Fabrice Eroukhmanoff

Researcher

I am an evolutionary ecologist and geneticist, currently studying cases of contemporary evolution from a genomic perspective, while also focusing on hybridization and speciation processes. One of my projects studies population divergence and local adaptation in the Italian sparrow, a hybrid species, both in response to climatic variation and species interactions. I am also interested in (epi)genome evolution during range shifts, both in response to climate change or assisted colonization processes, and I use the Reed warbler as a model organism to tackle these questions in the future.

Tags: Divergence: neutral and adaptive, Genetic constraints, Local adaptation, Parallel evolution, Phenotypic integration, Reproductive isolation, Adaptation, Hybridization, Quantitative genetics, Speciation

Publications

Yazdi H. P., Rowe M., Ravinet M., Sætre G.-P., Guldvog C.Ø., Eroukhmanoff F., Marzal A., Magallanes S., Runemark A. Extensive transgressive gene expression in testis but not ovary in the homoploid hybrid Italian sparrow. Molecular Ecology (in press).

Cuevas, A.C., Eroukhmanoff, F., Ravinet, M., Sætre, G.P., Runemark A. 2022. Predictors of genomic differentiation within a hybrid taxon. PLoS Genetics 18 (2), e1010027.

Lo Cascio Sætre, C., Eroukhmanoff, F., Rönkä, K., Kluen, E., Thorogood, R., Torrance, J., Tracey, A., Chow, W., Pelan, S., Howe, K.,  Jakobsen, K.S., Tørresen, O.K. 2021. A Chromosome-level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus). Genome Biology and Evolution 13 (9), evab212.

Cuevas, A.C., Ravinet, M., Sætre, G.P., Eroukhmanoff, F. 2021. Intraspecific genomic variation and local adaptation in a young hybrid species. Molecular Ecology 30, 791-809.

Rowe, M., Whittington, E., Borziak,K., Ravinet, M., Eroukhmanoff, F., Sætre, G-P.,Dorus S. 2020. Molecular diversification of the seminal fluid proteome in a recently diverged passerine species pair. Molecular Biology and Evolution 37, 488-506

Cramer, ERA, Rowe, M., Eroukhmanoff, F., Lifjeld, J.T., Sætre, G.P., Johnsen A. 2019. Measuring sperm swimming performance in birds: effects of dilution, suspension medium, mechanical agitation, and sperm number. Journal of Ornithology 160, 1053-1063.

Runemark A. , Eroukhmanoff, F., Bolanos A.N., Hermansen, J.S., Meier J. 2018. Hybridization, sex specific genomic architecture and local adaptation. Philosophical Transactions of the Royal Society B doi: 10.1098/rstb.2017.0419.

Lo Cascio Sætre, C., C. Coleiro, M. Austad, M. Gauci, G.-P. Sætre, K.L. Voje, F. Eroukhmanoff. 2018. Reply to ‘Inconclusive evidence for rapid adaptive evolution’. Nature Communications doi.org/10.1038/s41467-018-05120-9

Runemark, A. , Fernandez L.P., Eroukhmanoff, F., G.-P. Sætre. 2018. Genomic contingencies and the potential for local adaptation in a hybrid species. The American Naturalist 192, 10-22.

RunemarkA. , C.N. Trier, F. Eroukhmanoff, J.S. Hermansen, M. Matschiner, M. Ravinet, T.O. Elgvin, G.-P. Sætre . 2018. Variation and constraints in hybrid genome formation. Nature Ecology and Evolution 2:549556 doi.10.1038/s41559-017-0437-7.

G.-P. Sætre, A. Cuevas, J.S. Hermansen, T.O. Elgvin, L. Pineiro Fernandez, S.A. Sæther, Lo Cascio Sætre, F. Eroukhmanoff. 2017. Rapid polygenic response to secondary contact in a hybrid species. Proceedings of the Royal Society B 284: 20170365.

Lo Cascio Sætre, C., C. Coleiro, M. Austad, M. Gauci, G.-P. Sætre, K.L. Voje, F. Eroukhmanoff. 2017. Rapid adaptive phenotypic change following colonization of a newly restored habitat. Nature Communications doi:10.1038/ncomms14159

Eroukhmanoff, F, M. Rowe, ERA Cramer, F Haas, JS. Hermansen, A Runemark, A Johnsen, & G-Pr Sætre. 2016. Experimental evidence for ovarian hypofunction in sparrow hybrids. Avian Research 7, 3 DOI: 10.1186/s40657-016-0038-1.

