Ivar Grytten

English version of this page
Brukernavn
Besøksadresse Gaustadalléen 23B Ole Johan Dahls hus 0373 Oslo
Postadresse Postboks 1080 Blindern 0316 Oslo
Emneord: Genomics, Bioinformatics, Python, Teaching, Pangenomics, benchmarking, Simulation, data science

Publikasjoner

  • Grytten, Ivar; Rand, Knut Dagestad & Sandve, Geir Kjetil Ferkingstad (2022). KAGE: fast alignment-free graph-based genotyping of SNPs and short indels. Genome Biology. ISSN 1465-6906. 23(1). doi: 10.1186/s13059-022-02771-2.
  • Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Kanduri, Chakravarthi; Kompova, Radmila & Vazov, Nikolay Aleksandrov [Vis alle 41 forfattere av denne artikkelen] (2021). The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Nature Machine Intelligence. 3(11), s. 936–944. doi: 10.1038/s42256-021-00413-z.
  • Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan & Sandve, Geir Kjetil (2020). Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods. BMC Genomics. ISSN 1471-2164. 21. doi: 10.1186/s12864-020-6685-y. Fulltekst i vitenarkiv
  • Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie; Lucas, Christin & Vekterud, Kristin [Vis alle 15 forfattere av denne artikkelen] (2020). LXRα Regulates ChREBPα Transactivity in a Target Gene-Specific Manner through an Agonist-Modulated LBD-LID Interaction. Cells. ISSN 2073-4409. 9(5), s. 1–26. doi: 10.3390/cells9051214. Fulltekst i vitenarkiv
  • Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie Maria; Lucas, Christin & Vekterud, Kristin [Vis alle 15 forfattere av denne artikkelen] (2019). Open the LID: LXRα regulates ChREBPα transactivity in a target gene-specific manner through an agonist-modulated LBD-LID interaction. bioRxiv. ISSN 2692-8205. doi: 10.1101/2019.12.20.869974.
  • Salvatore, Stefania; Rand, Knut Dagestad; Grytten, Ivar; Ferkingstad, Egil; Domanska, Diana & Holden, Lars [Vis alle 10 forfattere av denne artikkelen] (2019). Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis. Briefings in Bioinformatics. ISSN 1467-5463. s. 1–8. doi: 10.1093/bib/bbz083.
  • Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2019). Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. PLoS Computational Biology. ISSN 1553-734X. 15(2), s. 1–13. doi: 10.1371/journal.pcbi.1006731. Fulltekst i vitenarkiv
  • Rand, Knut Dagestad; Grytten, Ivar; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2017). Coordinates and intervals in graph-based reference genomes. BMC Bioinformatics. ISSN 1471-2105. 18:263, s. 1–8. doi: 10.1186/s12859-017-1678-9. Fulltekst i vitenarkiv
  • Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman & Holden, Lars [Vis alle 25 forfattere av denne artikkelen] (2017). GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience. ISSN 2047-217X. 6(7), s. 1–12. doi: 10.1093/gigascience/gix032. Fulltekst i vitenarkiv
  • Børnich, Claus; Grytten, Ivar; Hovig, Johannes Eivind; Paulsen, Jonas; Cech, Martin & Sandve, Geir Kjetil (2016). Galaxy Portal: Interacting with the galaxy platform through mobile devices. Bioinformatics. ISSN 1367-4803. 32(11), s. 1743–1745. doi: 10.1093/bioinformatics/btw042.

Se alle arbeider i Cristin

  • Balaban, Gabriel; Grytten, Ivar; Rand, Knut Dagestad; Scheffer, Lonneke & Sandve, Geir Kjetil (2021). Ten simple rules for quick and dirty scientific programming. PLoS Computational Biology. ISSN 1553-734X. 17:e1008549(3), s. 1–15. doi: 10.1371/journal.pcbi.1008549.
  • Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie Maria; Lucas, Christin & Vekterud, Kristin [Vis alle 15 forfattere av denne artikkelen] (2019). LXRα interacts with the glucose-sensing transcription factor ChREBPα to regulate its transcriptional activity.
  • Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ulven, Stine Marie; Lucas, Christin & Bindesbøll, Christian [Vis alle 11 forfattere av denne artikkelen] (2018). LXRα interacts with the glucose-sensing transcription factor ChREBPα and increases its transcriptional activity.

Se alle arbeider i Cristin

Publisert 15. sep. 2015 12:44 - Sist endret 1. des. 2022 12:28