Eivind Hovig

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Room 4417
Username
Visiting address Gaustadalléen 23B Ole Johan Dahls hus 0373 OSLO
Postal address Postboks 1080 Blindern 0316 OSLO

Phone number: +47-22781778

Tags: Life sciences, Bioinformatics

Publications

  • Domanska, Diana; Vodak, Daniel; Lund-Andersen, Christian; Salvatore, Stefania; Hovig, Eivind & Sandve, Geir Kjetil (2017). The rainfall plot: Its motivation, characteristics and pitfalls. BMC Bioinformatics.  ISSN 1471-2105.  18(1) . doi: 10.1186/s12859-017-1679-8 Show summary
  • Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål & Hovig, Eivind (2017). Potentially pathogenic germline CHEK2 c.319+2T>A among multiple early-onset cancer families. Familial Cancer.  ISSN 1389-9600.  Published ahead of print, s 1- 13 . doi: 10.1007/s10689-017-0011-0
  • Meisal, Roger; Rounge, Trine Ballestad; Christiansen, Irene Kraus; Eieland, Alexander Kirkeby; Worren, Merete Molton; Molden, Tor; Kommedal, Øyvind; Hovig, Eivind; Leegaard, Truls Michael & Ambur, Ole Herman (2017). HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization. PLoS ONE.  ISSN 1932-6203.  12(1), s 1- 14 . doi: 10.1371/journal.pone.0169074
  • Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D. Gareth; Lindblom, Annika; Macrae, Finlay; Blanco, Ignacio; Sijmons, Rolf; Jeffries, Jacqueline; Vasen, Hans; Burn, John; Nakken, Sigve; Hovig, Eivind; Rødland, Einar Andreas; Tharmaratnam, Kukatharmini; De Vos Tot Nederveen Cappel, Wouter H.; Hill, James; Wijnen, Juul; Green, Kate; Lalloo, Fiona; Sunde, Lone; Mints, Miriam; Bertario, Lucio; Pineda, Marta; Navarro, Matilde; Morak, Monika; Renkonen-Sinisalo, Laura; Frayling, Ian M.; Plazzer, John-Paul; Pylvanainen, Kirsi; Sampson, Julian R.; Capella, Gabriel; Mecklin, Jukka-Pekka & Möslein, Gabriella (2017). Cancer incidence and survival in Lynch syndrome patients receiving colonoscopic and gynaecological surveillance: First report from the prospective Lynch syndrome database. Gut.  ISSN 0017-5749.  66(3), s 464- 472 . doi: 10.1136/gutjnl-2015-309675
  • Namløs, Heidi Maria; Zaikova, Olga; Bjerkehagen, Bodil; Vodak, Daniel; Hovig, Johannes Eivind; Myklebost, Ola; Pedersen, Kjetil Boye & Meza, Leonardo Zepeda (2017). Use of liquid biopsies to monitor disease progression in a sarcoma patient: a case report. BMC Cancer.  ISSN 1471-2407.  17:29, s 1- 6 . doi: 10.1186/s12885-016-2992-8
  • Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn Sverre; Johansen, Morten; Mora, Antonio M.; Lund-Andersen, Christin; Fromm, Bastian; Eskeland, Ragnhild; Gabrielsen, Odd Stokke; Ferkingstad, Egil; Nakken, Sigve; Bengtsen, Mads; Nederbragt, Alexander Johan; Thorarensen, Hildur Sif; Andreas Akse, Johannes; Glad, Ingrid Kristine; Hovig, Johannes Eivind & Sandve, Geir Kjetil (2017). GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience.  ISSN 2047-217X. . doi: 10.1093/gigascience/gix032 Show summary
  • Alver, Tine Norman; Lavelle, Timothy J; Longva, Ane Sager; Øy, Geir Frode; Hovig, Johannes Eivind & Bøe, Sigurd (2016). MITF depletion elevates expression levels of ERBB3 receptor and its cognate ligand NRG1-beta in melanoma. OncoTarget.  ISSN 1949-2553.  7(34), s 55128- 55140 . doi: 10.18632/oncotarget.10422 Show summary
  • Björklund, Andreas T.; Clancy, Trevor; Goodridge, Jodie; Béziat, Vivien; Schaffer, Marie; Hovig, Johannes Eivind; Ljunggren, Hans-Gustaf; Ljungman, Per T. & Malmberg, Karl-Johan (2016). Naive donor NK cell repertoires associated with less leukemia relapse after allogeneic hematopoietic stem cell transplantation. Journal of Immunology.  ISSN 0022-1767.  196(3), s 1400- 1411 . doi: 10.4049/jimmunol.1501434
  • Børnich, Claus; Grytten, Ivar; Hovig, Johannes Eivind; Paulsen, Jonas; Cech, Martin & Sandve, Geir Kjetil (2016). Galaxy Portal: Interacting with the galaxy platform through mobile devices. Bioinformatics.  ISSN 1367-4803.  32(11), s 1743- 1745 . doi: 10.1093/bioinformatics/btw042
