Bernd Thiede

Image of Bernd Thiede
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Phone +47-22840533
Room 2128A
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Visiting address Blindernveien 31 0371 OSLO
Postal address Postboks 1066 Blindern 0316 OSLO

Academic interests

Mass spectrometry-based proteomics

Courses taught

Background

Proteomics

Awards

Appointments

Positions held

Partners

 

Tags: Proteomics, Mass spectrometry, Molecular Biology, Biochemistry, Proteomikk, Massespektrometri

Publications

1. Arntzen, M.O., Thiede, B. (2012) ApoptoProteomics: An integrated database for analysis of proteomics data obtained from apoptotic cells. Mol. Cell. Proteomics, 11, M111.010447.

2. Arntzen, M.Ø., Bull, V.H., Thiede, B. (2013) Cell Death Proteomics Database. J. Proteome Res., 5, 2206-2213.

3. Koehler, C.J., Arntzen, M.Ø., de Souza, G.A., Thiede, B. (2013) An approach for triplex-isobaric peptide termini labeling (Triplex-IPTL). Anal. Chem., 85, 2478-2485.

4. Størvold, G.L., Landskron, J., Strozynski, M., Arntzen, M.O., Koehler, C.J., Kalland, M.E., Taskén, K., Thiede, B. (2013) Quantitative profiling of tyrosine phosphorylation revealed changes in the activity of the T cell receptor signaling pathway upon cisplatin-induced apoptosis. J. Proteomics, 91, 344-357.

5. Thiede, B., Koehler, C.J., Strozynski, M., Treumann, A., Stein, R., Zimny-Arndt, U., Schmid, M., Jungblut, P.R. (2013) High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture (SILAC), two-dimensional gel electrophoresis (2DE) and nano-liquid chromatography coupled to an LTQ-Orbitrap mass spectrometer. Mol. Cell. Proteomics, 12, 529-538.

