Michael Matschiner

Image of Michael Matschiner
Username
Visiting address Blindernveien 31 None 0371 OSLO
Postal address Postboks 1066 Blindern 0316 OSLO

Academic Interests

I’m currently working as a postdoc on a mobility project that is hosted by the University of Zurich, Switzerland, during the first two years (2019-20) and by CEES for the third year (2021). In this work I'm investigating the role of hybridization in vertebrate speciation on the basis of phylogenomic approaches.

I have previously been employed as a researcher by CEES from 2013-2017, working as a bioinformatician in the AquaGenome project.

Publications

  • Fang, Bohao; Merilä, Juha; Matschiner, Michael & Momigliano, Paolo (2020). Estimating uncertainty in divergence times among three-spined stickleback clades using the multispecies coalescent. Molecular Phylogenetics and Evolution.  ISSN 1055-7903.  142, s 106646
  • Bouckaert, Remco; Vaughan, Timothy G; Barrido-Sottani, Joëlle; Duchêne, Sebastián; Fourment, Mathieu; Gavryushkina, Alexandra; Heled, Joseph; Jones, Graham; Kühnert, Denise; De Maio, Nicola; Matschiner, Michael; Mendes, Fábio; Müller, Nicola; Ogilvie, Huw; du Plessis, Louis; Popinga, Alex; Rambaut, Andrew; Rasmussen, David; Siveroni, Igor; Suchard, Marc A.; Wu, Chieh-Hsi; Xie, Dong; Zhang, Chi; Stadler, Tanja & Drummond, Alexei (2019). BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology.  ISSN 1553-734X.  15(4)
  • Ceballos, Santiago; Roesti, Marius; Matschiner, Michael; Fernandez, Daniel A; Damerau, Malte; Hanel, Reinhold & Salzburger, Walter (2019). Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries. BMC Evolutionary Biology.  ISSN 1471-2148.  19(1), s 1- 14 . doi: 10.1186/s12862-019-1345-z
  • Matschiner, Michael (2019). Gondwanan vicariance or trans-Atlantic dispersal of cichlid fishes: a review of the molecular evidence. Hydrobiologia.  ISSN 0018-8158.  832(1), s 9- 37
  • Matschiner, Michael (2019). Selective Sampling of Species and Fossils Influences Age Estimates Under the Fossilized Birth-Death Model. Frontiers in Genetics.  ISSN 1664-8021. . doi: 10.3389/fgene.2019.01064
  • Matschiner, Michael & Salzburger, Walter (2019). Evolution: Genomic Signatures of Mimicry and Mimicry of Genomic Signatures. Current Biology.  ISSN 0960-9822.  29, s R363- R365
  • Musilova, Zuzana; Cortesi, Fabio; Matschiner, Michael; Davies, Wayne I. L.; Patel, Jagdish Suresh; Stieb, Sara M.; De Busserolles, Fanny; Malmstrøm, Martin; Tørresen, Ole K.; Brown, Celeste J.; Mountford, Jessica K.; Hanel, Reinhold; Stenkamp, Deborah L.; Jakobsen, Kjetill Sigurd; Carleton, Karen L.; Jentoft, Sissel; Marshall, Justin & Salzburger, Walter (2019). Vision using multiple distinct rod opsins in deep-sea fishes. Science.  ISSN 0036-8075.  364(6440), s 588- 592 . doi: 10.1126/science.aav4632
  • Varadharajan, Srinidhi; Rastas, Pasi; Löytynoja, Ari; Matschiner, Michael; Calboli, Federico C. F.; Guo, Baocheng; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd & Merilä, Juha (2019). A high-quality assembly of the nine-spined stickleback (Pungitius pungitius) genome. Genome Biology and Evolution.  ISSN 1759-6653.
  • Langangen, Øystein; Färber, Leonie Anette; Stige, Leif Christian; Diekert, Florian Klaus; Barth, Julia Maria Isis; Matschiner, Michael; Berg, Paul Ragnar; Star, Bastiaan; Stenseth, Nils Christian; Jentoft, Sissel & Durant, Joel Marcel (2018). Ticket to spawn: Combining economic and genetic data to evaluate the effect of climate and demographic structure on spawning distribution in Atlantic cod. Global Change Biology.  ISSN 1354-1013.  25(1), s 134- 143 . doi: 10.1111/gcb.14474
  • Malmstrøm, Martin; Britz, Ralf; Matschiner, Michael; Tørresen, Ole K.; Hadiaty, Renny Kurnia; Yaakob, Norsham; Tan, Heok Hui; Jakobsen, Kjetill Sigurd; Salzburger, Walter & Rüber, Lukas (2018). The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes. Genome Biology and Evolution.  ISSN 1759-6653.  10(4), s 1088- 1103 . doi: 10.1093/gbe/evy058
  • Runemark, Anna; Trier, Cassandra Nicole; Eroukhmanoff, Fabrice; Hermansen, Jo Skeie; Matschiner, Michael; Ravinet, Mark; Elgvin, Tore Oldeide & Sætre, Glenn-Peter (2018). Variation and constraints in hybrid genome formation. Nature Ecology and Evolution.  ISSN 2397-334X.  2(3), s 549- 556 . doi: 10.1038/s41559-017-0437-7