  • Clancy, Trevor & Hovig, Eivind (2016). Profiling networks of distinct immune-cells in tumors. BMC Bioinformatics.  ISSN 1471-2105.  17(1) . doi: 10.1186/s12859-016-1141-3
  • Di Stefano, Marco; Paulsen, Jonas; Lien, Tonje Gulbrandsen; Hovig, Johannes Eivind & Micheletti, Cristian (2016). Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization. Scientific Reports.  ISSN 2045-2322.  6 . doi: 10.1038/srep35985
  • Haakensen, Vilde Drageset; Nygaard, Vegard; Greger, Liliana; Aure, Miriam Ragle; Fromm, Bastian; Bukholm, Ida Rashida Khan; Luders, Torben; Chin, Suet-Feung; Git, Anna; Caldas, Carlos; Kristensen, Vessela N.; Brazma, Alvis; Børresen-Dale, Anne-Lise; Hovig, Johannes Eivind & Helland, Åslaug (2016). Subtype-specific micro-RNA expression signatures in breast cancer progression. International Journal of Cancer.  ISSN 0020-7136.  139(5), s 1117- 1128 . doi: 10.1002/ijc.30142
  • Halvorsen, Ann Rita; Silwal-Pandit, Laxmi; Meza, Leonardo Zepeda; Vodak, Daniel; Vu, Phuong Ngoc Thi; Sagerup, Camilla Maria Troøien; Hovig, Johannes Eivind; Myklebost, Ola; Børresen-Dale, Anne-Lise; Brustugun, Odd Terje & Helland, Åslaug (2016). TP53 mutation spectrum in smokers and never smoking lung cancer patients. Frontiers in Genetics.  ISSN 1664-8021.  7(MAY) . doi: 10.3389/fgene.2016.00085 Show summary
  • Haugvik, Sven-Petter; Vodak, Daniel; Haugom, Lisbeth; Hovig, Johannes Eivind; Gladhaug, Ivar Prydz; Heim, Sverre & Micci, Francesca (2016). Transcriptomic Profiling of Tumor Aggressiveness in Sporadic Nonfunctioning Pancreatic Neuroendocrine Neoplasms. Pancreas.  ISSN 0885-3177.  45(8), s 1196- 1203 . doi: 10.1097/MPA.0000000000000610
  • Nygaard, Vegard; Rødland, Einar Andreas & Hovig, Johannes Eivind (2016). Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses. Biostatistics.  ISSN 1465-4644.  17(1), s 29- 39 . doi: 10.1093/biostatistics/kxv027
  • Späth, Florentin; Andersson, Ulrika; Dahlin, Anna M; Langseth, Hilde; Hovig, Johannes Eivind; Johannesen, Tom Børge; Grankvist, Kjell; Björkblom, Benny; Wibom, Carl & Melin, Beatrice (2016). Pre-diagnostic serum levels of EGFR and ErbB2 and genetic glioma risk variants: a nested case-control study. Tumour Biology.  ISSN 1010-4283.  37(8), s 11065- 11072 . doi: 10.1007/s13277-015-4742-y
  • Rydbeck, Halfdan; Sandve, Geir Kjetil F.; Ferkingstad, Egil; Simovski, Boris; Rye, Morten Beck & Hovig, Johannes Eivind (2015). ClusTrack: Feature extraction and similarity measures for clustering of genome-wide data sets. PLoS ONE.  ISSN 1932-6203.  10(4) . doi: 10.1371/journal.pone.0123261 Full text in Research Archive. Show summary
  • Alioto, Tyler S.; Buchhalter, Ivo; Derdak, Sophia; Hutter, Barbara; Eldridge, Matthew D.; Hovig, Johannes Eivind; Heisler, Lawrence E.; Beck, Timothy A.; Simpson, Jared T.; Tonon, Laurie; Sertier, Anne-Sophie; Patch, Ann-Marie; Jäger, Natalie; Ginsbach, Philip; Drews, Ruben; Paramasivam, Nagarajan; Kabbe, Rolf; Chotewutmontri, Sasithorn; Diessl, Nicolle; Previti, Christopher; Schmidt, Sabine; Brors, Benedikt; Feuerbach, Lars; Heinold, Michael; Gröbner, Susanne; Korshunov, Andrey; Tarpey, Patrick S.; Butler, Adam P.; Hinton, Jonathan; Jones, David; Menzies, Andrew; Raine, Keiran; Shepherd, Rebecca; Stebbings, Lucy; Teague, Jon W.; Ribeca, Paolo; Giner, Francesc Castro; Beltran, Sergi; Raineri, Emanuele; Dabad, Marc; Heath, Simon C.; Gut, Marta; Denroche, Robert E.; Harding, Nicholas J.; Yamaguchi, Takafumi N.; Fujimoto, Akihiro; Nakagawa, Hidewaki; Quesada, Victor; Valdes-Mas, Rafael; Nakken, Sigve; Vodák, Daniel; Bower, Lawrence; Lynch, Andrew G.; Anderson, Charlotte L.; Waddell, Nicola; Pearson, John V.; Grimmond, Sean M.; Peto, Myron; Spellman, Paul; He, Minghui; Kandoth, Cyriac; Lee, Semin; Zhang, John; Letourneau, Louis; Ma, Singer; Seth, Sahil; Torrents, David; Xi, Liu; Wheeler, David A.; Lopez-Otin, Carlos; Campo, Elias; Campbell, Peter J.; Boutros, Paul C.; Puente, Xose S.; Gerhard, Daniela S.; Pfister, Stefan M.; McPherson, John D.; Hudson, Thomas J.; Schlesner, Matthias; Lichter, Peter; Eils, Roland; Jones, David T.W. & Gut, Ivo G. (2015). A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing. Nature Communications.  ISSN 2041-1723.  6:10001 . doi: 10.1038/ncomms10001
  • Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind; Sandve, Geir Kjetil F.; Gabrielsen, Odd Stokke & Eskeland, Ragnhild (2015). c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. PLoS ONE.  ISSN 1932-6203.  10(7) . doi: 10.1371/journal.pone.0133280 Full text in Research Archive. Show summary
  • Ekstrøm, Per Olaf; Nakken, Sigve; Johansen, Morten & Hovig, Johannes Eivind (2015). Automated amplicon design suitable for analysis of DNA variants by melting techniques. BMC Research Notes.  ISSN 1756-0500.  8(1) . doi: 10.1186/s13104-015-1624-8
  • Fromm, Bastian; Billipp, Tyler; Peck, Liam E.; Johansen, Morten; Tarver, James E.; King, Benjamin L.; Newcomb, James M.; Sempere, Lorenzo F.; Flatmark, Kjersti; Hovig, Johannes Eivind & Peterson, Kevin J. (2015). A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Annual Review of Genetics.  ISSN 0066-4197.  49, s 213- 242 . doi: 10.1146/annurev-genet-120213-092023
  • Heramb, Cecilie; Ekstrøm, Per Olaf; Tharmaratnam, Kukatharmini; Hovig, Johannes Eivind; Møller, Pål & Mæhle, Lovise Olaug (2015). Ten modifiers of BRCA1 penetrance validated in a Norwegian series. Hereditary Cancer in Clinical Practice.  ISSN 1731-2302.  13:14, s 1- 12 . doi: 10.1186/s13053-015-0035-0
  • Kraus, Hanne Irene; Sandve, Geir Kjetil F.; Schmitz, Martina; Dürst, Matthias & Hovig, Johannes Eivind (2015). Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis. PLoS ONE.  ISSN 1932-6203.  10(3) . doi: 10.1371/journal.pone.0119566
  • Lau, Corinna; Nygård, Ståle; Fure, Hilde; Olstad, Ole Kristoffer; Holden, Marit; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik (2015). CD14 and complement crosstalk and largely mediate the transcriptional response to Escherichia coli in human whole blood as revealed by DNA microarray. PLoS ONE.  ISSN 1932-6203.  10(2) . doi: 10.1371/journal.pone.0117261 Full text in Research Archive. Show summary
  • Lau, Corinna; Olstad, Ole Kristoffer; Holden, Marit; Nygård, Ståle; Fure, Hilde; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik (2015). Gene expression profiling of Gram-negative bacteria-induced inflammation in human whole blood: The role of complement and CD14-mediated innate immune response. Genomics Data.  ISSN 2213-5960.  5, s 176- 183 . doi: 10.1016/j.gdata.2015.05.019 Full text in Research Archive.
  • Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D Gareth; Lindblom, Annika; Macrae, Finlay A.; Blanco, Ignacio; Sijmons, Rolf; Jeffries, Jacqueline; Vasen, Hans; Burn, John; Nakken, Sigve; Hovig, Johannes Eivind; Rødland, Einar Andreas; Tharmaratnam, Kukatharmini; Nederveen Cappel, Wouter; Hill, James; Wijnen, Juul; Green, Kate; Lalloo, Fiona; Sunde, Lone; Mints, Miriam; Bertario, Lucio; Pineda, Marta; Navarro, Matilde; Morak, Monika; Renkonen-Sinisalo, Laura; Frayling, Ian M; Plazzer, John-Paul; Pylvanainen, Kirsi; Sampson, Julian R.; Capella, Gabriel; Mecklin, Jukka-Pekka & Möslein, Gabriela (2015). Cancer incidence and survival in Lynch syndrome patients receiving colonoscopic and gynaecological surveillance: first report from the prospective Lynch syndrome database. Gut.  ISSN 0017-5749.
  • Rustad, Even Holth; Dai, Hong Yan; Hov, Håkon; Coward, Eivind; Beisvag, Vidar; Myklebost, Ola; Hovig, Johannes Eivind; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda; Sandvik, Arne Kristian; Wader, Karin Fahl; Misund, Kristine; Sundan, Anders; Aarset, Harald & Waage, Anders (2015). BRAF V600E mutation in early-stage multiple myeloma: good response to broad acting drugs and no relation to prognosis. Blood Cancer Journal.  ISSN 2044-5385.  5:e299(3), s 1- 7 . doi: 10.1038/bcj.2015.24 Full text in Research Archive.