  • Aqrawi, Lara Adnan; Galtung, Hilde; Vestad, Beate; Øvstebø, Reidun; Thiede, Bernd; Rusthen, Shermin; Young, Alix; Guerreiro, Eduarda; Utheim, Tor Paaske; Chen, Xiangjun; Utheim, Øygunn Aass; Palm, Øyvind & Jensen, Janicke Liaaen (2017). Identification of potential saliva and tear biomarkers in primary Sjögren’s syndrome, utilising the extraction of extracellular vesicles and proteomics analysis. Arthritis Research & Therapy.  ISSN 1478-6362.  19(1) . doi: 10.1186/s13075-017-1228-x
  • Barfeld, Stefan Jörg; Urbanucci, Alfonso; Itkonen, Harri; Fazli, Ladan; Hicks, Jessica L.; Thiede, Bernd; Rennie, Paul S.; Yegnasubramanian, Srinivasan; DeMarzo, Angelo M. & Mills, Ian Geoffrey (2017). c-Myc antagonises the transcriptional activity of the androgen receptor in prostate cancer affecting key gene networks. EBioMedicine.  ISSN 2352-3964.  18, s 83- 93 . doi: 10.1016/j.ebiom.2017.04.006
  • Grundt, Kirsten; Thiede, Bernd & Østvold, Anne Carine (2017). Identification of kinases phosphorylating 13 sites in the nuclear, DNA-binding protein NUCKS. Biochimica et Biophysica Acta - Proteins and Proteomics.  ISSN 1570-9639.  1865(3), s 359- 369 . doi: 10.1016/j.bbapap.2016.12.009
  • Haatveit, Hanne Merethe; Wessel, Øystein; Markussen, Turhan; Lund, Morten; Thiede, Bernd; Nyman, Ingvild Berg; Braaen, Stine; Dahle, Maria Krudtaa & Rimstad, Espen (2017). Viral protein kinetics of piscine orthoreovirus infection in atlantic salmon blood cells. Viruses.  ISSN 1999-4915.  9:49(3), s 1- 18 . doi: 10.3390/v9030049 Full text in Research Archive.
  • Koehler, Christian; Bollineni, Ravi Chand & Thiede, Bernd (2017). Application of the half decimal place rule to increase the peptide identification rate. Rapid Communications in Mass Spectrometry.  ISSN 0951-4198.  31(2), s 227- 233 . doi: 10.1002/rcm.7780
  • Lopez Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas M. (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle.  ISSN 1538-4101.  16(10), s 947- 956 . doi: 10.1080/15384101.2017.1310350
  • Stakkestad, Øystein; Lyngstadaas, Ståle Petter; Thiede, Bernd; Vondrasesek, Jiri; Skålhegg, Bjørn Steen & Reseland, Janne Elin (2017). Phosphorylation Modulates Ameloblastin Self-assembly and Ca2+ Binding. Frontiers in Physiology.  ISSN 1664-042X.  8 . doi: 10.3389/fphys.2017.00531
  • Tran, Trung; Bollineni, Ravi Chand; Strozynski, Margarita Anna; Koehler, Christian & Thiede, Bernd (2017). Identification of Alternative Splice Variants Using Unique Tryptic Peptide Sequences for Database Searches. Journal of Proteome Research.  ISSN 1535-3893.  16(7), s 2571- 2578 . doi: 10.1021/acs.jproteome.7b00126
  • Tran, Trung; Strozynski, Margarita Anna & Thiede, Bernd (2017). Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells. Proteomics.  ISSN 1615-9853.  17(11) . doi: 10.1002/pmic.201600470
  • Fiorito, Elisa; Sharma, Yogita; Gilfillan, Siv; Wang, Shixiong; Singh, Sachin Kumar; Somisetty, Venkata Satheesh; Madhumohan, Katika; Urbanucci, Alfonso; Thiede, Bernd; Mills, Ian Geoffrey & Rodriguez, Antoni Hurtado (2016). CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions. Nucleic Acids Research.  ISSN 0305-1048.  44, s 10588- 10602 . doi: 10.1093/nar/gkw785
  • Gerner, Lisa; Munack, Steffi; Temmerman, Koen; Lawrence-Dörner, Ann-Marie; Besir, Huseyin; Wilmanns, Matthias; Jensen, Jan Kristian; Thiede, Bernd; Mills, Ian Geoffrey & Morth, Jens Preben (2016). Data for the co-expression and purification of human recombinant CaMKK2 in complex with calmodulin in Escherichia coli. Data in Brief.  ISSN 2352-3409.  8, s 733- 740 . doi: 10.1016/j.dib.2016.06.033
  • Gerner, Lisa; Munack, Steffi; Temmerman, Koen; Lawrence-Dörner, Ann-Marie; Besir, Huseyin; Wilmanns, Matthias; Jensen, Jan Kristian; Thiede, Bernd; Mills, Ian Geoffrey & Morth, Jens Preben (2016). Using the fluorescent properties of STO-609 as a tool to assist structure-function analyses of recombinant CaMKK2. Biochemical and Biophysical Research Communications - BBRC.  ISSN 0006-291X.  476(2), s 102- 107 . doi: 10.1016/j.bbrc.2016.05.045