Green Karlsson, K., F. Eroukhmanoff, Harris, S., E. I. Svensson & L. B. Pettersson. 2016. Rapid changes in genetic architecture of behavioural syndromes following colonisation of a novel environment. Journal of Evolutionary Biology 29, 144-152.

Ole Seehausen, Roger K Butlin, Irene Keller, Catherine E Wagner, Janette W Boughman, Paul A Hohenlohe, Catherine L Peichel, Glenn-Peter Saetre, Claudia Bank, Ake Brännström, Alan Brelsford, Chris S Clarkson, Fabrice Eroukhmanoff, Jeffrey L Feder, Martin C Fischer, Andrew D Foote, Paolo Franchini, Chris D Jiggins, Felicity C Jones, Anna K Lindholm, Kay Lucek, Martine E Maan, David A Marques, Simon H Martin, Blake Matthews, Joana I Meier, Markus Möst, Michael W Nachman, Etsuko Nonaka, Diana J Rennison, Julia Schwarzer, Eric T Watson, Anja M Westram, Alex Widmer. 2014. Genomics and the origin of species. Nature Reviews Genetics 15, 176–192.

Eroukhmanoff, F., Elgvin, T.O., Gonzalez Rojas, M. F., Haas, F., Hermansen, J.S. and G.-P. Saetre. 2014. Effects of species interaction on beak integration in an avian hybrid species complex. Evolutionary Biology DOI 10.1007/s11692-014-9278-3.

Cramer, E.R.A., Laskemoen, T., Eroukhmanoff, F., Haas, F., Hermansen, J.S.,Lifjeld, J.,  Rowe, M., Sætre, G.-P-, Jensen, A. 2014. Testing for  potential post-mating pre-zygotic isolation in a passerine species pair. Behavioral Ecology and Sociobiology. DOI 10.1007/s00265-014-1724-9.

Abbott R, Albach D, Ansell S, Arntzen J. W., Baird SJE., Bierne N, Boughman J, Brelsford A, Buerkle CA, Buggs CA, Butlin RK, Dieckmann U, Eroukhmanoff F, Grill A, Helms Cahan S, Hermansen JS, Hewitt G, Hudson A, Jiggins C, Jones J, Keller B, Marczewski T, Mallet J, Martinez-Rodriguez P, Möst M, Mullen S, Nichols R, Nolte AW, Parisod C, Pfennig K, Rice AM, Ritchie MG, Seifert B, Smadja CM, Stelkens R, Szymura JM, Väinöla R, Wolf JBW, Zinner D. 2013. Hybridization and speciation. Journal of Evolutionary Biology 26: 229-246.

Eroukhmanoff, F., Hermansen, J. S., Bailey, R. I., Saether, S. A. and G.-P. Saetre. 2013. Local adaptation within a hybrid species. Heredity 111: 286-292.

Eroukhmanoff, F., Bailey RI & Sætre G-P. 2013. Hybridization and genomeevolution I: The role of contingency during hybrid speciation.Current Zoology 59:667-674

Bailey RI, Eroukhmanoff, F. & Sætre G-P. 2013. Hybridization and genome evolution II: Mechanisms of species divergence and their effects on evolution in hybrids. Current Zoology 59: 675-685.

Eroukhmanoff, F. & E.I. Svensson. 2011. Evolution and stability of the G-matrix during colonization of a novel environement. Journal of Evolutionary Biology 24: 1363-1373.

Eroukhmanoff, F., Hargeby, A., & E. I. Svensson. 2011. The importance of different reproductive barriers during phenotypic divergence in isopod ecotypes. Evolution 65:  2631-2640.

Harris, S., F. Eroukhmanoff, K. Karlsson, E. I. Svensson & L. B. Pettersson. 2011. Changes in behavioural trait integration following rapid ecotype divergence in an aquatic isopod. Journal of Evolutionary Biology 24. 1887-1896.

Svensson, E. I., Eroukhmanoff F., Karlsson, K., Runemark, A. and A. Brodin. 2010. A role for learning in population divergence of mate preference. Evolution 64:3101-3113.