  • Wibom, Carl; Späth, Florentin; Dahlin, Anna M.; Langseth, Hilde; Hovig, Johannes Eivind; Rajaraman, Preetha; Johannesen, Tom Børge; Andersson, Ulrika & Melin, Beatrice (2015). Investigation of established genetic risk variants for glioma in prediagnostic samples from a population-based nested case-control study. Cancer Epidemiology, Biomarkers and Prevention.  ISSN 1055-9965.  24(5), s 810- 816 . doi: 10.1158/1055-9965.EPI-14-1106
  • Chilamakuri, Chandra Sekhar Reddy; Lorenz, Susanne; Madoui, Mohammed-Amin; Vodak, Daniel; Sun, Jinchang; Hovig, Johannes Eivind; Myklebost, Ola & Meza, Leonardo Zepeda (2014). Performance comparison of four exome capture systems for deep sequencing. BMC Genomics.  ISSN 1471-2164.  15(1) . doi: 10.1186/1471-2164-15-449
  • Clancy, Trevor & Hovig, Johannes Eivind (2014). Differential protein network analysis of the immune cell lineage. BioMed Research International.  ISSN 2314-6133.  2014 . doi: 10.1155/2014/363408
  • Clancy, Trevor & Hovig, Johannes Eivind (2014). From proteomes to complexomes in the era of systems biology. Proteomics.  ISSN 1615-9853.  14(1), s 24- 41 . doi: 10.1002/pmic.201300230
  • Nygaard, Vigdis; Prasmickaite, Lina; Vasiliauskaite, Kotryna; Clancy, Trevor & Hovig, Johannes Eivind (2014). Melanoma brain colonization involves the emergence of a brain-adaptive phenotype. Oncoscience.  ISSN 2331-4737.  1(1), s 82- 94 . doi: 10.18632/oncoscience.11
  • Nygård, Ståle; Reitan, Trond; Clancy, Trevor; Nygaard, Vegard; BJØRNSTAD, JOHANNES; Skrbic, Biljana; Tønnessen, Theis; Christensen, Geir Arve & Hovig, Johannes Eivind (2014). Identifying pathogenic processes by integrating microarray data with prior knowledge. BMC Bioinformatics.  ISSN 1471-2105.  15(1) . doi: 10.1186/1471-2105-15-115
  • Paulsen, Jonas; Rødland, Einar Andreas; Holden, Lars; Holden, Marit & Hovig, Johannes Eivind (2014). A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions. Nucleic Acids Research.  ISSN 0305-1048.  42(18), s e143 . doi: 10.1093/nar/gku738 Show summary
  • Paulsen, Jonas; Sandve, Geir Kjetil F.; Gundersen, Sveinung; Lien, Tonje Gulbrandsen; Trengereid, Kai & Hovig, Johannes Eivind (2014). HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization. Bioinformatics.  ISSN 1367-4803.  30(11), s 1620- 1622 . doi: 10.1093/bioinformatics/btu082
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard; Paulsen, Jonas; Rydbeck, Halfdan; Trengereid, Kai; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Kalaš, Matúš; Lien, Tonje Gulbrandsen; Rye, Morten Beck; Frigessi, Arnoldo & Hovig, Johannes Eivind (2013). The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Research.  ISSN 0305-1048.  41(W1), s W133- W141 . doi: 10.1093/nar/gkt342 Full text in Research Archive. Show summary
  • Bøe, Sigurd; Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Lavelle, Timothy J; Sæbøe-Larssen, Stein & Hovig, Johannes Eivind (2013). Light-Controlled Modulation of Gene Expression Using Polyamidoamine Formulations. Nucleic Acid Therapeutics.  ISSN 2159-3337.  23(2), s 160- 165 . doi: 10.1089/nat.2012.0413
  • Clancy, Trevor; Rødland, Einar Andreas; Nygård, Ståle & Hovig, Johannes Eivind (2013). Predicting Physical Interactions between Protein Complexes. Molecular & Cellular Proteomics.  ISSN 1535-9476.  12(6), s 1723- 1734 . doi: 10.1074/mcp.O112.019828
  • Fromm, Bastian; Worren, Merete Molton; Hahn, Christoph; Hovig, Johannes Eivind & Bachmann, Lutz (2013). Substantial loss of conserved and gain of novel microRNA families in flatworms. Molecular biology and evolution.  ISSN 0737-4038.  30(12), s 2619- 2628 . doi: 10.1093/molbev/mst155
  • Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Hovig, Johannes Eivind & Bøe, Sigurd (2013). Evaluation of Biodegradable Peptide Carriers for Light-Directed Targeting. Nucleic Acid Therapeutics.  ISSN 2159-3337.  23(2), s 131- 139 . doi: 10.1089/nat.2012.0403
  • Mattingsdal, Morten; Brown, Andrew; Djurovic, Srdjan; Sønderby, Ida Elken; ALONSO, ANDRES SERVER; Melle, Ingrid; Agartz, Ingrid; Hovig, Johannes Eivind; Jensen, Jimmy Kristian & Andreassen, Ole Andreas (2013). Pathway analysis of genetic markers associated with a functional MRI faces paradigm implicates polymorphisms in calcium responsive pathways. NeuroImage.  ISSN 1053-8119.  70, s 143- 149 . doi: 10.1016/j.neuroimage.2012.12.035