  • Olsen, Christel Moræus; Markussen, Turhan; Thiede, Bernd & Rimstad, Espen (2016). Infectious Salmon Anaemia Virus (ISAV) RNA Binding Protein Encoded by Segment 8 ORF2 and Its Interaction with ISAV and Intracellular Proteins. Viruses.  ISSN 1999-4915.  8(2) . doi: 10.3390/v8020052 Full text in Research Archive.
  • Albrecht, Elke; Norheim, Frode; Thiede, Bernd; Holen, Torgeir; Ohashi, Tomoo; Schering, Lisa; Lee, Sindre; Brenmoehl, Julia; Thomas, Selina; Drevon, Christian A; Erickson, Harold P & Maak, Steffen (2015). Irisin - A myth rather than an exercise-inducible myokine. Scientific Reports.  ISSN 2045-2322.  5 . doi: 10.1038/srep08889
  • Albrecht, Elke; norheim, frode; Thiede, Bernd; Lee, Sindre; Holen, Torgeir; Ohashi,, Tomoo; Schering, Lisa; Brenmoehl, Julia; Thomas, Selina; Drevon, Christian A; Erickson, Harold P & Maak, Steffen (2015). Irisin – a myth rather than an exercise-inducible myokine. Scientific Reports.  ISSN 2045-2322. . doi: 10.1038/srep08889
  • Arntzen, Magnus Øverlie; Boddie, Paul; Frick, Rahel; Koehler, Christian & Thiede, Bernd (2015). Consolidation of proteomics data in the Cancer proteomics database. Proteomics.  ISSN 1615-9853.  15(22), s 3765- 3771 . doi: 10.1002/pmic.201500144
  • Bollineni, Ravi Chand; Guldvik, Ingrid Jenny; Grönberg, Henrik; Wiklund, Fredrik; Mills, Ian Geoffrey & Thiede, Bernd (2015). A differential protein solubility approach for the depletion of highly abundant proteins in plasma using ammonium sulfate. The Analyst.  ISSN 0003-2654.  140(24), s 8109- 8117 . doi: 10.1039/c5an01560j
  • Bousquet, Paula; Sandvik, Joe Alexander; Arntzen, Magnus Øverlie; Jeppesen Edin, Nina F; Christoffersen, Stine; Krengel, Ute; Pettersen, Erik O & Thiede, Bernd (2015). Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells. International Journal of Proteomics.  ISSN 2090-2174. . doi: 10.1155/2015/678527
  • Chymkowitch, Pierre; Nguéa P, Aurélie; Aanes, Håvard; Koehler, Christian; Thiede, Bernd; Lorenz, Susanne; Meza, Leonardo Zepeda; Klungland, Arne & Enserink, Jorrit (2015). Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes. Genome Research.  ISSN 1088-9051.  25(6), s 897- 906 . doi: 10.1101/gr.185793.114
  • Koehler, Christian; Arntzen, Magnus Øverlie & Thiede, Bernd (2015). The impact of carbon-13 and deuterium on relative quantification of proteins using stable isotope diethyl labeling. Rapid Communications in Mass Spectrometry.  ISSN 0951-4198.  29(9), s 830- 836 . doi: 10.1002/rcm.7170
  • Serguienko, Anastassia; Grad, Iwona; Wennerstrøm, Anna; Meza, Leonardo Zepeda; Thiede, Bernd; Stratford, Eva Wessel; Myklebost, Ola & Munthe, Else (2015). Metabolic reprogramming of metastatic breast cancer and melanoma by Let-7a microRNA. OncoTarget.  ISSN 1949-2553.  6(4), s 2451- 2465 . doi: 10.18632/oncotarget.3235
  • Villa, Oscar; Brookes, Steven J; Thiede, Bernd; Heijl, Lars; Lyngstadaas, Ståle Petter & Reseland, Janne Elin (2015). Subfractions of enamel matrix derivative differentially influence cytokine secretion from human oral fibroblasts. Journal of Tissue Engineering.  ISSN 2041-7314.  6, s 1- 11 . doi: 10.1177/2041731415575857 Full text in Research Archive. Show summary
  • Øverbye, Anders; Skotland, Tore; Koehler, Christian; Thiede, Bernd; Seierstad, Therese; Berge, Viktor; Sandvig, Kirsten & Llorente, Alicia (2015). Identification of prostate cancer biomarkers in urinary exosomes. OncoTarget.  ISSN 1949-2553.  6(30), s 30357- 30376 . doi: 10.18632/oncotarget.4851
  • Frank, Matthias Johannes; Walter, Martin Sebastian; Rubert, Marina; Thiede, Bernd; Monjo Cabrer, Marta; Reseland, Janne Elin; Haugen, Håvard Jostein & Lyngstadaas, Ståle Petter (2014). Cathodic polarization coats titanium based implant materials with enamel matrix derivate (EMD). Materials.  ISSN 1996-1944.  7(3), s 2210- 2228 . doi: 10.3390/ma7032210 Full text in Research Archive. Show summary
  • Glowinski, Frithjof; Holland, Carsten; Thiede, Bernd; Jungblut, Peter R. & Meyer, Thomas (2014). Analysis of T4SS-induced signaling by H. pylori using quantitative phosphoproteomics. Frontiers in Microbiology.  ISSN 1664-302X.  5(JULY) . doi: 10.3389/fmicb.2014.00356
