Lex Nederbragt

Image of Lex Nederbragt
Norwegian version of this page
Phone +47 22844132
Username
Visiting address Blindernveien 31 0371 Oslo
Postal address Postboks 1066 Blindern 0316 Oslo

Background

I am a Senior Lecturer ('Førstelektor') at the Department of Biosciences, University of Oslo. I am also head of education and training for the Centre for Bioinformatics, Dept. of Informatics, Univ. of Oslo.

At the Dept. of Biosciences, I lead the implementation of Computing in Science Education in the bachelor degree. As part of that I organise the first-semester course "Introduction to Computational Modelling for the Biosciences" (BIOS1100), teaching new Bioscience students mathematical modeling of biological problems using Python.

For the Centre for Bioinformatics, I develop and coordinate a portfolio of credited courses as well as workshops for master and PhD students and other staff.

I am a self-taught bioinformatician with a firm background in biology. My research at the Centre for Ecological and Evolutionary Synthesis (CEES) at the Dept. of Biosciences is on new methods to represent (reference) genomic information. I previously had a central role in the sequencing and assembly of the Atlantic cod genome. I lead the Advisory Council for eInfrastructure (fagrådet for eInfrastruktur) at UiO.

I am a Software Carpentry instructor, teaching computational lab skills to scientists at UiO and in the Nordic countries. I am an advocate of open source software, and reproducible computational biology. I share my work not only through publications, but also on my science blog. My presentations can be found on figshare and slideshare, and I am active on twitter (@lexnederbragt).

I have an analytical mind that loves problem solving. I value honesty and professionalism, and dislike hype. I believe that sharing and openness will further science more than competition. I choose impact over impact factor.
 

Teaching

BIOS1100 "Innføring i beregningsmodeller for biovitenskap" course responsible (emneansvarlig) 2017-

INF-BIO5121 and INF-BIO9121 "High Throughput Sequencing technologies and bioinformatics analysis", course responsible (emneansvarlig) 2012-2016

 

 

Tags: Atlantic cod, Ecological genomics, Genomics, Programming, Bioinformatics, Biology, Comparative genomics, DNA sequence analysis, DNA sequencing, Evolution, Evolutionary biology, Evolutionary genomics, Fish, Genes, Genetics, Genome, High-throughput sequencing, Life Science, Software Carpentry, Open Science