  • Paulsen, Jonas; Lien, Tonje Gulbrandsen; Sandve, Geir Kjetil; Holden, Lars; Borgan, Ørnulf; Glad, Ingrid Kristine & Hovig, Johannes Eivind (2013). Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements. Nucleic Acids Research.  ISSN 0305-1048.  41(10), s 5164- 5174 . doi: 10.1093/nar/gkt227 Show summary
  • Schee, Kristina; Lorenz, Susanne; Worren, Merete Molton; Günther, Clara-Cecilie; Holden, Marit; Hovig, Johannes Eivind; Fodstad, Øystein; Meza, Leonardo Zepeda & Flatmark, Kjersti (2013). Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer. PLoS ONE.  ISSN 1932-6203.  8(6) . doi: 10.1371/journal.pone.0066165 Show summary
  • Kresse, Stine Henrichson; Rydbeck, Halfdan; Skårn, Magne; Namløs, Heidi Maria; Barragan Polania, Ana H.; Cleton-Jansen, Anne-Marie; Serra, Massimo; Liestøl, Knut; Hogendoorn, Pancras C. W.; Hovig, Eivind; Myklebost, Ola & Meza-Zepeda, Leonardo Andrés (2012). Integrative Analysis Reveals Relationships of Genetic and Epigenetic Alterations in Osteosarcoma. PLoS ONE.  ISSN 1932-6203.  7(11) . doi: 10.1371/journal.pone.0048262
  • Thingnes, Josef; Lavelle, Timothy J.; Gjuvsland, Arne Bjørke; Omholt, Stig W & Hovig, Eivind (2012). Towards a quantitative understanding of the MITF-PIAS3-STAT3 connection. BMC Systems Biology.  ISSN 1752-0509.  6 . doi: 10.1186/1752-0509-6-11
  • Thingnes, Josef; Lavelle, Timothy J.; Hovig, Eivind & Omholt, Stig W (2012). Understanding the Melanocyte Distribution in Human Epidermis: An Agent-Based Computational Model Approach. PLoS ONE.  ISSN 1932-6203.  7(7) . doi: 10.1371/journal.pone.0040377
  • Bruhn, Sören; Barrenäs, Fredrik; Mobini, R; Andersson, B; Chavali, S.; Egan, B. S.; Hovig, Eivind; Sandve, Geir Kjetil; Langston, M. A.; Rogers, Gary; Wang, H. & Benson, Mikael (2012). Increased expression of IRF4 and ETS1 in CD4(+) cells from patients with intermittent allergic rhinitis. Allergy. European Journal of Allergy and Clinical Immunology.  ISSN 0105-4538.  67(1), s 33- 40 . doi: 10.1111/j.1398-9995.2011.02707.x
  • Jørgensen, Jens Andreas Lindin; Hovig, Eivind & Bøe, Sigurd (2012). Potent Gene Silencing In Vitro at Physiological pH Using Chitosan Polymers. Nucleic Acid Therapeutics.  ISSN 2159-3337.  22(2), s 96- 102 . doi: 10.1089/nat.2011.0335
  • Liu, Fang; Kuo, Patrick Winston; Jenssen, Tor-Kristian & Hovig, Eivind (2012). Performance comparison of multiple microarray platforms for gene expression profiling. Methods in Molecular Biology.  ISSN 1064-3745.  802, s 141- 155
  • Nakken, Sigve; Johansen, Morten; Fillebeen, Julien; Berge, Ole Petter; Kirkerød, Harald; Jenssen, Tor-Kristian & Hovig, Eivind (2012). CellLineMiner: a knowledge portal for human cell lines. Bioinformation.  ISSN 0973-2063.  8(22), s 1119- 1122 . doi: 10.6026/97320630081119
  • Trachtenberg, AJ; Robert, JH; Abdalla, AE; Fraser, A; He, SY; Lacy, JN; Rivas-Morello, C; Truong, A; Hardiman, G; Ohno-Machado, Lucila; Liu, Fang; Hovig, Eivind & Kuo, Winston Patrick (2012). A primer on the current state of microarray technologies. Methods in Molecular Biology.  ISSN 1064-3745.  802, s 3- 17
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit; Liestøl, Knut; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Johansen, Morten; Nygaard, Vegard; Tøstesen, Eivind; Frigessi, Arnoldo & Hovig, Eivind (2011). The differential disease regulome. BMC Genomics.  ISSN 1471-2164.  12, s 353 . doi: 10.1186/1471-2164-12-353 Show summary
  • Bøe, Sigurd; Longva, Ane Sager & Hovig, Eivind (2011). A novel photosensitizer for light-controlled gene silencing. Nucleic Acid Therapeutics.  ISSN 2159-3337.  21(5), s 359- 367 . doi: 10.1089/nat.2011.0309
  • Bøe, Sigurd; Prasmickaite, Lina; Engesæter, Birgit Øvstebø & Hovig, Eivind (2011). Light-directed delivery of nucleic acids. Methods in Molecular Biology.  ISSN 1064-3745.  764, s 107- 121