  • Stange, Madlen; Sanchez-Villagra, Marcelo R; Salzburger, Walter & Matschiner, Michael (2018). Bayesian divergence-time estimation with genome-wide single-nucleotide polymorphism data of sea catfishes (Ariidae) supports miocene closure of the Panamanian Isthmus. Systematic Biology.  ISSN 1063-5157.  67(4), s 681- 699 . doi: 10.1093/sysbio/syy006
  • Toljagic, Olja; Voje, Kjetil L.; Matschiner, Michael; Liow, Lee Hsiang & Hansen, Thomas F (2018). Millions of Years Behind: Slow Adaptation of Ruminants to Grasslands. Systematic Biology.  ISSN 1063-5157.  67(1), s 145- 157 . doi: 10.1093/sysbio/syx059
  • Baalsrud, Helle Tessand; Voje, Kjetil L.; Tørresen, Ole Kristian; Solbakken, Monica Hongrø; Matschiner, Michael; Malmstrøm, Martin; Hanel, Reinhold; Salzburger, Walter; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2017). Evolution of Hemoglobin Genes in Codfishes Influenced by Ocean Depth. Scientific Reports.  ISSN 2045-2322.  7, s 1- 10 . doi: doi:10.1038/s41598-017-08286-2 Full text in Research Archive. Show summary
  • Barth, Julia Maria Isis; Damerau, Malte; Matschiner, Michael; Jentoft, Sissel & Hanel, Reinhold (2017). Genomic Differentiation and Demographic Histories of Atlantic and Indo-Pacific Yellowfin Tuna (Thunnus albacares) Populations. Genome Biology and Evolution.  ISSN 1759-6653.  9(4), s 1084- 1098 . doi: 10.1093/gbe/evx067 Full text in Research Archive.
  • Malmstrøm, Martin; Matschiner, Michael; Tørresen, Ole Kristian; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2017). Whole genome sequencing data and de novo draft assemblies for 66 teleost species. Scientific Data.  ISSN 2052-4463.  4, s 1- 13 . doi: 10.1038/sdata.2016.132 Full text in Research Archive.
  • Matschiner, Michael; Musilová, Zuzana; Barth, Julia Maria Isis; Starostová, Zuzana; Salzburger, Walter; Steel, Mike & Bouckaert, Remco (2017). Bayesian phylogenetic estimation of clade ages supports trans-Atlantic dispersal of cichlid fishes. Systematic Biology.  ISSN 1063-5157.  66(1), s 3- 22 . doi: 10.1093/sysbio/syw076 Full text in Research Archive. Show summary
  • Gante, Hugo F; Matschiner, Michael; Malmstrøm, Martin; Jakobsen, Kjetill Sigurd; Jentoft, Sissel & Salzburger, Walter (2016). Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika. Molecular Ecology.  ISSN 0962-1083.  25(24), s 6143- 6161 . doi: 10.1111/mec.13767 Show summary
  • Malmstrøm, Martin; Matschiner, Michael; Tørresen, Ole Kristian; Star, Bastiaan; Snipen, Lars-Gustav; Hansen, Thomas F; Baalsrud, Helle Tessand; Nederbragt, Alexander Johan; Hanel, Reinhold; Salzburger, Walter; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2016). Evolution of the immune system influences speciation rates in teleost fishes. Nature Genetics.  ISSN 1061-4036.  48(10), s 1204- 1210 . doi: 10.1038/ng.3645 Full text in Research Archive.
  • Matschiner, Michael (2016). Fitchi: Haplotype genealogy graphs based on the Fitch algorithm. Bioinformatics.  ISSN 1367-4803.  32(8), s 1250- 1252 . doi: 10.1093/bioinformatics/btv717
  • Meyer, Britta S.; Matschiner, Michael & Salzburger, Walter (2016). Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes. Systematic Biology.  ISSN 1063-5157.  66(4), s 531- 550 . doi: 10.1093/sysbio/syw069 Show summary
  • Colombo, Marco; Damerau, Malte; Hanel, Reinhold; Salzburger, Walter & Matschiner, Michael (2015). Diversity and disparity through time in the adaptive radiation of Antarctic notothenioid fishes. Evolutionary biology.  ISSN 0071-3260.  28, s 376- 394 . doi: 10.1111/jeb.12570
  • Matschiner, Michael; Colombo, Marco; Damerau, Malte; Ceballos, Santiago; Hanel, Reinhold & Salzburger, Walter (2015). The Adaptive Radiation of Notothenioid Fishes in the Waters of Antarctica, In Rüdiger Riesch; Michael Tobler & Martin Plath (ed.),  Extremophile Fishes.  Springer.  ISBN 978-3-319-13362-1.  The Adaptive Radiation of Notothenioid Fishes in the Waters of Antarctica.  s 35 - 57
  • Meyer, Britta S.; Matschiner, Michael & Salzburger, Walter (2015). A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach. Molecular Phylogenetics and Evolution.  ISSN 1055-7903.  83, s 56- 71 . doi: 10.1016/j.ympev.2014.10.009