Publications

  • Khelik, Ksenia; Sandve, Geir Kjetil; Nederbragt, Alexander Johan & Rognes, Torbjørn (2020). NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads. BMC Bioinformatics. ISSN 1471-2105. 21(1). doi: 10.1186/s12859-020-3414-0. Full text in Research Archive
  • Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan & Sandve, Geir Kjetil (2020). Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods. BMC Genomics. ISSN 1471-2164. 21. doi: 10.1186/s12864-020-6685-y. Full text in Research Archive
  • Varadharajan, Srinidhi; Rastas, Pasi; Löytynoja, Ari; Matschiner, Michael; Calboli, Federico C. F. & Guo, Baocheng [Show all 9 contributors for this article] (2019). A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome . Genome Biology and Evolution (GBE). ISSN 1759-6653. 11(11), p. 3291–3308. doi: 10.1093/gbe/evz240. Full text in Research Archive
  • Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2019). Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. PLoS Computational Biology. ISSN 1553-734X. 15(2), p. 1–13. doi: 10.1371/journal.pcbi.1006731. Full text in Research Archive
  • Tørresen, Ole K.; Brieuc, Marine Servane; Solbakken, Monica Hongrø; Sørhus, Elin; Nederbragt, Alexander Johan & Jakobsen, Kjetill Sigurd [Show all 9 contributors for this article] (2018). Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats. BMC Genomics. ISSN 1471-2164. 19(240), p. 1–17. doi: 10.1186/s12864-018-4616-y. Full text in Research Archive
  • Varadharajan, Srinidhi; Sandve, Simen Rød; Gillard, Gareth Benjamin; Tørresen, Ole K.; Mulugeta, Teshome Dagne & Hvidsten, Torgeir Rhoden [Show all 11 contributors for this article] (2018). The grayling genome reveals selection on gene expression regulation after whole-genome duplication. Genome Biology and Evolution (GBE). ISSN 1759-6653. 10(10), p. 2785–2800. doi: 10.1093/gbe/evy201. Full text in Research Archive
  • Jørgensen, Tor Erik; Karlsen, Bård Ove; Emblem, Åse; Breines, Ragna; Andreassen, morten & Rounge, Trine Ballestad [Show all 15 contributors for this article] (2018). Mitochondrial genome variation of Atlantic cod. BMC Research Notes. ISSN 1756-0500. 11:397, p. 1–7. doi: 10.1186/s13104-018-3506-3. Full text in Research Archive
  • Lie, Kai Kristoffer; Tørresen, Ole K.; Solbakken, Monica Hongrø; Rønnestad, Ivar; Tooming-Klunderud, Ave & Nederbragt, Alexander Johan [Show all 8 contributors for this article] (2018). Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics. ISSN 1471-2164. 19(186), p. 1–17. doi: 10.1186/s12864-018-4570-8. Full text in Research Archive
  • Elgvin, Tore Oldeide; Trier, Cassandra Nicole; Tørresen, Ole Kristian; Hagen, Ingerid; Lien, Sigbjørn & Nederbragt, Alexander Johan [Show all 9 contributors for this article] (2017). The genomic mosaicism of hybrid speciation. Science Advances. ISSN 2375-2548. 3, p. 1–16. doi: 10.1126/sciadv.1602996. Full text in Research Archive
  • Wilson, Greg; Brian, Jennifer; Cranston, Karen; Kitzes, Justin; Nederbragt, Alexander Johan & Teal, Tracy K (2017). Good enough practices in scientific computing. PLoS Computational Biology. ISSN 1553-734X. 13(6). doi: 10.1371/journal.pcbi.1005510. Full text in Research Archive
  • Rand, Knut Dagestad; Grytten, Ivar; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2017). Coordinates and intervals in graph-based reference genomes. BMC Bioinformatics. ISSN 1471-2105. 18:263, p. 1–8. doi: 10.1186/s12859-017-1678-9. Full text in Research Archive
  • Khelik, Ksenia; Lagesen, Karin; Sandve, Geir Kjetil; Rognes, Torbjørn & Nederbragt, Alexander Johan (2017). NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. BMC Bioinformatics. ISSN 1471-2105. 18(1), p. 1–14. doi: 10.1186/s12859-017-1748-z. Full text in Research Archive
  • Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Reinar, William Brynildsen; Grove, Harald & Miller, Jason R. [Show all 16 contributors for this article] (2017). An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics. ISSN 1471-2164. 18, p. 1–23. doi: 10.1186/s12864-016-3448-x. Full text in Research Archive
  • Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman & Holden, Lars [Show all 25 contributors for this article] (2017). GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience. ISSN 2047-217X. 6(7), p. 1–12. doi: 10.1093/gigascience/gix032. Full text in Research Archive
  • Malmstrøm, Martin; Matschiner, Michael; Tørresen, Ole Kristian; Star, Bastiaan; Snipen, Lars-Gustav & Hansen, Thomas F [Show all 13 contributors for this article] (2016). Evolution of the immune system influences speciation rates in teleost fishes. Nature Genetics. ISSN 1061-4036. 48(10), p. 1204–1210. doi: 10.1038/ng.3645. Full text in Research Archive
  • Star, Bastiaan; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd; Pampoulie, Christophe & Jentoft, Sissel (2016). Genomic characterization of the Atlantic cod sex-locus. Scientific Reports. ISSN 2045-2322. 6, p. 1–9. doi: 10.1038/srep31235. Full text in Research Archive
  • Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter & Nome, Torfinn [Show all 45 contributors for this article] (2016). The Atlantic salmon genome provides insights into rediploidization. Nature. ISSN 0028-0836. 533(7602), p. 200–205. doi: 10.1038/nature17164. Full text in Research Archive
  • Frank, Jeremy A.; Pan, Yao; Tooming-Klunderud, Ave; Eijsink, Vincent; McHardy, Alice C & Nederbragt, Alexander Johan [Show all 7 contributors for this article] (2016). Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports. ISSN 2045-2322. 6. doi: 10.1038/srep25373. Full text in Research Archive
  • Solbakken, Monica Hongrø; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Seppola, Marit; Gregers, Tone Fredsvik & Jakobsen, Kjetill Sigurd [Show all 7 contributors for this article] (2016). Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions. Scientific Reports. ISSN 2045-2322. 6. doi: 10.1038/srep25211. Full text in Research Archive
  • Tørresen, Ole Kristian; Rise, Matthew L.; Jin, Xingkun; Star, Bastiaan; MacKenzie, Simon & Jakobsen, Kjetill Sigurd [Show all 8 contributors for this article] (2016). An improved version of the Atlantic cod genome and advancements in functional genomics: implications for the future of cod farming. In MacKenzie, Simon & Jentoft, Sissel (Ed.), Genomics in Aquaculture. Elsevier. ISSN 9780128014189. p. 45–72. doi: 10.1016/B978-0-12-801418-9.00003-2.
  • Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2016). The new era of genome sequencing using high-throughput sequencing technology: Generation of the first version of the Atlantic cod genome. In MacKenzie, Simon & Jentoft, Sissel (Ed.), Genomics in Aquaculture. Elsevier. ISSN 9780128014189. p. 1–20. doi: 10.1016/B978-0-12-801418-9.00001-9.
  • Crusoe, Michael R.; Alameldin, Hussien F.; Awad, Sherine; Boucher, Elmar; Caldwell, Adam & Cartwright, Reed [Show all 61 contributors for this article] (2015). The khmer software package: enabling efficient nucleotide sequence analysis. F1000 Research. ISSN 2046-1402. p. 1–12. doi: 10.12688/f1000research.6924.1.
  • Hermansen, Jo Skeie; Haas, Fredrik; Trier, Cassandra Nicole; Bailey, Richard Ian; Nederbragt, Alexander Johan & Marzal, Alfonso [Show all 7 contributors for this article] (2014). Hybrid speciation through sorting of parental incompatibilities in Italian sparrows. Molecular Ecology. ISSN 0962-1083. 23(23), p. 5831–5842. doi: 10.1111/mec.12910.