  • Clancy, Trevor; Pedicini, Marco; Castiglione, Filippo; Santoni, Daniele; Nygaard, Vegard; Lavelle, Timothy J.; Benson, Michael D. & Hovig, Eivind (2011). Immunological network signatures of cancer progression and survival. BMC Medical Genomics.  ISSN 1755-8794.  4 . doi: 10.1186/1755-8794-4-28
  • De Beule, Joachim; Hovig, Eivind & Benson, Mikael (2011). Introducing Dynamics into the Field of Biosemiotics A Formal Account with Examples from Language and Immunology. Biosemiotics.  ISSN 1875-1342.  4(1), s 5- 24 . doi: 10.1007/s12304-010-9101-1
  • Gundersen, Sveinung; Kalaš, Matúš; Abul, Osman; Frigessi, Arnoldo; Hovig, Eivind & Sandve, Geir Kjetil (2011). Identifying elemental genomic track types and representing them uniformly. BMC Bioinformatics.  ISSN 1471-2105.  12 . doi: 10.1186/1471-2105-12-494
  • Hjortland, Geir Olav; Meza, Leonardo Zepeda; Beiske, Klaus; Ree, Anne Hansen; Tveito, Siri; Høifødt, Hanne Kleppe; Bøhler, Per J.; Hole, Knut Håkon; Myklebost, Ola; Fodstad, Øystein; Smeland, Sigbjørn & Hovig, Eivind (2011). Genome wide single cell analysis of chemotherapy resistant metastatic cells in a case of gastroesophageal adenocarcinoma. BMC Cancer.  ISSN 1471-2407.  11 . doi: 10.1186/1471-2407-11-455
  • Ågesen, Trude Holmeide; Berg, Marianne; Clancy, Trevor; Thiis-Evensen, Espen; Cekaite, Lina; Lind, Guro Elisabeth; Nesland, Jahn M; Bakka, Arne Olav; Mala, Tom; Hauss, Hans Joakim; Fetveit, T; Vatn, Morten H; Hovig, Eivind; Nesbakken, Arild; Lothe, Ragnhild A & Skotheim, Rolf Inge (2011). CLC and IFNAR1 are differentially expressed and a global immunity score is distinct between early- and late-onset colorectal cancer. Genes and Immunity.  ISSN 1466-4879.  12(8), s 653- 662 . doi: 10.1038/gene.2011.43
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit; Liestøl, Knut; Clancy, Trevor; Ferkingstad, Egil; Johansen, Morten; Nygaard, Vegard; Tøstesen, Eivind; Frigessi, Arnoldo & Hovig, Eivind (2010). The Genomic HyperBrowser: inferential genomics at the sequence level. Genome Biology.  ISSN 1465-6906.  11(12) . doi: 10.1186/gb-2010-11-12-r121 Full text in Research Archive. Show summary
  • Bøe, Sigurd; Longva, Ane Sager & Hovig, Eivind (2010). Cyclodextrin-Containing Polymer Delivery System for Light-Directed siRNA Gene Silencing. Oligonucleotides.  ISSN 1545-4576.  20(4), s 175- 182 . doi: 10.1089/oli.2010.0230
  • Bøe, Sigurd; Sæbøe-Larssen, Stein & Hovig, Eivind (2010). Light-Induced Gene Expression Using Messenger RNA Molecules. Oligonucleotides.  ISSN 1545-4576.  20(1), s 1- 6 . doi: 10.1089/oli.2009.0209
  • Nakken, Sigve; Rødland, Einar Andreas & Hovig, Eivind (2010). Impact of DNA Physical Properties on Local Sequence Bias of Human Mutation. Human Mutation.  ISSN 1059-7794.  31(12), s 1316- 1325 . doi: 10.1002/humu.21371
  • Pedicini, Marco; Barrenäs, Fredrik; Clancy, Trevor; Castiglione, Filippo; Hovig, Eivind; Kanduri, Kartiek; Santoni, Daniele & Benson, Mikael (2010). Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation. PloS Computational Biology.  ISSN 1553-734X.  6(12) . doi: 10.1371/journal.pcbi.1001032
  • Thingnes, Josef; Øyehaug, Leiv; Hovig, Eivind & Omholt, Stig W (2009). The mathematics of tanning. BMC Systems Biology.  ISSN 1752-0509.  3 . doi: 10.1186/1752-0509-3-60
  • Bjerner, Johan; Theodorsson, Elvar; Hovig, Eivind & Kallner, Anders (2009). Non-parametric estimation of reference intervals in small non-Gaussian sample sets. Accreditation and Quality Assurance.  ISSN 0949-1775.  14(4), s 185- 192 . doi: 10.1007/s00769-009-0490-2
  • Lehne, Gustav; Grasmo-Wendler, Unn-Hilde; Berner, Jeanne-Marie; Meza, Leonardo Andres Zepeda; Adamsen, Birgitte Lid; Flack, Aksel; Reiner, Andrew Henry; Clausen, Ole Petter Fraas; Hovig, Eivind & Myklebost, Ola (2009). Upregulation of stem cell genes in multidrug resistant K562 leukemia cells. Leukemia research : a Forum for Studies on Leukemia and Normal Hemopoiesis.  ISSN 0145-2126.  33(10), s 1379- 1385 . doi: 10.1016/j.leukres.2009.03.028
  • Nakken, Sigve; Rognes, Torbjørn & Hovig, Eivind (2009). The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts. Nucleic Acids Research.  ISSN 0305-1048.  37(17), s 5749- 5756 . doi: 10.1093/nar/gkp590