Karlsson, K., F. Eroukhmanoff & E. I. Svensson. 2010. Phenotypic Plasticity towards the Social Environment: Effects of Density and Sex Ratio on Mating Behaviour Following Ecotype Divergence. PLoS ONE 5(9): e12755. doi:10.1371/journal.pone.0012755

Karlsson, K., F. Eroukhmanoff, R. Härdling & E. I. Svensson. 2010. Parallel divergence in mating behaviour in an aquatic isopod. Journal of Evolutionary Biology 12: 2540-2549.

Eroukhmanoff, F., Hargeby, A., Nowshiravani Arnberg N., Hellgren, O., Bensch, S. & E. I. Svensson. 2009. Parallelism and historical contingency during rapid ecotype divergence in an isopod. Journal of Evolutionary Biology 22: 1098-1110.

Eroukhmanoff, F., Outomuro, D., Ocharan, F. J. & E. I.Svensson. 2009. Patterns of phenotypic divergence in the wing covariance structure of calopterygid damselflies.  Evolutionary Biology 36:214-224.

Eroukhmanoff, F. 2009. Just how much is the G-matrix actually constraining adaptation? Evolutionary Biology 36:323-326.

Eroukhmanoff, F. & E. I.Svensson. 2009. Contemporary parallel diversification, antipredator adaptations and phenotiypic integration in an aquatic isopod. PLoS ONE 4(7): e6173. doi:10.1371/journal.pone.0006173.

Eroukhmanoff, F., Hargeby, A., & E. I. Svensson. 2009. Rapid adaptive divergence between ecotypes of an aquatic isopod inferred from FST-QSTanalyses. Molecular Ecology 18:4912–4923.

Eroukhmanoff, F. & E. I. Svensson. 2008. Phenotypic integration and conserved covariance structure in calopterygid damselflies. Journal of Evolutionary Biology 21: 514-526.

Svensson, E.I., Karlsson, K., Friberg, M & F. Eroukhmanoff. 2007. Gender differences in species recognition and the evolution of asymmetric sexual isolation. Current  Biology 17: 1-5.

Svensson, E. I., Eroukhmanoff, F. & M. Friberg,. 2006. Effects of natural and sexual selection on adaptive population divergence and premating isolation in a damselfly. Evolution 60:1242-1253.

 