  • Brembu, Tore; Winge, Per; Tooming-Klunderud, Ave ; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd & Bones, Atle M. (2014). The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer. Marine Genomics. ISSN 1874-7787. 16(1), p. 17–27. doi: 10.1016/j.margen.2013.12.002.
  • Star, Bastiaan; Nederbragt, Alexander Johan; Hansen, Marianne Helén Selander; Skage, Morten; Gilfillan, Gregor Duncan & Bradbury, Ian R. [Show all 10 contributors for this article] (2014). Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA. PLOS ONE. ISSN 1932-6203. 9(3). doi: 10.1371/journal.pone.0089676. Full text in Research Archive
  • Siddiqui, Huma; Lagesen, Karin; Nederbragt, Alexander Johan; Eri, Lars Magne; Jeansson, Stig & Jakobsen, Kjetill Sigurd (2014). Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-Independent High Throughput Sequencing: A Case Report. Open Microbiology Journal. ISSN 1874-2858. 8, p. 148–153. doi: 10.2174/1874285801408010148.
  • Tooming-Klunderud, Ave ; Sogge, Hanne; Rounge, Trine Ballestad; Nederbragt, Alexander Johan; Lagesen, Karin & Glöckner, Gernot [Show all 9 contributors for this article] (2013). From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between Planktothrix Strains. Applied and Environmental Microbiology. ISSN 0099-2240. 79(21), p. 6803–6812. doi: 10.1128/AEM.01455-13. Full text in Research Archive
  • Logares, Ramiro; Haverkamp, Thomas Hendricus Augustus; Kumar, Surendra; Lanzén, Anders; Nederbragt, Alexander Johan & Quince, Christopher [Show all 7 contributors for this article] (2012). Environmental microbiology through the lens of high-throughput DNA sequencing: Synopsis of current platforms and bioinformatics approaches. Journal of Microbiological Methods. ISSN 0167-7012. 91(1), p. 106–113. doi: 10.1016/j.mimet.2012.07.017.
  • Siddiqui, Huma; Lagesen, Karin; Nederbragt, Alexander Johan; Jeansson, Stig & Jakobsen, Kjetill Sigurd (2012). Alterations of microbiota in urine from women with interstitial cystitis. BMC Microbiology. ISSN 1471-2180. 12(205). doi: 10.1186/1471-2180-12-205. Full text in Research Archive
  • Espelund, Mari; Minge, Marianne Aastebøl; Gabrielsen, Tove M; Nederbragt, Alexander Johan; Shalchian-Tabrizi, Kamran & Otis, Christian [Show all 9 contributors for this article] (2012). Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates. PLOS ONE. ISSN 1932-6203. 7(6). doi: 10.1371/journal.pone.0038809. Full text in Research Archive
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin & Gregers, Tone Fredsvik [Show all 42 contributors for this article] (2011). The genome sequence of Atlantic cod reveals a unique immune system. Nature. ISSN 0028-0836. 477(7363), p. 207–210. doi: 10.1038/nature10342. Full text in Research Archive
  • Brede, Dag Anders; Snipen, Lars-Gustav; Ussery, David Wayne; Nederbragt, Alexander Johan & Nes, Ingolf (2011). Complete Genome Sequence of the Commensal Enterococcus faecalis 62, Isolated from a Healthy Norwegian Infant. Journal of Bacteriology. ISSN 0021-9193. 193(9), p. 2377–2378. doi: 10.1128/JB.00183-11.
  • Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave ; Patil, Viswanath & Nederbragt, Alexander Johan [Show all 11 contributors for this article] (2011). Genome Evolution of a Tertiary Dinoflagellate Plastid. PLOS ONE. ISSN 1932-6203. 6(4). doi: 10.1371/journal.pone.0019132.
  • Siddiqui, Huma; Nederbragt, Alexander Johan; Lagesen, Karin; Jeansson, Stig & Jakobsen, Kjetill Sigurd (2011). Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons. BMC Microbiology. ISSN 1471-2180. 11. doi: 10.1186/1471-2180-11-244.

