Halfdan Rydbeck

Image of Halfdan Rydbeck
Phone +47-22855611
Room 3428
Username
Visiting address Blindernveien 31 None 0371 OSLO
Postal address Postboks 1066 Blindern 0316 OSLO

Academic interests

I am a bioinformatician at The Norwegian Sequencing Centre (NSC). I am working with initial processing of sequencing data and delivery to users.  A Laboratory Information Managements System (LIMS) together with scripts for automation are tools used to achieve this. I am also occupied with implementing new analysis pipelines and contributing to downstream analysis of sequencing projects. Before starting at CEES I was working to attain my PhD degree. The projects dealt with the joint analysis of multiple types of genomics and epigenomic datasets from human samples. Existing software were tried out for the purpose and new tools were developed in the statistical programming language R. Altogether, copynumber, promoter-methylation, gene-expression and histone modification data sets were analysed.

Publications

  • Rydbeck, Halfdan; Sandve, Geir Kjetil F.; Ferkingstad, Egil; Simovski, Boris; Rye, Morten Beck & Hovig, Johannes Eivind (2015). ClusTrack: Feature extraction and similarity measures for clustering of genome-wide data sets. PLoS ONE.  ISSN 1932-6203.  10(4) . doi: 10.1371/journal.pone.0123261 Full text in Research Archive
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard; Paulsen, Jonas; Rydbeck, Halfdan; Trengereid, Kai; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Kalaš, Matúš; Lien, Tonje Gulbrandsen; Rye, Morten Beck; Frigessi, Arnoldo & Hovig, Johannes Eivind (2013). The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Research.  ISSN 0305-1048.  41(W1), s W133- W141 . doi: 10.1093/nar/gkt342 Full text in Research Archive
  • Kresse, Stine Henrichson; Rydbeck, Halfdan; Skårn, Magne; Namløs, Heidi Maria; Barragan Polania, Ana H.; Cleton-Jansen, Anne-Marie; Serra, Massimo; Liestøl, Knut; Hogendoorn, Pancras C. W.; Hovig, Eivind; Myklebost, Ola & Meza-Zepeda, Leonardo Andrés (2012). Integrative Analysis Reveals Relationships of Genetic and Epigenetic Alterations in Osteosarcoma. PLoS ONE.  ISSN 1932-6203.  7(11) . doi: 10.1371/journal.pone.0048262
  • Kuijjer, Marieke L.; Rydbeck, Halfdan; Kresse, Stine Henrichson; Buddingh, Emilie P.; Lid, Ana Heslanyeth Barragan Polani; Roelofs, Helene; Bürger, Horst; Myklebost, Ola; Hogendoorn, Pancras C. W.; Meza, Leonardo Zepeda & Cleton-Jansen, Anne-Marie (2012). Identification of osteosarcoma driver genes by integrative analysis of copy number and gene expression data. Genes, Chromosomes and Cancer.  ISSN 1045-2257.  51(7), s 696- 706 . doi: 10.1002/gcc.21956
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit; Liestøl, Knut; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Johansen, Morten; Nygaard, Vegard; Tøstesen, Eivind; Frigessi, Arnoldo & Hovig, Eivind (2011). The differential disease regulome . BMC Genomics.  ISSN 1471-2164.  12, s 353 . doi: 10.1186/1471-2164-12-353
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit; Liestøl, Knut; Clancy, Trevor; Ferkingstad, Egil; Johansen, Morten; Nygaard, Vegard; Tøstesen, Eivind; Frigessi, Arnoldo & Hovig, Eivind (2010). The Genomic HyperBrowser: inferential genomics at the sequence level . Genome Biology.  ISSN 1465-6906.  11(12) . doi: 10.1186/gb-2010-11-12-r121 Full text in Research Archive
  • Kresse, Stine Henrichson; Szuhai, K; Heslanyeth Barragan Polania, Ana; Rydbeck, Kjell Erik Halfdan; Cleton-Jansen, A. M.; Myklebost, Ola & Meza, Leonardo Zepeda (2010). Evaluation of high-resolution microarray platforms for genomic profiling of bone tumours. BMC Research Notes.  ISSN 1756-0500.  3, s 223 . doi: 10.1186/1756-0500-3-223
  • Lantieri, Francesca; Rydbeck, Kjell Erik Halfdan; Griseri, Paola; Ceccherini, Isabella & Devoto, Marcella (2007). Incorporating prior biological information in linkage studies increases power and limits multiple testing. BMC Proceedings.  ISSN 1753-6561.  s 1- 6
  • Devoto, Marcella; Spotila, Loretta D.; Stabley, Deborah L.; Wharton, Gina N.; Rydbeck, Halfdan; Korkko, Jarmo; Kosich, Richard; Prockop, Darwin & Tenenhouse, Alan (2005). Univariate and bivariate variance component linkage analysis of a whole-genome scan for loci contributing to bone mineral density. European Journal of Human Genetics.  ISSN 1018-4813.  13, s 781- 788 . doi: 10.1038/sj.ejhg.5201411

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  • Eide, Marta; Puntervoll, Pål; Lille-Langøy, Roger; Goldstone, Jared V.; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Rydbeck, Halfdan; Jakobsen, Kjetill Sigurd; Stegeman, John; Goksøyr, Anders & Karlsen, Odd Andre (2016). Chemical warfare in the marine environment: genomic survey of the Atlantic cod (Gadus morhua) defensome reveals the absence of an important xenosensor.
  • Kresse, Stine Henrichson; Rydbeck, Halfdan; Heslanyeth Barragan Polania, Ana; Duim, Ronald A.J.; Cleton-Jansen, Anne-Marie; Myklebost, Ola & Meza, Leonardo Zepeda (2010). Integrative analysis of genome-wide genetic and epigenetic changes in human osteosarcomas. European Journal of Cancer.  ISSN 0959-8049.  8(5), s 200- 200

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Published Jan. 8, 2015 4:10 PM - Last modified Apr. 25, 2017 1:55 PM