Analysing the 290 individuals of Boreogadus saida dataset Dataset: QD5, MAF 0.01, prune r2=0.2, w=100Kb  

[1] “/Users/snhoff/Desktop/analysis_2022/boreo_290/03_lostruct”

Overview

Chromosomal inversions three discrete clusters

Chr3_aen_34255000_36055000

Chr4_aen_1840000_2150000

Chr4_aen_3000000_4000000

Chr5_aen_18200000_19200000

Chr9_aen_22050000_24100000

Chr10_aen_0_8600000

Chr12_aen_0_3000000

Chr13_aen_0_4000000

Chr13_aen_7000000_16000000

Chr14_aen_5000000_11000000

Chr16_aen_2400000_2700000

Chr17_aen_6500000_12000000

Chromosomal inversions six cluster - three hom clusters

Chr2_aen_23000000_38000000

Chr2_aen_23000000_38000000

[1] 5

region

[1] 5

Chr6_aen_19000000_23500000

Chr6_aen_19000000_23500000

test find.cluster()

[1] 5

Chr6_aen_23000000_25500000

Chr6_aen_23000000_25500000

[1] 5 [1] 5

region

[1] 5

Chr7_aen_1_3000000

Chr7_aen_13000000_17500000

Chr7_aen_13000000_17500000

[1] 5 [1] 5 [1] 5

region

[1] 5

Chr12_aen_12500000_14600000

Chr15_aen_10000000_19000000

Chr16_aen_5800000_9500000

Chr16_aen_5800000_9500000

[1] 5 [1] 5

region

[1] 5

Chr18_aen_1_1000000