Michael Matschiner

Image of Michael Matschiner
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Visiting address Blindernveien 31 0371 Oslo
Postal address Postboks 1066 Blindern 0316 Oslo

Academic Interests

I’m currently working as a postdoc on a mobility project that is hosted by the University of Zurich, Switzerland, during the first two years (2019-20) and by CEES for the third year (2021). In this work I'm investigating the role of hybridization in vertebrate speciation on the basis of phylogenomic approaches.

I have previously been employed as a researcher by CEES from 2013-2017, working as a bioinformatician in the AquaGenome project.

Publications

  • Barth, Julia Maria Isis; Matschiner, Michael; Gubili, Chrysoula; Tørresen, Ole K.; Watanabe, Shun; Egger, Bernd; Han, Yu-San; Feunteun, Eric; Sommaruga, Ruben; Jehle, Robert & Schabetsberger, Robert (2020). Stable species boundaries despite ten million years of hybridization in tropical eels. Nature Communications.  ISSN 2041-1723.  11 . doi: 10.1038/s41467-020-15099-x
  • Malinsky, M; Matschiner, Michael & Svardal, Hannes (2020). Dsuite - fast D-statistics and related admixture evidence from VCF files. Molecular Ecology Resources.  ISSN 1755-098X.
  • Matschiner, Michael; Böhne, Astrid; Ronco, Fabrizia & Salzburger, Walter (2020). The genomic timeline of cichlid fish diversification across continents. Nature Communications.  ISSN 2041-1723.
  • Ronco, Fabrizia; Matschiner, Michael; Böhne, Astrid; Boila, Anna; Büscher, Heinz H; El Taher, Athimed; Indermaur, Adrian; Malinsky, Milan; Ricci, Virginie; Kahmen, Ansgar; Jentoft, Sissel & Salzburger, Walter (2020). Drivers and dynamics of a massive adaptive radiation in cichlid fishes. Nature.  ISSN 0028-0836.
  • Roth, Olivia; Solbakken, Monica Hongrø; Tørresen, Ole K.; Bayer, Till; Matschiner, Michael; Baalsrud, Helle Tessand; Hoff, Siv Nam Khang; Brieuc, Marine Servane Ono; Haase, David Jürgen; Hanel, Reinhold; Reusch, Thorsten B. H. & Jentoft, Sissel (2020). Evolution of male pregnancy associated with remodeling of canonical vertebrate immunity in seahorses and pipefishes. Proceedings of the National Academy of Sciences of the United States of America.  ISSN 0027-8424.  117, s 9431- 9439 . doi: 10.1073/pnas.1916251117
  • Bouckaert, Remco; Vaughan, Timothy G; Barrido-Sottani, Joëlle; Duchêne, Sebastián; Fourment, Mathieu; Gavryushkina, Alexandra; Heled, Joseph; Jones, Graham; Kühnert, Denise; De Maio, Nicola; Matschiner, Michael; Mendes, Fábio; Müller, Nicola; Ogilvie, Huw; du Plessis, Louis; Popinga, Alex; Rambaut, Andrew; Rasmussen, David; Siveroni, Igor; Suchard, Marc A.; Wu, Chieh-Hsi; Xie, Dong; Zhang, Chi; Stadler, Tanja & Drummond, Alexei (2019). BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology.  ISSN 1553-734X.  15(4) . doi: 10.1371/journal.pcbi.1006650
  • Ceballos, Santiago; Roesti, Marius; Matschiner, Michael; Fernandez, Daniel A; Damerau, Malte; Hanel, Reinhold & Salzburger, Walter (2019). Phylogenomics of an extra-Antarctic notothenioid radiation reveals a previously unrecognized lineage and diffuse species boundaries. BMC Evolutionary Biology.  ISSN 1471-2148.  19(1), s 1- 14 . doi: 10.1186/s12862-019-1345-z Full text in Research Archive.
  • Fang, Bohao; Merilä, Juha; Matschiner, Michael & Momigliano, Paolo (2019). Estimating uncertainty in divergence times among three-spined stickleback clades using the multispecies coalescent. Molecular Phylogenetics and Evolution.  ISSN 1055-7903.  142, s 1- 5 . doi: 10.1016/j.ympev.2019.106646 Full text in Research Archive.