  • Haaland, Ingvild; Opsahl, Jill Anette; Berven, Frode; Reikvam, Håkon; Fredly, Hanne Kristin; Haugse, Ragnhild; Thiede, Bernd; McCormack, Emmet; Lain, Sonia; Bruserud, Øystein & Gjertsen, Bjørn Tore (2014). Molecular mechanisms of nutlin-3 involve acetylation of p53, histones and heat shock proteins in acute myeloid leukemia. Molecular Cancer.  ISSN 1476-4598.  13(1:116) . doi: 10.1186/1476-4598-13-116 Full text in Research Archive.
  • Oldenburg Ruppelt, Anja; Delbarre, Erwan; Thiede, Bernd; Vigouroux, Corinne & Collas, Philippe (2014). Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes. Human Molecular Genetics.  ISSN 0964-6906.  23(5), s 1151- 1162 . doi: 10.1093/hmg/ddt509
  • Pavlovic-Kozjak, Vera; Prell, F; Thiede, Bernd; Gotz, M; Wosiek, D; Ott, C & Rudel, T (2014). C1orf163/RESA1 is a novel mitochondrial intermembrane space protein connected to respiratory chain assembly. Journal of Molecular Biology.  ISSN 0022-2836.  426(4), s 908- 920 . doi: 10.1016/j.jmb.2013.12.001
  • Arczewska, Katarzyna; Tomazella, Gisele Guicardi; Lindvall, Jessica M.; Kassahun, Henok; Maglioni, Silvia; Torgovnick, Alessandro; Henriksson, Johan; Matilainen, Olli; Marquis, Bryce J.; Nelson, Bryant C.; Jaruga, Pawel; Babaie, Eshrat; Holmberg, Carina; Burglin, Thomas R.; Ventura, Natascia; Thiede, Bernd & Nilsen, Hilde (2013). Active Transcriptomic and Proteomic Reprogramming in the C. elegans Nucleotide Excision Repair Mutant xpa-1. Nucleic Acids Research.  ISSN 0305-1048.  41(10), s 5368- 5381 . doi: 10.1093/nar/gkt225
  • Arntzen, Magnus; Bull, Vibeke Hervik & Thiede, Bernd (2013). Cell Death Proteomics Database: Consolidating proteomics data on cell death. Journal of Proteome Research.  ISSN 1535-3893.  12(5), s 2206- 2213 . doi: 10.1021/pr4000703
  • Callaway, A.; Kostrzewa, M.; Willershausen, B.; Schmidt, F.; Thiede, Bernd; Küpper, H. & Kneist, S. (2013). Identification of Lactobacilli from Deep Carious Lesions by Means of Species-Specific PCR and MALDI-TOF Mass Spectrometry. Clinical Laboratory.  ISSN 1433-6510.  59(11-12), s 1373- 1379 . doi: 10.7754/Clin.Lab.2013.121225
  • Koehler, Christian; Arntzen, Magnus; De Souza, Gustavo Antonio & Thiede, Bernd (2013). An Approach for Triplex-Isobaric Peptide Termini Labeling (Triplex-IPTL). Analytical Chemistry.  ISSN 0003-2700.  85(4), s 2478- 2485 . doi: 10.1021/ac3035508
  • Moltu, Kristine; Bjørgo, Elisa; Berge, Torunn; Thiede, Bernd & Tasken, Kjetil (2013). A Proteomic Approach to Screening of Dynamic Changes in Detergent-Resistant Membranes from Activated Human Primary T Cells. Journal of Proteomics & Bioinformatics.  ISSN 0974-276X.  6, s 72- 80 . doi: 10.4172/jpb.1000264
  • Murrell, Wayne; Palmero, Emily Herrera; Bianco, John; Stangeland, Biljana; Joel, Mrinal; Paulson, Linda Marie; Thiede, Bernd; Grieg, Zanina Zilic; Ramsnes, Ingunn; Skjellegrind, Håvard Kjesbu; Nygård, Ståle; Brandal, Petter; Sandberg, Cecilie; Vik-Mo, Einar O.; Palmero, Sheryl & Langmoen, Iver Arne (2013). Expansion of Multipotent Stem Cells from the Adult Human Brain. PLoS ONE.  ISSN 1932-6203.  8(8) . doi: 10.1371/journal.pone.0071334
  • Størvold, Gro Leite; Landskron, Johannes; Strozynski, Margarita Anna; Arntzen, Magnus; Koehler, Christian; Kalland, Maria Elisabeth; Tasken, Kjetil & Thiede, Bernd (2013). Quantitative profiling of tyrosine phosphorylation revealed changes in the activity of the T cell receptor signaling pathway upon cisplatin-induced apoptosis. Journal of Proteomics.  ISSN 1874-3919.  91, s 344- 357 . doi: 10.1016/j.jprot.2013.07.019
  • Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, Achim; Stein, Robert; Zimny-Arndt, Ursula; Schmid, Monika & Jungblut, Peter R. (2013). High Resolution Quantitative Proteomics of HeLa Cells Protein Species Using Stable Isotope Labeling with Amino Acids in Cell Culture(SILAC), Two-Dimensional Gel Electrophoresis(2DE) and Nano-Liquid Chromatograpohy Coupled to an LTQ-OrbitrapMass Spectrometer. Molecular & Cellular Proteomics.  ISSN 1535-9476.  12(2), s 529- 538 . doi: 10.1074/mcp.M112.019372
