Ralf Stefan Neumann

Image of Ralf  Stefan Neumann
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Room 4131
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Visiting address Sognsvannsveien 20 Rikshospitalet 0372 OSLO
Postal address Postboks 4950 Nydalen 0424 OSLO

Academic Interests

Most aspects of bioinformatics, especially related to sequencing data and non-coding RNA annotation.

Understanding the role of non-coding RNA in the evolution of animal multicellularity.

The analysis of biological pathways.

 

Higher education and employment history

Education:

Master degree in Psychology (NTNU, 1998)

Master degree in Biology (UiO, 2010)

 

Employment:

IT development consultant (XCon Data, GreenTrip, Ringnes/Carlsberg, Anticimex, 1999-2008)

Research assistent (bioinformatics) at the MERG group (UoO, 2010-2011)

Part-time bioinformatics consultant for NEXTERA (2014-)

 

 

Publications

  • Gunnarsen, Kristin Støen; Høydahl, Lene Støkken; Neumann, Ralf Stefan; Bjerregaard-Andersen, Kaare; Nilssen, Nicolay Rustad; Sollid, Ludvig Magne; Sandlie, Inger & Løset, Geir Åge (2018). Soluble T-cell receptor design influences functional yield in an E. coli chaperone-assisted expression system. PLoS ONE.  ISSN 1932-6203.  13(4), s e0195868 . doi: 10.1371/journal.pone.0195868 Show summary
  • Gunnarsen, Kristin Støen; Høydahl, Lene Støkken; Risnes, Louise Fremgaard; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Bergseng, Elin; Frigstad, Terje; Frick, Rahel; du Pré, Marie Fleur; Dalhus, Bjørn; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang; Sollid, Ludvig Magne; Sandlie, Inger & Løset, Geir Åge (2017). A TCRα framework–centered codon shapes a biased T cell repertoire through direct MHC and CDR3β interactions. JCI Insight.  ISSN 2379-3708.  2(17) . doi: 10.1172/jci.insight.95193 Full text in Research Archive.
  • Roy, Bishnudeo; Neumann, Ralf Stefan; Snir, Omri; Iversen, Rasmus; Sandve, Geir Kjetil; Lundin, Knut Erik Aslaksen & Sollid, Ludvig Magne (2017). High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease. Journal of Immunology.  ISSN 0022-1767.  199((2)), s 782- 791 . doi: 10.4049/jimmunol.1700169
  • Bråte, Jon; Adamski, Marcin; Neumann, Ralf Stefan; Shalchian-Tabrizi, Kamran & Adamska, Maja (2015). Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proceedings of the Royal Society of London. Biological Sciences.  ISSN 0962-8452.  282(1821), s 1- 9 . doi: 10.1098/rspb.2015.1746 Full text in Research Archive. Show summary
  • Kumar, Surendra; Krabberød, Anders Kristian; Neumann, Ralf Stefan; Michalickova, Katerina; Zhao, Sen; Zhang, Xiaoli & Shalchian-Tabrizi, Kamran (2015). BIR pipeline for preparation of phylogenomic data. Evolutionary Bioinformatics.  ISSN 1176-9343.  11, s 79- 83 . doi: 10.4137/EBO.S10189
  • Neumann, Ralf Stefan; Kumar, Surendra; Haverkamp, Thomas Hendricus Augustus & Shalchian-Tabrizi, Kamran (2014). BLASTGrabber: A bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data. BMC Bioinformatics.  ISSN 1471-2105.  15(128) . doi: 10.1186/1471-2105-15-128 Full text in Research Archive.
  • Neumann, Ralf Stefan; Kumar, Surendra & Shalchian-Tabrizi, Kamran (2014). BLAST output visualization in the new sequencing era. Briefings in Bioinformatics.  ISSN 1467-5463.  15(4), s 484- 503 . doi: 10.1093/bib/bbt009

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  • Haraldsen, Arthur Alexander Blørstad; Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Grini, Paul Eivind & Shalchian-Tabrizi, Kamran (2016). Pre-metazoan origin of animal microRNAs.
  • Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad & Shalchian-Tabrizi, Kamran (2015). Expanding our knowledge about parasites using PATHOS-DB (The PArasiTe–HOSt-DataBase).
  • Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad & Shalchian-Tabrizi, Kamran (2015). HIDDEN PROTIST PARASITES: HOW CAN THEY BE DETECTED?.
  • Høydahl, Lene Støkken; Neumann, Ralf Stefan; Qiao, Shuo Wang; Sollid, Ludvig Magne; Sandlie, Inger & Løset, Geir Åge (2011). Development of a High Affinity TCR Reagent by Phage Display to Study Antigen Presentation in Celiac Disease. Scandinavian Journal of Immunology.  ISSN 0300-9475.  73(4), s 372- 372

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Published May 12, 2014 11:11 AM - Last modified Apr. 24, 2015 12:56 PM