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  • Nederbragt, Alexander Johan; Harris, Rayna Michelle; Hill, Alison Presmanes & Wilson, Greg (2020). Ten quick tips for teaching with participatory live coding. PLoS Computational Biology. ISSN 1553-734X. 16(9), p. 1–7. doi: 10.1371/journal.pcbi.1008090. Full text in Research Archive
  • Nederbragt, Alexander Johan (2019). Learning from the Carpentries.
  • Fyhn, Marianne; Malthe-Sørenssen, Anders; Mørken, Knut Martin; Nederbragt, Alexander Johan; Odden, Tor Ole & Sundnes, Joakim (2019). Beregningsorientering og utdanningsutvikling.
  • Reinar, William Brynildsen; Tørresen, Ole K.; Matschiner, Michael; Jentoft, Sissel; Nederbragt, Alexander Johan & Jakobsen, Kjetill Sigurd (2018). The impact of repetitive DNA on speciation rates in teleost fish.
  • Nederbragt, Alexander Johan (2018). Programmering og modellering i biovitenskapsutdanning.
  • Tennøe, Simen; Mobarhan, Milad; Dragly, Svenn-Arne; Solbrå, Andreas Våvang & Nederbragt, Alexander Johan (2017). Teaching modelling to first-year biology students.
  • Nederbragt, Alexander Johan (2017). How I got infected by fish genomics - and how you can too.
  • Nederbragt, Alexander Johan (2017). Teaching Researchers Basic Skills for Computational Research: the Software Carpentry Model.
  • Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Lien, Sigbjørn; Rori, Rohlfs; Jakobsen, Kjetill Sigurd & Nome, Torfinn [Show all 9 contributors for this article] (2017). Evolution after whole genome duplication - insights from the salmonids.
  • Nederbragt, Alexander Johan & Lagesen, Karin (2016). The Carpentry effort at the University of Oslo.
  • Nederbragt, Alexander Johan (2016). SMRTwishes for SMRTsoftware for SMRTreads - a user’s perspective.
  • Nederbragt, Alexander Johan (2016). The new Atlantic cod reference genome.
  • Nederbragt, Alexander Johan (2016). Doing bioinformatics: a user’s perspective.
  • Nederbragt, Alexander Johan (2016). In between lines of code - a blog about biology, sequencing, bioinformatics and more.
  • Eide, Marta; Puntervoll, Pål; Lille-Langøy, Roger; Goldstone, Jared V.; Tørresen, Ole Kristian & Nederbragt, Alexander Johan [Show all 11 contributors for this article] (2016). Chemical warfare in the marine environment: genomic survey of the Atlantic cod (Gadus morhua) defensome reveals the absence of an important xenosensor.
  • Nederbragt, Alexander Johan (2015). A New, High Quality Reference Genome Assembly For Atlantic Cod.
  • Nederbragt, Alexander Johan (2015). Bioinformatics breakout : Recent experiences from Oslo.
  • Nederbragt, Alexander Johan (2015). Active learning strategies for bioinformatics teaching.
  • Nederbragt, Alexander Johan (2015). Local, central or cloud Why we chose to build our e-infrastructure for sequence analysis embedded in the university of Oslo HPC cluster.
  • Nederbragt, Alexander Johan (2015). In between lines of code - a blog about biology, sequencing, bioinformatics and more.
  • Star, Bastiaan; Jentoft, Sissel; Matschiner, Michael; Nederbragt, Alexander Johan; Kjesbu, Olav Sigurd & Berg, Paul Ragnar [Show all 12 contributors for this article] (2015). Does historic DNA provide genomic evidence for recent selection in Atlantic cod?
  • Nederbragt, Alexander Johan (2014). The why and how of long reads for de novo genome assembly.
  • Nederbragt, Alexander Johan (2014). Mix and match: using multiple sequencing technologies and assemblers for the new Atlantic cod genome.
  • Nederbragt, Alexander Johan (2014). The why and how of long reads for de novo genome assembly.
  • Tørresen, Ole Kristian; Walenz, Brian; Grove, Harald; Lien, Sigbjørn; Knight, James & Star, Bastiaan [Show all 15 contributors for this article] (2014). A new, high quality reference genome assembly for Atlantic cod.
  • Matschiner, Michael; Star, Bastiaan; Berg, Paul Ragnar; Tørresen, Ole Kristian; Nederbragt, Alexander Johan & Hansen, Marianne Helén Selander [Show all 11 contributors for this article] (2014). Population differentiation and local adaptation in Atlantic cod.
  • Nederbragt, Alexander Johan (2014). Assembly – before and after.
  • Brynildsen, William; Tørresen, Ole Kristian; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2014). Genomic sequence repeats in fish genomes.