  • Tomazella, Gisele Guiqardi; Risberg, Kine; Mylvaganam, Haima; Lindemann, Paul Christoffer; Thiede, Bernd; De Souza, Gustavo Antonio & Wiker, Harald G (2012). Proteomic analysis of a multi-resistant clinical Escherichia coli isolate of unknown genomic background. Journal of Proteomics.  ISSN 1874-3919.  75(6), s 1830- 1837 . doi: 10.1016/j.jprot.2011.12.024
  • Arntzen, Magnus & Thiede, Bernd (2012). ApoptoProteomics, an Integrated Database for Analysis of Proteomics Data Obtained from Apoptotic Cells. Molecular & Cellular Proteomics.  ISSN 1535-9476.  11(2) . doi: 10.1074/mcp.M111.010447
  • Bull, Vibeke Hervik; Rajalingam, Krishnaraj & Thiede, Bernd (2012). Sorafenib-Induced Mitochondrial Complex I Inactivation and Cell Death in Human Neuroblastoma Cells. Journal of Proteome Research.  ISSN 1535-3893.  11(3), s 1609- 1620 . doi: 10.1021/pr200790e
  • Bull, Vibeke Hervik & Thiede, Bernd (2012). Proteome analysis of tunicamycin-induced ER stress. Electrophoresis.  ISSN 0173-0835.  33(12), s 1814- 1823 . doi: 10.1002/elps.201100565
  • Imre, Gergely; Heering, Jan; Takeda, Armelle-Natsuo; Husmann, Matthias; Thiede, Bernd; Heringdorf, Dagmar Meyer zu; Green, Douglas R; van der Goot, F Gisou; Sinha, Bhanu; Dötsch, Volker & Rajalingam, Krishnaraj (2012). Caspase-2 is an initiator caspase responsible for pore-forming toxin-mediated apoptosis. EMBO Journal.  ISSN 0261-4189.  31(11), s 2615- 2628 . doi: 10.1038/emboj.2012.93
  • Khan, R; Rukke, HV; Ricomini, AP; Fimland, G; Arntzen, Magnus; Thiede, Bernd & Petersen, Fernanda Cristina (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology.  ISSN 0021-9193.  194(15), s 3781- 3788 . doi: 10.1128/JB.00624-12
  • Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). A Rapid Approach for Isobaric Peptide Termini Labeling. Methods in Molecular Biology.  ISSN 1064-3745.  893, s 129- 141 . doi: 10.1007/978-1-61779-885-6_10
  • Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Analytical and Bioanalytical Chemistry.  ISSN 1618-2642.  404(4), s 1103- 1114 . doi: 10.1007/s00216-012-5949-z
  • Ott, Christine; Ross, Katharina; Straub, Sebastian; Thiede, Bernd; Götz, Monika; Goosmann, Christian; Krischke, Markus; Mueller, Martin J.; Krohne, Georg; Rudel, Thomas & Kozjak-Pavlovic, Vera (2012). Sam50 Functions in Mitochondrial Intermembrane Space Bridging and Biogenesis of Respiratory Complexes. Molecular and Cellular Biology.  ISSN 0270-7306.  32(6), s 1173- 1188 . doi: 10.1128/MCB.06388-11
  • Patron, Juan P.; Fendler, Annika; Bild, Matthias; Jung, Ulrike; Müller, Henrik; Arntzen, Magnus; Piso, Chloe; Stephan, Carsten; Thiede, Bernd; Mollenkopf, Hans-Joachim; Jung, Klaus; Kaufmann, Stefan H.E. & Schreiber, Jörg (2012). MiR-133b Targets Antiapoptotic Genes and Enhances Death Receptor-Induced Apoptosis. PLoS ONE.  ISSN 1932-6203.  7(4) . doi: 10.1371/journal.pone.0035345
  • Tomazella, Gisele Guicardi; Kassahun, Henok; Nilsen, Hilde & Thiede, Bernd (2012). Quantitative Proteome Analysis Reveals RNA Processing Factors As Modulators of Ionizing Radiation-Induced Apoptosis in the C. elegans Germline. Journal of Proteome Research.  ISSN 1535-3893.  11(8), s 4277- 4288 . doi: 10.1021/pr300386z
  • Arntzen, Magnus; Koehler, Christian; Barsnes, Harald; Berven, Frode; Treumann, Achim & Thiede, Bernd (2011). IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT. Journal of Proteome Research.  ISSN 1535-3893.  10(2), s 913- 920 . doi: 10.1021/pr1009977
  • Arntzen, Magnus; Koehler, Christian; Treumann, Achim & Thiede, Bernd (2011). Quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Methods in Molecular Biology.  ISSN 1064-3745.  753, s 65- 76 . doi: 10.1007/978-1-61779-148-2_5
  • Arntzen, Magnus & Thiede, Bernd (2011). ApoptoProteomics: An integrated database for analysis of proteomics data obtained from apoptotic cells. Molecular & Cellular Proteomics.  ISSN 1535-9476.  10(12) . doi: 10.1074/mcp.M111.010447
  • De Souza, Gustavo; Arntzen, Magnus Øverlie; Fortuin, Suereta; Schürch, Anita; Målen, Hiwa; McEvoy, Christopher R; Van Soolingen, Dick; Thiede, Bernd; Warren, Robin M & Wiker, Harald G (2011). Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database. Molecular & Cellular Proteomics.  ISSN 1535-9476.  10(1) . doi: 10.1074/mcp.M110.002527 Full text in Research Archive.