  • Matschiner, Michael (2019). Gondwanan vicariance or trans-Atlantic dispersal of cichlid fishes: a review of the molecular evidence. Hydrobiologia.  ISSN 0018-8158.  832(1), s 9- 37 . doi: 10.1007/s10750-018-3686-9
  • Matschiner, Michael (2019). Selective Sampling of Species and Fossils Influences Age Estimates Under the Fossilized Birth-Death Model. Frontiers in Genetics.  ISSN 1664-8021.  10 . doi: 10.3389/fgene.2019.01064 Full text in Research Archive.
  • Musilova, Zuzana; Cortesi, Fabio; Matschiner, Michael; Davies, Wayne I. L.; Patel, Jagdish Suresh; Stieb, Sara M.; De Busserolles, Fanny; Malmstrøm, Martin; Tørresen, Ole K.; Brown, Celeste J.; Mountford, Jessica K.; Hanel, Reinhold; Stenkamp, Deborah L.; Jakobsen, Kjetill Sigurd; Carleton, Karen L.; Jentoft, Sissel; Marshall, Justin & Salzburger, Walter (2019). Vision using multiple distinct rod opsins in deep-sea fishes. Science.  ISSN 0036-8075.  364(6440), s 588- 592 . doi: 10.1126/science.aav4632
  • Varadharajan, Srinidhi; Rastas, Pasi; Löytynoja, Ari; Matschiner, Michael; Calboli, Federico C. F.; Guo, Baocheng; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd & Merilä, Juha (2019). A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome. Genome Biology and Evolution.  ISSN 1759-6653.  11(11), s 3291- 3308 . doi: 10.1093/gbe/evz240 Full text in Research Archive.
  • Runemark, Anna; Trier, Cassandra Nicole; Eroukhmanoff, Fabrice; Hermansen, Jo Skeie; Matschiner, Michael; Ravinet, Mark; Elgvin, Tore Oldeide & Sætre, Glenn-Peter (2018). Variation and constraints in hybrid genome formation. Nature Ecology and Evolution.  ISSN 2397-334X.  2(3), s 549- 556 . doi: 10.1038/s41559-017-0437-7
  • Langangen, Øystein; Färber, Leonie Anette; Stige, Leif Christian; Diekert, Florian Klaus; Barth, Julia Maria Isis; Matschiner, Michael; Berg, Paul Ragnar; Star, Bastiaan; Stenseth, Nils Christian; Jentoft, Sissel & Durant, Joel Marcel (2018). Ticket to spawn: Combining economic and genetic data to evaluate the effect of climate and demographic structure on spawning distribution in Atlantic cod. Global Change Biology.  ISSN 1354-1013.  25(1), s 134- 143 . doi: 10.1111/gcb.14474 Full text in Research Archive.
  • Malmstrøm, Martin; Britz, Ralf; Matschiner, Michael; Tørresen, Ole K.; Hadiaty, Renny Kurnia; Yaakob, Norsham; Tan, Heok Hui; Jakobsen, Kjetill Sigurd; Salzburger, Walter & Rüber, Lukas (2018). The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes. Genome Biology and Evolution.  ISSN 1759-6653.  10(4), s 1088- 1103 . doi: 10.1093/gbe/evy058 Full text in Research Archive.
  • Stange, Madlen; Sanchez-Villagra, Marcelo R; Salzburger, Walter & Matschiner, Michael (2018). Bayesian divergence-time estimation with genome-wide single-nucleotide polymorphism data of sea catfishes (Ariidae) supports miocene closure of the Panamanian Isthmus. Systematic Biology.  ISSN 1063-5157.  67(4), s 681- 699 . doi: 10.1093/sysbio/syy006
  • Toljagic, Olja; Voje, Kjetil L.; Matschiner, Michael; Liow, Lee Hsiang & Hansen, Thomas F (2018). Millions of Years Behind: Slow Adaptation of Ruminants to Grasslands. Systematic Biology.  ISSN 1063-5157.  67(1), s 145- 157 . doi: 10.1093/sysbio/syx059