  • Cuevas, Angelica; Eroukhmanoff, Fabrice; Ravinet, Mark; Sætre, Glenn-Peter & Runemark, Anna (2022). Predictors of genomic differentiation within a hybrid taxon. PLoS Genetics. ISSN 1553-7390. 18(2). doi: 10.1371/journal.pgen.1010027.
  • Sætre, Camilla Lo Cascio; Eroukhmanoff, Fabrice; Rönkä, Katja; Kluen, Edward; Thorogood, Rose & Torrance, James [Show all 12 contributors for this article] (2021). A Chromosome-Level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus). Genome Biology and Evolution (GBE). ISSN 1759-6653. 13(9), p. 1–7. doi: 10.1093/gbe/evab212. Full text in Research Archive
  • Cuevas, Angelica; Ravinet, Mark; Sætre, Glenn-Peter & Eroukhmanoff, Fabrice (2020). Intraspecific genomic variation and local adaptation in a young hybrid species. Molecular Ecology. ISSN 0962-1083. 00, p. 791–809. doi: 10.1111/mec.15760. Full text in Research Archive
  • Rowe, Melissah; Whittington, Emma; Borziak, Kirill; Ravinet, Mark; Eroukhmanoff, Fabrice & Sætre, Glenn-Peter [Show all 7 contributors for this article] (2019). Molecular diversification of the seminal fluid proteome in a recently diverged passerine species pair. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 37(2), p. 488–506. doi: 10.1093/molbev/msz235. Full text in Research Archive
  • Cramer, Emily Rebecca A; Rowe, Melissah; Eroukhmanoff, Fabrice; Lifjeld, Jan Terje; Sætre, Glenn-Peter & Johnsen, Arild (2019). Measuring sperm swimming performance in birds: effects of dilution, suspension medium, mechanical agitation, and sperm number. Journal of Ornithology = Journal fur Ornithologie. ISSN 0021-8375. p. 1–11. doi: 10.1007/s10336-019-01672-9. Full text in Research Archive
  • Runemark, Anna; Eroukhmanoff, Fabrice; Nava-Bolaños, Angela; Hermansen, Jo Skeie & Meier, Joana I (2018). Hybridization, sex-specific genomic architecture and local adaptation. Philosophical Transactions of the Royal Society of London. Biological Sciences. ISSN 0962-8436. 373(1757), p. 1–10. doi: 10.1098/rstb.2017.0419.
  • Runemark, Anna; Trier, Cassandra Nicole; Eroukhmanoff, Fabrice; Hermansen, Jo Skeie; Matschiner, Michael & Ravinet, Mark [Show all 8 contributors for this article] (2018). Variation and constraints in hybrid genome formation. Nature Ecology and Evolution. ISSN 2397-334X. 2(3), p. 549–556. doi: 10.1038/s41559-017-0437-7.
  • Runemark, Anna; Fernández, Laura Piñeiro; Eroukhmanoff, Fabrice & Sætre, Glenn-Peter (2018). Genomic contingencies and the potential for local adaptation in a hybrid species. The American Naturalist. ISSN 0003-0147. 192(1), p. 10–22. doi: 10.1086/697563. Full text in Research Archive
  • Sætre, Camilla Lo Cascio; Coleiro, Charles; Austad, Martin; Gauci, Mark; Sætre, Glenn-Peter & Voje, Kjetil L. [Show all 7 contributors for this article] (2017). Rapid adaptive phenotypic change following colonization of a newly restored habitat. Nature Communications. ISSN 2041-1723. 8(14159), p. 1–6. doi: 10.1038/ncomms14159. Full text in Research Archive
  • Sætre, Glenn-Peter; Cuevas Pulido, Angelica Maria; Hermansen, Jo Skeie; Elgvin, Tore Oldeide; Fernández, Laura Piñeiro & Sæther, Stein Are [Show all 8 contributors for this article] (2017). Rapid polygenic response to secondary contact in a hybrid species. Proceedings of the Royal Society of London. Biological Sciences. ISSN 0962-8452. 284(1853). doi: 10.1098/rspb.2017.0365.
  • Green, Kristina Karlsson; Eroukhmanoff, Fabrice; Harris, Sanna; Pettersson, Lars B. & Svensson, Erik I. (2016). Rapid changes in genetic architecture of behavioural syndromes following colonization of a novel environment. Journal of Evolutionary Biology. ISSN 1010-061X. 29(1), p. 144–152. doi: 10.1111/jeb.12769.
  • Eroukhmanoff, Fabrice; Rowe, Melissah; Cramer, Emily Rebecca A; Haas, Fredrik; Hermansen, Jo Skeie & Runemark, Anna [Show all 8 contributors for this article] (2016). Experimental evidence for ovarian hypofunction in sparrow hybrids. Avian Research. ISSN 2053-7166. 7. doi: 10.1186/s40657-016-0038-1.
  • Seehausen, Ole; Butlin, Roger K.; Keller, Irene; Wagner, Catherine E.; Boughman, Janette W. & Hohenlohe, Paul A. [Show all 34 contributors for this article] (2014). Genomics and the origin of species. Nature reviews genetics. ISSN 1471-0056. doi: 10.1038/nrg3644.
  • Eroukhmanoff, Fabrice; Elgvin, Tore Oldeide; Gonzales Rojas, Maria Fernanda; Haas, Fredrik; Hermansen, Jo Skeie & Sætre, Glenn-Peter (2014). Effect of Species Interaction on Beak Integration in an Avian Hybrid Species Complex. Evolutionary Biology. ISSN 0071-3260. 41(3), p. 452–458. doi: 10.1007/s11692-014-9278-3.
  • Cramer, Emily Rebecca A; Laskemoen, Terje; Eroukhmanoff, Fabrice; Haas, Fredrik; Hermansen, Jo Skeie & Lifjeld, Jan Terje [Show all 9 contributors for this article] (2014). Testing a post-copulatory pre-zygotic reproductive barrier in a passerine species pair. Behavioral Ecology and Sociobiology. ISSN 0340-5443. 68(7), p. 1133–1144. doi: 10.1007/s00265-014-1724-9.
  • Eroukhmanoff, Fabrice; Hermansen, Jo Skeie; Bailey, Richard Ian; Sæther, Stein Are & Sætre, Glenn-Peter (2013). Local adaptation within a hybrid species. Heredity. ISSN 0018-067X. 111(4), p. 286–292. doi: 10.1038/hdy.2013.47.
  • Bailey, Richard Ian; Eroukhmanoff, Fabrice & Sætre, Glenn-Peter (2013). Hybridization and genome evolution II: Mechanisms of species divergence and their effects on evolution in hybrids. Current Zoology. ISSN 1674-5507. 59(5), p. 675–685. doi: 10.1093/czoolo/59.5.675.
  • Eroukhmanoff, Fabrice; Bailey, Richard Ian & Sætre, Glenn-Peter (2013). Hybridization and genome evolution I: The role of contingency during hybrid speciation. Current Zoology. ISSN 1674-5507. 59(5), p. 667–674. doi: 10.1093/czoolo/59.5.667.
  • Abbott, R; Albach, D; Ansell, S; Arntzen, JW; Baird, SJE & Bierne, N [Show all 39 contributors for this article] (2013). Hybridization and speciation. Journal of Evolutionary Biology. ISSN 1010-061X. 26(2), p. 229–246. doi: 10.1111/j.1420-9101.2012.02599.x.
  • Eroukhmanoff, Fabrice; Hargeby, Anders & Svensson, Erik I. (2011). THE ROLE OF DIFFERENT REPRODUCTIVE BARRIERS DURING PHENOTYPIC DIVERGENCE OF ISOPOD ECOTYPES. Evolution. ISSN 0014-3820. 65(9), p. 2631–2640. doi: 10.1111/j.1558-5646.2011.01327.x.
  • Harris, S.; Eroukhmanoff, Fabrice; Green, K. K.; Svensson, E. I. & Pettersson, L. B. (2011). Changes in behavioural trait integration following rapid ecotype divergence in an aquatic isopod. Journal of Evolutionary Biology. ISSN 1010-061X. 24(9), p. 1887–1896. doi: 10.1111/j.1420-9101.2011.02322.x.
  • Eroukhmanoff, Fabrice & Svensson, I. (2011). Evolution and stability of the G-matrix during the colonization of a novel environment. Journal of Evolutionary Biology. ISSN 1010-061X. 24(6), p. 1363–1373. doi: 10.1111/j.1420-9101.2011.02270.x.