  • Koehler, Christian; Arntzen, Magnus; Strozynski, Margarita Anna; Treumann, Achim & Thiede, Bernd (2011). Isobaric Peptide Termini Labeling Utilizing Site-Specific N-Terminal Succinylation. Analytical Chemistry.  ISSN 0003-2700.  83(12), s 4775- 4781 . doi: 10.1021/ac200229w
  • Kolberg, Jan Isak; Ihle, Øistein; Thiede, Bernd & Aase, Audun (2011). Polyreactivity of Monoclonal Antibodies Made Against Human Erythrocyte Membranes with Various Pathogenic Bacteria. Hybridoma.  ISSN 0272-457X.  30(1), s 1- 9 . doi: 10.1089/hyb.2010.0062
  • Korvald, Hanne; Moe, Anne Margrethe Mølstad; Cederkvist, Fritjof Henning; Thiede, Bernd; Lærdahl, Jon Kristen; Bjørås, Magnar & Alseth, Ingrun (2011). Schizosaccharomyces pombe Ofd2 Is a Nuclear 2-Oxoglutarate and Iron Dependent Dioxygenase Interacting with Histones. PLoS ONE.  ISSN 1932-6203.  6(9) . doi: 10.1371/journal.pone.0025188
  • Kozielski, Frank; Riaz, Tahira; DeBonis, Salvatore; Koehler, Christian; Panse, Isabel; Strozynski, Margarita Anna; Donaldson, Ian Matthew; Thiede, Bernd & Kroening, Mario (2011). Proteome analysis of microtubule-associated proteins and their interacting partners from mammalian brain. Amino Acids.  ISSN 0939-4451.  41(2), s 363- 385 . doi: 10.1007/s00726-010-0649-5
  • Norheim, Frode; Raastad, Truls; Thiede, Bernd; Rustan, Arild; Drevon, Christian A & Haugen, Fred (2011). Proteomic identification of secreted proteins from human skeletal muscle cells and expression in response to strength training. American Journal of Physiology. Endocrinology and Metabolism.  ISSN 0193-1849.  301(5), s E1013- E1021 . doi: 10.1152/ajpendo.00326.2011
  • Saunders, Threrese Solstad; Bains, Simer Jit; Landskron, Johannes; Aandahl, Einar Martin; Thiede, Bernd; Tasken, Kjetil & Torgersen, Knut Martin (2011). CD147 (Basigin/Emmprin) identifies FoxP3(+)CD45RO(+)CTLA4(+)-activated human regulatory T cells. Blood.  ISSN 0006-4971.  118(19), s 5141- 5151 . doi: 10.1182/blood-2011-02-339242 Show summary
  • Schmidt, Frank; Dahlmann, Burkhardt; Hustoft, Hanne Kolsrud; Koehler, Christian; Strozynski, Margarita Anna; Kloss, Alexander; Zimny-Arndt, Ursula; Jungblut, Peter R. & Thiede, Bernd (2011). Quantitative proteome analysis of the 20S proteasome of apoptotic Jurkat T cells. Amino Acids.  ISSN 0939-4451.  41(2), s 351- 361 . doi: 10.1007/s00726-010-0575-6
  • Dørum, Siri; Arntzen, Magnus; Qiao, Shuo Wang; Holm, Anders; Koehler, Christian; Thiede, Bernd; Sollid, Ludvig Magne & Fleckenstein, Burkhard (2010). The Preferred Substrates for Transglutaminase 2 in a Complex Wheat Gluten Digest Are Peptide Fragments Harboring Celiac Disease T-Cell Epitopes. PLoS ONE.  ISSN 1932-6203.  5(11) . doi: 10.1371/journal.pone.0014056 Show summary
  • Jensen, D; Brønstad, Gunnar; Thiede, Bernd; Dunstan, H.; Lien, E.B.; Holmoy, T & Reichelt, Karl Ludvig (2010). Hyper-peptiduria in multiple sclerosis. Current Trends in Immunology.  ISSN 0972-4567.  (4), s 51- 60
  • Kozielski, Frank; Riaz, Tahira; DeBonis, Salvatore; Koehler, Christian; Kröning, Mario; Panse, Isabel; Strozynski, Margarita Anna; Donaldson, Ian M & Thiede, Bernd (2010). Proteome analysis of microtubule-associated proteins and their interacting partners from mammalian brain. Amino Acids.  ISSN 0939-4451. . doi: 10.1007/s00726-010-0649-5
  • Bull, Vibeke Hervik; Færgestad, Ellen Mosleth; Strozynski, Margarita Anna & Thiede, Bernd (2010). Temporal proteome profiling of taxol-induced mitotic arrest and apoptosis. Electrophoresis.  ISSN 0173-0835.  31(11), s 1873- 1885 . doi: 10.1002/elps.200900780
  • De Souza, Gustavo; Fortuin, Suereta; Aguilar, Diana; Pando, Rogelio Hernandez; McEvoy, Christopher R.E.; van Helden, Paul D.; Koehler, Christian J; Thiede, Bernd; Warren, Robin M & Wiker, Harald G (2010). Using a Label-free Proteomics Method to Identify Differentially Abundant Proteins in Closely Related Hypo- and Hypervirulent Clinical Mycobacterium tuberculosis Beijing Isolates. Molecular & Cellular Proteomics.  ISSN 1535-9476.  9(11), s 2414- 2423 . doi: 10.1074/mcp.M900422-MCP200 Show summary