  • Nakken, Sigve; Rødland, Einar Andreas; Rognes, Torbjørn & Hovig, Eivind (2009). Large-scale inference of the point mutational spectrum in human segmental duplications. BMC Genomics.  ISSN 1471-2164.  10 . doi: 10.1186/1471-2164-10-43
  • Nygaard, Vigdis & Hovig, Eivind (2009). Methods for quantitation of gene expression. Frontiers in Bioscience.  ISSN 1093-9946.  14, s 552- 569 . doi: 10.2741/3262
  • Tøstesen, Eivind; Sandve, Geir Kjetil; Liu, Fang & Hovig, Eivind (2009). Segmentation of DNA sequences into twostate regions and melting fork regions. Journal of Physics: Condensed Matter.  ISSN 0953-8984.  21(3) . doi: 10.1088/0953-8984/21/3/034109
  • Lyng, H; Lando, M; Brovig, RS; Svendsrud, DH; Johansen, M; Galteland, E; Brustugun, OT; Meza, Zepeda Leonardo; Myklebost, Ola; Kristensen, Gunnar S Balle; Hovig, Eivind & Stokke, T (2008). GeneCount: genome-wide calculation of absolute tumor DNA copy numbers from array comparative genomic hybridization data. Genome Biology.  ISSN 1465-6906.  9, s R86 . doi: 10.1186/gb-2008-9-5-r86
  • Nygaard, V; Liu, Fang; Holden, Marit; Kuo, Winston P.; Trimarchi, Jeff; Ohno-Machado, Lucila; Cepko, Connie L.; Frigessi, Arnoldo; Glad, Ingrid K.; Wiel, Mark A. van de; Hovig, Eivind & Lyng, H (2008). Validation of oligoarrays for quantitative exploration of the transcriptome. BMC Genomics.  ISSN 1471-2164.  9 . doi: 10.1186/1471-2164-9-258 Show summary
  • Cekaite, Lina; Hovig, Eivind; Furset, Gro & Sioud, Mouldy (2007). Gene expression analysis in blood cells in response to unmodified and 2'-modified siRNAs reveals TLR-dependent and independent effects. Journal of Molecular Biology.  ISSN 0022-2836.  365(1), s 90- 108 . doi: 10.1016/j.jmb.2006.09.034
  • Berner, Jeanne-Marie; Muller, Christoph Rainer; Holden, Marit; Wang, Junbai; Hovig, Eivind & Myklebost, Ola (2006). Sampling effects on gene expression data from a human tumour xenograft. Scandinavian Journal of Laboratory Animal Science.  ISSN 0901-3393.  33, s 17- 34
  • Gulliksen, A; Solli, Lars Anders; Drese, KS; Karlsen, F; Sorensen, O; Karlsen, F; Rogne, H; Hovig, Johannes Eivind; Rogne, H; Hovig, E; Sirevåg, Reidun & Sirevag, R (2005). Parallel nanoliter detection of cancer markers using polymer microchips. Lab on a Chip.  ISSN 1473-0189.  5
  • Nygaard, Vigdis; Holden, Marit; Løland, Anders; Langaas, Mette; Myklebost, Ola & Hovig, Eivind (2005). Limitations of mRNA amplification from small-size cell samples. BMC Genomics.  ISSN 1471-2164.  (6), s 147 . doi: 10.1186/1471-2164-6-147 Show summary
  • Tøstesen, Eivind; Jerstad, GI & Hovig, Johannes Eivind (2005). Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles. Nucleic Acids Research.  ISSN 0305-1048.  33, s W573- W576 . doi: 10.1093/nar/gki424
  • Bjørge, Tone; Lie, Kathrine; Hovig, Eivind; Gislefoss, Randi E.; Hansen, S; Jellum, Egil; Langseth, H; Nustad, Kjell; Tropé, Claes Gøran & Dørum, Anne (2004). BRCA1 mutations in ovarian cancer and borderline tumours in Norway: a nested case-control study. British Journal of Cancer.  ISSN 0007-0920.  91(10), s 1829- 34 . doi: 10.1038/sj.bjc.6602199
  • Gulliksen, A; Solli, Christian; Solli, Lars; Karlsen, F; Rogne, H; Hovig, E; Hovig, Eivind; Nordstrøm, Trine; Nordstrom, T; Sirevag, R & Sirevåg, Reidun (2004). Real-time nucleic acid sequence-based amplification in nanoliter volumes. Analytical Chemistry.  ISSN 0003-2700.  76, s 9- 14
  • Liu, Fang; Jenssen, Tor-Kristian; Nygaard, Vegard; Sack, John & Hovig, Eivind (2004). FigSearch: a figure legend indexing and classificatioin systen. Bioinformatics.  ISSN 1367-4803.  20(16), s 2880- 2882 . doi: 10.1093/bioinformatics/bth316

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  • Aamdal, Steinar; Bentzen, Heidi Beate; Borge, Ole Johan; Erikstein, Bjørn K; Grimsgaard, Sameline; Hovig, Johannes Eivind; Myklebost, Ola & Widerberg, Ketil (2017). Åpne Nordens grenser for forskning og behandling. Aftenposten (morgenutg. : trykt utg.).  ISSN 0804-3116.
  • Simovski, Boris; Drabløs, Finn Sverre; Gundersen, Sveinung; Johansen, Morten; Domanska, Diana Ewa; Azab, Abdulrahman; Sandve, Geir Kjetil & Hovig, Johannes Eivind (2016). The Genomic HyperBrowser.