  • Baalsrud, Helle Tessand; Voje, Kjetil L.; Tørresen, Ole Kristian; Solbakken, Monica Hongrø; Matschiner, Michael; Malmstrøm, Martin; Hanel, Reinhold; Salzburger, Walter; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2017). Evolution of Hemoglobin Genes in Codfishes Influenced by Ocean Depth. Scientific Reports.  ISSN 2045-2322.  7, s 1- 10 . doi: doi:10.1038/s41598-017-08286-2 Full text in Research Archive. Show summary
  • Barth, Julia Maria Isis; Damerau, Malte; Matschiner, Michael; Jentoft, Sissel & Hanel, Reinhold (2017). Genomic Differentiation and Demographic Histories of Atlantic and Indo-Pacific Yellowfin Tuna (Thunnus albacares) Populations. Genome Biology and Evolution.  ISSN 1759-6653.  9(4), s 1084- 1098 . doi: 10.1093/gbe/evx067 Full text in Research Archive.
  • Malmstrøm, Martin; Matschiner, Michael; Tørresen, Ole Kristian; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2017). Whole genome sequencing data and de novo draft assemblies for 66 teleost species. Scientific Data.  ISSN 2052-4463.  4, s 1- 13 . doi: 10.1038/sdata.2016.132 Full text in Research Archive.
  • Matschiner, Michael; Musilová, Zuzana; Barth, Julia Maria Isis; Starostová, Zuzana; Salzburger, Walter; Steel, Mike & Bouckaert, Remco (2017). Bayesian phylogenetic estimation of clade ages supports trans-Atlantic dispersal of cichlid fishes. Systematic Biology.  ISSN 1063-5157.  66(1), s 3- 22 . doi: 10.1093/sysbio/syw076 Full text in Research Archive. Show summary
  • Gante, Hugo F; Matschiner, Michael; Malmstrøm, Martin; Jakobsen, Kjetill Sigurd; Jentoft, Sissel & Salzburger, Walter (2016). Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika. Molecular Ecology.  ISSN 0962-1083.  25(24), s 6143- 6161 . doi: 10.1111/mec.13767 Show summary
  • Malmstrøm, Martin; Matschiner, Michael; Tørresen, Ole Kristian; Star, Bastiaan; Snipen, Lars-Gustav; Hansen, Thomas F; Baalsrud, Helle Tessand; Nederbragt, Alexander Johan; Hanel, Reinhold; Salzburger, Walter; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2016). Evolution of the immune system influences speciation rates in teleost fishes. Nature Genetics.  ISSN 1061-4036.  48(10), s 1204- 1210 . doi: 10.1038/ng.3645 Full text in Research Archive.
  • Matschiner, Michael (2016). Fitchi: Haplotype genealogy graphs based on the Fitch algorithm. Bioinformatics.  ISSN 1367-4803.  32(8), s 1250- 1252 . doi: 10.1093/bioinformatics/btv717
  • Meyer, Britta S.; Matschiner, Michael & Salzburger, Walter (2016). Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes. Systematic Biology.  ISSN 1063-5157.  66(4), s 531- 550 . doi: 10.1093/sysbio/syw069 Show summary
  • Colombo, Marco; Damerau, Malte; Hanel, Reinhold; Salzburger, Walter & Matschiner, Michael (2015). Diversity and disparity through time in the adaptive radiation of Antarctic notothenioid fishes. Evolutionary biology.  ISSN 0071-3260.  28, s 376- 394 . doi: 10.1111/jeb.12570
  • Matschiner, Michael; Colombo, Marco; Damerau, Malte; Ceballos, Santiago; Hanel, Reinhold & Salzburger, Walter (2015). The Adaptive Radiation of Notothenioid Fishes in the Waters of Antarctica, In Rüdiger Riesch; Michael Tobler & Martin Plath (ed.),  Extremophile Fishes.  Springer.  ISBN 978-3-319-13362-1.  The Adaptive Radiation of Notothenioid Fishes in the Waters of Antarctica.  s 35 - 57
  • Meyer, Britta S.; Matschiner, Michael & Salzburger, Walter (2015). A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach. Molecular Phylogenetics and Evolution.  ISSN 1055-7903.  83, s 56- 71 . doi: 10.1016/j.ympev.2014.10.009