  • Jehmlich, N; Fetzer, I; Seifert, J.; Mattow, J.; Vogt, C.; Harms, H.; Thiede, Bernd; Richnow, H. H.; von Bergen, M. & Schmidt, Frank (2010). Decimal Place Slope, A Fast and Precise Method for Quantifying 13C Incorporation Levels for Detecting the Metabolic Activity of Microbial Species. Molecular & Cellular Proteomics.  ISSN 1535-9476.  (9), s 1221- 1227 . doi: 10.1074/mcp.M900407-MCP200
  • Saunders, Threrese Solstad; Bjørgo, Elisa; Koehler, Christian; Strozynski, Margarita Anna; Torgersen, Knut Martin; Tasken, Kjetil & Thiede, Bernd (2010). Quantitative proteome analysis of detergent-resistant membranes identifies the differential regulation of protein kinase C isoforms in apoptotic T cells. Proteomics.  ISSN 1615-9853.  10(15), s 2758- 2768 . doi: 10.1002/pmic.201000164
  • Schmidt, Frank; Dahlmann, Burkhardt; Hustoft, Hanne Kolsrud; Koehler, Christian; Strozynski, Margarita Anna; Klof, Alexander; Zimmy-Arndt, Ursula; Jungblut, Peter R. & Thiede, Bernd (2010). Quantitative proteome analysis of the 20S proteasome of apoptotic Jurkat T cells. Amino Acids.  ISSN 0939-4451. . doi: 10.1007/s00726-010-0575-6
  • Tomazella, Gisele Guiqardi; daSilva, Idalete; Thomé, Carolina H.; Greene, Lewis J; Koehler, Christian J; Thiede, Bernd; Wiker, Harald G & De Souza, Gustavo (2010). Analysis of detergent-insoluble and whole cell lysate fractions of resting neutrophils using high-resolution mass spectrometry. Journal of Proteome Research.  ISSN 1535-3893.  9(4), s 2030- 2036 . doi: 10.1021/pr1000253 Show summary
  • Treumann, A & Thiede, Bernd (2010). Isobaric protein and peptide quantification: perspectives and issues. Espert Review of Proteomics.  ISSN 1478-9450.  7(5), s 647- 653 . doi: 10.1586/EPR.10.29
  • de Souza, GA; De Souza, Gustavo; Søfteland, Tina; Softeland, T; Koehler, Christian J; Thiede, Bernd & Wiker, Harald G (2009). Validating divergent ORF annotation of the Mycobacterium leprae genome through a full translation dataset and peptide identification by tandem mass spectrometry. Proteomics.  ISSN 1615-9853.  9(12), s 3233- 3243 . doi: 10.1002/pmic.200800955 Show summary
  • Koehler, Christian; Strozynski, Margarita Anna; Kozielski, F; Treumann, A & Thiede, Bernd (2009). Isobaric Peptide Termini Labeling for MS/MS-Based Quantitative Proteomics. Journal of Proteome Research.  ISSN 1535-3893.  8(9), s 4333- 4341 . doi: 10.1021/pr900425n
  • Preza, Dorita; Thiede, Bernd; Olsen, Ingar & Grinde, Bjørn (2009). The proteome of the human parotid gland secretion in elderly with and without root caries. Acta Odontologica Scandinavica.  ISSN 0001-6357.  67(3), s 161- 169 . doi: 10.1080/00016350902751545
  • Schmidt, F; Schmid, M; Thiede, Bernd; Pleissner, KP; Bohme, M & Jungblut, PR (2009). Assembling proteomics data as a prerequisite for the analysis of large scale experiments. Chemistry Central Journal.  ISSN 1752-153X.  3 . doi: 10.1186/1752-153X-3-2
  • Schmidt, Frank; Fiege, T; Hustoft, Hanne Kolsrud; Kneist, S & Thiede, Bernd (2009). Shotgun mass mapping of Lactobacillus species and subspecies from caries related isolates by MALDI-MS. Proteomics.  ISSN 1615-9853.  9(7), s 1994- 2003 . doi: 10.1002/pmic.200701028
  • Kozielski, F; Skoufias, DA; Indorato, RL; Saoudi, Y; Jungblut, PR; Hustoft, Hanne Kolsrud; Strozynski, Margarita Anna & Thiede, Bernd (2008). Proteome analysis of apoptosis signaling by S-trityl-L-cysteine, a potent reversible inhibitor of human mitotic kinesin Eg5. Proteomics.  ISSN 1615-9853.  8 . doi: 10.1002/pmic.200700534
  • Klein, E; DeBonis, S; Thiede, Bernd; Skoufias, DA; Kozielski, F & Lebeau, L (2007). New chemical tools for investigating human mitotic kinesin Eg5. Bioorganic & Medicinal Chemistry.  ISSN 0968-0896.  15 . doi: 10.1016/j.bmc.2007.06.016
  • Schmidt, Frank; Hustoft, Hanne Kolsrud; Strozynski, Margarita Anna; Dimmler, C; Rudel, T & Thiede, Bernd (2007). Quantitative proteome analysis of cisplatin-induced apoptotic Jurkat T cells by stable isotope labeling with amino acids in cell culture,SDS-PAGE, and LC-MALDI-TOF/TOF MS. Electrophoresis.  ISSN 0173-0835.  28(23), s 4359- 4368 . doi: 10.1002/elps.200700119

