISSN 0028-0836.  477(7363), s 207- 210 . doi: 10.1038/nature10342 Full text in Research Archive
  • Andersen, Øivind; De Rosa, Maria Cristina; Pirolli, Davide; Tooming-Klunderud, Ave; Petersen, Petra E & André, Carl (2011). Polymorphism, selection and tandem duplication of transferrin genes in Atlantic cod (Gadus morhua) - Conserved synteny between fish monolobal and tetrapod bilobal transferrin loci. BMC Genetics.  ISSN 1471-2156.  12(51) . doi: 10.1186/1471-2156-12-51
  • Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave; Patil, Viswanath; Nederbragt, Alexander Johan; Otis, Christian; Turmel, Monique; Shalchian-Tabrizi, Kamran; Lemieux, Claude & Jakobsen, Kjetill Sigurd (2011). Genome Evolution of a Tertiary Dinoflagellate Plastid. PLoS ONE.  ISSN 1932-6203.  6(4), s e19132 . doi: 10.1371/journal.pone.0019132
  • Andersen, Øivind; Dahle, Stine Veronica Wiborg; van Nes, Solveig; Bardal, Tora; Tooming-Klunderud, Ave; Kjørsvik, Elin & Galloway, Trine Falck (2009). Differential spatio-temporal expression and functional diversification of the myogenic regulatory factors MyoD1 and MyoD2 in Atlantic halibut (Hippoglossus hippoglossus). Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology.  ISSN 1096-4959.  154(1), s 93- 101 . doi: 10.1016/j.cbpb.2009.05.009
  • Fewer, DP; Tooming-Klunderud, Ave; Jokela, J; Wahsten, M; Rouhiainen, L; Kristensen, Tom; Rohrlack, T; Jakobsen, Kjetill Sigurd & Sivonen, K (2008). Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria). Microbiology.  ISSN 1350-0872.  154, s 1007- 1014 . doi: 10.1099/mic.0.2007/016097-0
  • Tooming-Klunderud, Ave; Fewer, DP; Rohrlack, Thomas; Jokela, J; Rouhiainen, L; Sivonen, K; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2008). Evidence for positive selection acting on microcystin synthetase adenylation domains in three cyanobacterial genera. BMC Evolutionary Biology.  ISSN 1471-2148.  8 . doi: 10.1186/1471-2148-8-256
  • Tooming-Klunderud, Ave; Mikalsen, Bjørg; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2008). The mosaic structure of the mcyABC operon in Microcystis. Microbiology.  ISSN 1350-0872.  154, s 1886- 1899 . doi: 10.1099/mic.0.2007/015875-0
  • Rounge, Trine Ballestad; Rohrlack, Thomas; Tooming-Klunderud, Ave; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2007). Comparison of cyanopeptolin genes in Planktothrix, Microcystis, and Anabaena strains: Evidence for independent evolution within each genus. Applied and Environmental Microbiology.  ISSN 0099-2240.  73, s 7322- 7330 . doi: 10.1128/AEM.01475-07
  • Tooming-Klunderud, Ave; Rohrlack, Thomas; Shalchian-Tabrizi, Kamran; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2007). Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins. Microbiology.  ISSN 1350-0872.  153(5), s 1382- 1393 . doi: 10.1099/mic.0.2006/001123-0
  • Østbye, Tone-Kari K; Andersen, Øivind; Frang, Ola T; Tooming-Klunderud, Ave; Jakobsen, Kjetill S.; Yafe, Anat; Etzioni, Shulamit & Moen, Thomas (2007). Molecular cloning of the Atlantic salmon activin receptor IIB cDNA - Localization of the receptor and myostatin in vivo and in vitro in muscle cells. Gene.  ISSN 0378-1119.  403(01.feb), s 159- 169
  • Østbye, Tone-Kari K; Wetten, Ola F.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Yafe, Anat; Etzioni, Shulamit; Moen, Thomas & Andersen, Øivind (2007). Myostatin (MSTN) gene duplications in Atlantic salmon (Salmo salar): Evidence for different selective pressure on teleost MSTN-1 and -2. Gene.  ISSN 0378-1119.  403, s 159- 169 . doi: 10.1016/j.gene.2007.08.008

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  • Tørresen, Ole Kristian; Jentoft, Sissel; Star, Bastiaan; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2014). A new, high quality reference genome assembly for Atlantic cod.
  • Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Skage, Morten; Tooming-Klunderud, Ave; Hansen, Marianne Helén Selander; Jentoft, Sissel; Omholt, Stig W; Lien, Sigbjørn & Jakobsen, Kjetill Sigurd (2012). The long jump: Long distance mate pairs and long PacBio reads for the Salmon Genome Project.
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Solbakken, Monica Hongrø; Paulsen, Jonas; Lagesen, Karin; Tooming-Klunderud, Ave; Tina, Kirubakaran G.; Espelund, Mari; Skage, Morten; Berg, Paul Ragnar; Omholt, Stig W; Stenseth, Nils Christian & Jakobsen, Kjetill Sigurd (2011). The genome of Atlantic cod reveals a unique immune system.
  • Dahle, Håkon; Roalkvam, Irene; Jørgensen, Steffen Leth; Hoem, Solveig; Mitra, Suparna; Huson, Daniel; Tooming-Klunderud, Ave; Thorseth, Ingunn Hindenes; Pedersen, Rolf-Birger & Steen, Ida Helene (2010). Microbial community structure of biomats and chimney walls of the Loki’s Castle hydrothermal field at 73°N.
  • Nederbragt, Alexander Johan & Tooming-Klunderud, Ave (2010). From next generation reads to genomes: experiences gained from different genome projects.
  • Tooming-Klunderud, Ave (2010). 454 sequencing at the Norwegian Sequencing Centre: possibilities, procedures and projects.
  • Tooming-Klunderud, Ave (2010). From next generation reads to genomes: experiences gained from different genome projects.
  • Tooming-Klunderud, Ave (2010). HIgh throughput sequencing at the Norwegian Sequencing Centre: possibilities and procedures.
  • Tooming-Klunderud, Ave (2010). Planktothrix genome project - from 454 reads to interesting results.
  • Grimholt, Unni; Malmstrøm, Martin; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Jentoft, Sissel; Tooming-Klunderud, Ave; Star, Bastiaan; Skage, Morten; Gaup, Hege Junita & Jakobsen, Kjetill Sigurd (2009). The lack of cod MHC class II.
  • Grimholt, Unni; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Malmstrøm, Martin; Star, Bastiaan; Tooming-Klunderud, Ave; Skage, Morten; Jentoft, Sissel; Gaup, Hege Junita; Bakke, Hege; Solbakken, Monica Hongrø & Jakobsen, Kjetill Sigurd (2009). The cod genome project.
  • Tooming-Klunderud, Ave (2009). Cod genome project.
  • Tooming-Klunderud, Ave (2009). Library preparation for pyrosequencing.
  • Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Skage, Morten & Jakobsen, Kjetill Sigurd (2009). The Ultra-high Throughput Sequencing Platform at the University of Oslo.

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Published May 26, 2011 9:50 PM - Last modified Oct. 23, 2013 11:13 AM

Projects

No ongoing projects