View all works in Cristin

  • Matschiner, Michael (2019). Accuracy and precision of phylogenomic divergence-time estimates.
  • Matschiner, Michael & Salzburger, Walter (2019). Evolution: Genomic Signatures of Mimicry and Mimicry of Genomic Signatures. Current Biology.  ISSN 0960-9822.  29, s R363- R365 . doi: 10.1016/j.cub.2019.04.015
  • Reinar, William Brynildsen; Tørresen, Ole K.; Matschiner, Michael; Jentoft, Sissel; Nederbragt, Alexander Johan & Jakobsen, Kjetill Sigurd (2018). The impact of repetitive DNA on speciation rates in teleost fish.
  • Barth, Julia Maria Isis; Star, Bastiaan; Matschiner, Michael; André, Carl; Knutsen, Halvor; Bradbury, Ian; Dierking, Jan; Petereit, Christoph; Righton, David; Metcalfe, Julian; Jakobsen, Kjetill Sigurd; Olsen, Esben Moland & Jentoft, Sissel (2017). Chromosomal rearrangements as barriers to homogenization in highly mobile fish.
  • Barth, Julia Maria Isis; Star, Bastiaan; Matschiner, Michael; André, Carl; Knutsen, Halvor; Bradbury, Ian; Dierking, Jan; Petereit, Christoph; Righton, David; Metcalfe, Julian; Jakobsen, Kjetill Sigurd; Olsen, Esben Moland & Jentoft, Sissel (2017). Chromosomal rearrangements as barriers to homogenization in highly mobile fish.
  • Matschiner, Michael (2017). Phylogenetic dating of cichlid radiations.
  • Matschiner, Michael; Star, Bastiaan; Barth, Julia Maria Isis; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2017). Genomic rearrangements a phylogenetic approach.
  • Barth, Julia Maria Isis; Star, Bastiaan; Matschiner, Michael; Berg, Paul Ragnar; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2016). Ancient genomic variation separates Atlantic cod ecotypes; implications for management.
  • Matschiner, Michael (2015). Inversions or Introgression: The origin of high-divergence genomic regions in Atlantic cod.
  • Star, Bastiaan; Jentoft, Sissel; Matschiner, Michael; Nederbragt, Alexander Johan; Kjesbu, Olav Sigurd; Berg, Paul Ragnar; Bradbury, Ian R.; Pampoulie, Christophe; Hansen, Marianne Helén Selander; Skage, Morten; Jakobsen, Kjetill Sigurd & Stenseth, Nils Christian (2015). Does historic DNA provide genomic evidence for recent selection in Atlantic cod?.
  • Matschiner, Michael; Star, Bastiaan; Berg, Paul Ragnar; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Hansen, Marianne Helén Selander; Skage, Morten; Kjesbu, Olav Sigurd; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2014). Population differentiation and local adaptation in Atlantic cod.

View all works in Cristin

Published Oct. 3, 2013 3:45 PM - Last modified Nov. 7, 2019 10:43 PM