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  • Sved Skottvoll, Frøydis; Lund, Kaja; Røberg-Larsen, Hanne; Berg, Henriette Sjånes; Thiede, Bernd; Lundanes, Elsa & Wilson, Steven Ray Haakon (2017). Diagnostic potential of exosomes: The purification issue.
  • Jensen, Janicke Liaaen; Utheim, Øygunn Aass; Chen, Xiangjun; Thiede, Bernd; Aqrawi, Lara Adnan; Rusthen, Shermin; Young, Alix; Utheim, Tor Paaske & Galtung, Hilde (2016). Searching for Disease Biomarkers for Primary Sjögren’s Syndrome Based on Oral and Ocular Patient Examinations.
  • Jungblut, Peter R.; Thiede, Bernd & Schluter, H (2016). Towards deciphering proteomes via the proteoform, protein speciation, moonlighting and protein code concepts. Journal of Proteomics.  ISSN 1874-3919.  134, s 1- 4 . doi: 10.1016/j.jprot.2016.01.012
  • Lopez Soop, Graciela; Reiner, Andrew Henry; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas Michel (2015). Regulation of Normal Mitotic Progression by A-kinase Anchoring Protein 95 (AKAP95).
  • Bousquet, Paula; Abshiru, Nebiyu; Sandvik, Joe Alexander; Pettersen, Erik O; Thiede, Bernd; Woods, Robert; Moreno, Ernesto & Krengel, Ute (2014). Anti-tumor antibodies and hypoxia.
  • Perdreau, Harmonie; Guldsten, Hanne; Progida, Cinzia; Thiede, Bernd; Bakke, Oddmund & Morth, Jens Preben (2014). Molecular and Structural Characterization of Sjögren syndrome/scleroderma autoantigen 1 (SSSCA1)..
  • Perdreau, Harmonie; Barfeld, Stefan; Guldsten, Hanne; Thiede, Bernd; Mills, Ian Geoffrey & Morth, Jens Preben (2013). Molecular and Structural Characterization of Sjögren syndrome/scleroderma autoantigen 1, a new binding partner of Tankyrase regulated by the oncogene c-Myc.
  • Arntzen, Magnus & Thiede, Bernd (2013). Cell Death Proteomics.
  • Bousquet, Paula; Abshiru, Nebiyu; Johansen, Rune Forstrøm; Bjørås, Magnar; Sandvik, Joe Alexander; Pettersen, Erik O; Thiede, Bernd; Woods, Robert; Moreno, Ernesto & Krengel, Ute (2013). A structural and functional study of anti-ganglioside antibodies. International Journal of Molecular Medicine.  ISSN 1107-3756.  32, s S42- S42 Show summary
  • Köhler, Christian Jeffrey; Thiede, Bernd; Lundanes, Elsa & Greibrokk, Tyge (2013). Isobaric peptide termini labeling (IPTL) - An alternative approach for quantitative proteomics.
  • Arntzen, Magnus & Thiede, Bernd (2012). ApoptoProteomics: An integrated database for analysis of proteomics data obtained from apoptotic cells.
  • Arntzen, Magnus & Thiede, Bernd (2012). Apoptoproteomics.
  • Bousquet, Paula; Thiede, Bernd; Moreno, Ernesto & Krengel, Ute (2012). Antitumor antibodies - Crystallization and MS analysis.
  • Demko, Viktor; Ako, Ako Eugene; Perroud, Pierre-Francois; Liang, Zhe; Johansen, Wenche; Wilson, Robert; Shalchian-Tabrizi, Kamran; Thiede, Bernd; Quatrano, Ralph & Olsen, Odd-Arne (2012). Searching for cellular targets of the plant calpain DEK1.
  • Khan, Rabia; Rukke, Håkon Valen; Filho, Antonio Pedro Ricomini; Fimland, Gunnar; Arntzen, Magnus; Thiede, Bernd & Petersen, Fernanda Cristina (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology.  ISSN 0021-9193.  194(15), s 3781- 3788 . doi: 10.1128/​JB.00624-12 Full text in Research Archive.
  • Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, A; Stein, Robert; Zimny-Amdt, Ursula; Schmid, Monika & Jungblut, Peter R. (2012). Protein species high resolution quantitative proteomics of HeLa cells using SILAC-2-DE-nanoLC/LTQ-Orbitrap mass spectrometry. Molecular & Cellular Proteomics.  ISSN 1535-9476. . doi: 10.1074/mcp.M112.019372
  • Arntzen, Magnus; Koehler, Christian; Barsnes, Harald; Berven, Frode; Treumann, Achim & Thiede, Bernd (2011). IsobariQ: Software for isobaric quantitative proteomics using IPTL, iTRAQ and TMT.
  • Bousquet, Paula; Thiede, Bernd; Moreno, Ernesto & Krengel, Ute (2011). Antitumor antibodies – Crystallization and MS analysis.
  • Tasken, Kjetil; Saunders, Threrese Solstad; Torgersen, Knut Martin; Aandahl, Einar Martin; Thiede, Bernd; Bains, Simer Jit; Landskron, Johannes; Hagness, Morten; Henjum, Karen; Foss, Aksel & Bjørnbeth, Bjørn Atle (2011). Method and compositions for identifying activated regulatory T cells.
  • Arntzen, Magnus & Thiede, Bernd (2010). IsobariQ.
  • Holland, C; Schmid, M; Zimny-Arndt, U; Thiede, Bernd; Jungblut, PR & Meyer, TF (2010). Host cell phosphoproteomics in response to H. pylori infection. European Journal of Cell Biology.  ISSN 0171-9335.  89, s 5- 5
  • Norheim, Frode; Raastad, Truls; Thiede, Bernd; Drevon, Christian A & Haugen, Fred (2010). The human skeletal muscle secretome - identification of the most abundantly secreted proteins in vitro and their regulation in response to training in vivo. Cardiovascular Research.  ISSN 0008-6363.  87, s S120- S120
  • Callaway, A; Kneist, S; Schmidt, Frank; Willershausen, B; Rupf, S; Wicht, M & Thiede, Bernd (2009). Diversity of Lactobacillus species in deep carious lesions of deciduous molars. International Journal of Medical Microbiology.  ISSN 1438-4221.  299, s 51- 51
  • De Souza, Gustavo; Fortuin, Suereta; McEvoy, Christopher R; Pando, Rogelio Hernandez; Koehler, Christian J; Thiede, Bernd; Warren, Robin M & Wiker, Harald G (2009). A label-free method identified differentially abundant proteins in related M.tuberculosis Beijing strains.

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Published Nov. 12, 2015 3:21 PM - Last modified Dec. 8, 2016 4:35 PM

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