View all works in Cristin

  • Matschiner, Michael (2019). Accuracy and precision of phylogenomic divergence-time estimates.
  • Reinar, William Brynildsen; Tørresen, Ole K.; Matschiner, Michael; Jentoft, Sissel; Nederbragt, Alexander Johan & Jakobsen, Kjetill Sigurd (2018). The impact of repetitive DNA on speciation rates in teleost fish.
  • Barth, Julia Maria Isis; Star, Bastiaan; Matschiner, Michael; André, Carl; Knutsen, Halvor; Bradbury, Ian; Dierking, Jan; Petereit, Christoph; Righton, David; Metcalfe, Julian; Jakobsen, Kjetill Sigurd; Olsen, Esben Moland & Jentoft, Sissel (2017). Chromosomal rearrangements as barriers to homogenization in highly mobile fish.
  • Barth, Julia Maria Isis; Star, Bastiaan; Matschiner, Michael; André, Carl; Knutsen, Halvor; Bradbury, Ian; Dierking, Jan; Petereit, Christoph; Righton, David; Metcalfe, Julian; Jakobsen, Kjetill Sigurd; Olsen, Esben Moland & Jentoft, Sissel (2017). Chromosomal rearrangements as barriers to homogenization in highly mobile fish.
  • Matschiner, Michael (2017). Phylogenetic dating of cichlid radiations.
  • Matschiner, Michael; Star, Bastiaan; Barth, Julia Maria Isis; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2017). Genomic rearrangements a phylogenetic approach.
  • Barth, Julia Maria Isis; Star, Bastiaan; Matschiner, Michael; Berg, Paul Ragnar; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2016). Ancient genomic variation separates Atlantic cod ecotypes; implications for management.
  • Matschiner, Michael (2015). Inversions or Introgression: The origin of high-divergence genomic regions in Atlantic cod.
  • Star, Bastiaan; Jentoft, Sissel; Matschiner, Michael; Nederbragt, Alexander Johan; Kjesbu, Olav Sigurd; Berg, Paul Ragnar; Bradbury, Ian R.; Pampoulie, Christophe; Hansen, Marianne Helén Selander; Skage, Morten; Jakobsen, Kjetill Sigurd & Stenseth, Nils Christian (2015). Does historic DNA provide genomic evidence for recent selection in Atlantic cod?.
  • Matschiner, Michael; Star, Bastiaan; Berg, Paul Ragnar; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Hansen, Marianne Helén Selander; Skage, Morten; Kjesbu, Olav Sigurd; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2014). Population differentiation and local adaptation in Atlantic cod.

View all works in Cristin

Published Oct. 3, 2013 3:45 PM - Last modified Nov. 7, 2019 10:43 PM