View all works in Cristin

  • Fredriksen, Simen & Eroukhmanoff, Fabrice (2016). The avian ejaculate-associated microbiome: inter and intraspecific variation and the potential role of geography.
  • Eroukhmanoff, Fabrice (2016). Rapid evolution of character displacement in a hybrid species .
  • Eroukhmanoff, Fabrice (2015). The evolutionary potential of a hybrid species.
  • Eroukhmanoff, Fabrice (2014). Long-term persistence of genetic incompatibilities and genomics constraints in a hybrid species.
  • Piñeiro Fernández, Laura; Sætre, Glenn-Peter; Eroukhmanoff, Fabrice & Runemark, Anna (2014). Beak shape variation in a homoploid hybrid species: effects of ecology, genetic composition and species interactions.
  • Eroukhmanoff, Fabrice; Hermansen, Jo Skeie; Elgvin, Tore Oldeide; Sæther, Stein Are & Sætre, Glenn-Peter (2014). Genome wide signature of character displacement in a hybrid species.
  • Cramer, Emily Rebecca A; Ålund, Murielle; Laskemoen, Terje; Eroukhmanoff, Fabrice; Eybert, Marie-Christine & Haas, Fredrik [Show all 12 contributors for this article] (2014). Post-copulatory, pre-zygotic isolating barriers in passerine birds?
  • Cramer, Emily Rebecca A; Laskemoen, Terje; Eroukhmanoff, Fabrice; Haas, Fredrik; Hermansen, Jo Skeie & Lifjeld, Jan Terje [Show all 9 contributors for this article] (2013). Testing a post-copulatory pre-zygotic reproductive barrier in a passerine species pair.
  • Cramer, Emily Rebecca A; Laskemoen, Terje; Eroukhmanoff, Fabrice; Haas, Fredrik; Hermansen, Jo Skeie & Lifjeld, Jan Terje [Show all 9 contributors for this article] (2013). An experimental test of a potential post-copulatory pre-zygotic reproductive barrier in a passerine species pair.
  • Eroukhmanoff, Fabrice (2013). The genetic mosaic of divergence in a hybrid species.
  • Eroukhmanoff, Fabrice (2013). The effects of gene flow on genetic constraints at different stages of speciation.
  • Eroukhmanoff, Fabrice (2013). The beak of the sparrow: a story of hybridization and species interactions.

View all works in Cristin

Published May 26, 2011 9:48 PM - Last modified Apr. 2, 2022 7:48 AM

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