  • Hovig, Eivind & Rognes, Torbjørn (2015). Bioinformatikk - å forstå teksten, I: Dag Olav Hessen; Thore Lie & Nils Christian Stenseth (red.),  Mendels arv - Genetikkens æra.  Gyldendal Norsk Forlag A/S.  ISBN 978-82-05-45818-5.  Kapittel 13.  s 329 - 354
  • Lilleby, Wolfgang; Vlatkovic, Ljiljana; Meza, Leonardo Zepeda; Revheim, Mona Elisabeth & Hovig, Johannes Eivind (2015). Translocational renal cell carcinoma (t(6;11)(p21;q12) with transcription factor EB (TFEB) amplification and an integrated precision approach: A case report. Journal of Medical Case Reports.  ISSN 1752-1947.  9:281 . doi: 10.1186/s13256-015-0749-7
  • Drabløs, Finn; Nygård, Ståle; Hovig, Johannes Eivind; Våge, Dag Inge; Willassen, Nils Peder; Petersen, Kjell & Jonassen, Inge (2014). ELIXIR - An infrastructure for bioinformatics.
  • Fromm, Bastian; Worren, Merete Molton; Hahn, Christoph; Hovig, Johannes Eivind & Bachmann, Lutz (2013). Evolution of Parasitism in Flatworms Is Accompanied by Substantial Loss of Conserved microRNA Families and Increase of Novel microRNAs.
  • Hovig, Johannes Eivind; Nakken, S; Clancy, T; Paulsen, J; Gundersen, S; Lien, T; Glad, I; Nygard, S; Frigessi, A & Sandve, GK (2013). Bioinformatics in genomics. European Journal of Cancer.  ISSN 0959-8049.  49, s S45- S45
  • Lærdahl, Jon Kristen; Nygård, Ståle; Jonassen, Inge; Hovig, Johannes Eivind; Petersen, Kjell; Drabløs, Finn; Willassen, Nils Peder & Våge, Dag Inge (2013). The national technology platform for bioinformatics.
  • Nakken, Sigve; Vodák, Daniel; Fournous, Ghislain; Thomassen, Gard O Sundby & Hovig, Johannes Eivind (2013). Big challenges in personalized cancer medicine. META.  ISSN 1890-2987.  (2), s 8- 12 Show summary
  • Sandve, Geir Kjetil; Nekrutenko, Anton; Taylor, James & Hovig, Johannes Eivind (2013). Ten Simple Rules for Reproducible Computational Research. PloS Computational Biology.  ISSN 1553-734X.  9(10) . doi: 10.1371/journal.pcbi.1003285
  • Holden, Marit; Glad, Ingrid Kristine; Hauge, Håvard Hildeng; Hovig, Eivind & Liestøl, Knut (2012). Image restoration and analysis of biomolecular radioactivity images II. NR-notat. SAMBA/11/12.
  • Skotheim, Rolf Inge; Meza-Zepeda, Leonardo Andrés; Hovig, Eivind; Lønning, Per Eystein; Lothe, Ragnhild A & Myklebost, Ola (2012). Genomsekvensering for persontilpasset kreftbehandling. Tidsskrift for Den norske legeforening.  ISSN 0029-2001.  132, s 2406- 2408 . doi: 10.4045/tidsskr.12.0784
  • Lau, Corinna; Nygård, Ståle; Fure, Hilde; Lappegård, Knut Tore; Brekke, Ole Lars; Hovig, Eivind & Mollnes, Tom Eirik (2011). Challenging pattern recognition cross-talk: A gene profiling perspective of human Gram-negative bacteriaemia. Molecular Immunology.  ISSN 0161-5890.  48(14), s 1691- 1691 . doi: 10.1016/j.molimm.2011.06.297
  • Nygård, Ståle; Reitan, Trond; Clancy, Trevor; Nygaard, Vegard; BJØRNSTAD, JOHANNES; Tønnessen, Theis; Christensen, Geir Arve & Hovig, Eivind (2011). Identifying pathogenic signaling and regulatory networks by integrating microarray data with prior knowledge.
  • Nygård, Ståle; Reitan, Trond; Clancy, Trevor; Nygaard, Vegard; BJØRNSTAD, JOHANNES; Tønnessen, Theis; Christensen, Geir Arve & Hovig, Eivind (2011). Identifying pathogenic signaling and regulatory networks by integrating microarray data with prior knowledge.
  • Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne; Hovig, Eivind & Jonassen, Inge (2010). The FUGE Bioinformatics platform: a central platform in the FUGE2 period. MITAT. Minimally invasive therapy & allied technologies.  ISSN 1364-5706.  19, s 70- 71 . doi: 10.3109/13645706.2010.500867
  • Drabløs, Finn; Petersen, Kjell; Johansen, Jostein; Nygård, Ståle; Ahmad, Rafi; Smalås, Arne; Hovig, Eivind & Jonassen, Inge (2010). The FUGE Bioinformatics platform: a central platform in the FUGE2 period.
  • Nygård, Ståle; Nygaard, Vigdis; Clancy, Trevor; BJØRNSTAD, JOHANNES; Skrbic, Biljana; Tønnessen, Theis; Christensen, Geir Arve & Hovig, Eivind (2010). Integrating microarray gene expression data with prior knowledge about molecular interactions for identification of important heart failure pathways.
  • Bøe, Sigurd; Hovig, Eivind & Fodstad, Øystein (2009). Modulation of gene expression using natural and artificial nucleic acids combined with photochemical internalization technology.

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Published Nov. 4, 2010 1:58 PM - Last modified Sep. 12, 2017 1:04 PM