  • Tørresen, Ole Kristian; Jentoft, Sissel; Star, Bastiaan; Sandve, Geir Kjetil F.; Skage, Morten & Hansen, Marianne Helén Selander [Show all 9 contributors for this article] (2014). A new, high quality reference genome assembly for Atlantic cod.
  • Nederbragt, Alexander Johan; Walenz, Brian; Tørresen, Ole Kristian; Jentoft, Sissel; Jakobsen, Kjetill Sigurd & Miller, Jason Rafe (2014). Towards correction-free assembly of raw PacBio reads.
  • Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Miller, Jason Rafe; Walenz, Brian; Jentoft, Sissel & Jakobsen, Kjetill Sigurd (2013). Improving the Atlantic cod genome using long-read PacBio in combination with 454 and Illumina sequencing data.
  • Nederbragt, Alexander Johan (2013). The IPython Notebook: an introduction, and hands-on/live demo.
  • Loman, N.; Hadfield, James & Nederbragt, Alexander Johan (2013). Seqbench: Open-source benchmarking of sequence platforms and software.
  • Nederbragt, Alexander Johan (2013). The IPython Notebook: an introduction, and hands-on/live demo.
  • Nederbragt, Alexander Johan (2013). Repeat after me: Is our research reproducible (enough)?
  • Nederbragt, Alexander Johan (2013). High Throughput Sequencing technologies.
  • Nederbragt, Alexander Johan (2013). Lessons learned from assembling the Atlantic cod genome.
  • Nederbragt, Alexander Johan (2013). Using PacBio Reads to Improve and Validate the Assembly of the Complex Atlantic Cod Genome.
  • Nederbragt, Alexander Johan (2013). High Throughput Sequencing technologies at the Norwegian Sequencing Centre with a focus on genome assembly.
  • Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Lagesen, Karin; Khelik, Ksenia; Rognes, Torbjørn & Jentoft, Sissel [Show all 7 contributors for this article] (2012). Improving the cod genome with the use of multi-platform sequencing data.
  • Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Khelik, Ksenia; Lagesen, Karin; Rounge, Trine Ballestad & Star, Bastiaan [Show all 13 contributors for this article] (2012). Challenges and Opportunities for Improving the Atlantic Cod Genome Assembly and Annotation.
  • Nederbragt, Alexander Johan (2012). The best of both worlds - Combining PacBio with short read technology for improved de novo genome assembly.
  • Nederbragt, Alexander Johan (2012). Experiences with Combining PacBio with Short Read Technology for Improved de novo Assembly of Complex Genomes.
  • Nederbragt, Alexander Johan (2012). New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond.
  • Nederbragt, Alexander Johan (2012). Experiences with Combining PacBio with Short Read Technology for Improved de novo Assembly of Complex Genomes.
  • Nederbragt, Alexander Johan (2012). High-throughput sequencing og behovet for tungregneressurser.
  • Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Skage, Morten; Tooming-Klunderud, Ave ; Hansen, Marianne Helén Selander & Jentoft, Sissel [Show all 9 contributors for this article] (2012). The long jump: Long distance mate pairs and long PacBio reads for the Salmon Genome Project.
  • Nederbragt, Alexander Johan (2012). The bioinformatics of sequencing and assembling genomes - with a focus on the Atlantic cod and salmon genome projects.
  • Nederbragt, Alexander Johan (2012). How and why I use blogging and twitter for science.
  • Nederbragt, Alexander Johan (2012). New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond.
  • Brembu, Tore; Winge, Per; Sparstad, Torfinn; Klunderud, Ave Tooming; Nederbragt, Alexander Johan & Jakobsen, Kjetill Sigurd [Show all 7 contributors for this article] (2011). The Seminavis robusta genome project.
  • Brembu, Tore; Winge, Per; Sparstad, Torfinn; Klunderud, Ave Tooming; Nederbragt, Alexander Johan & Jakobsen, Kjetill Sigurd [Show all 7 contributors for this article] (2011). Genomprosjektet på kiselalgen Seminavis robusta.
  • Løvoll, Marie Therese; Wiik-Nielsen, Jannicke; Grove, Søren; Wiik-Nielsen, Christer R.; Kristoffersen, Anja Bråthen & Jung, J. [Show all 11 contributors for this article] (2011). Totivirus og reovirus i laks med kardiomyopatisyndrom (CMS).
  • Nederbragt, Alexander Johan (2011). How to sequence a large eukaryotic genome and how we sequenced the cod genom.
  • Nederbragt, Alexander Johan (2011). Next generation sequencing: research opportunities and bioinformatic challenges.
  • Rounge, Trine Ballestad & Nederbragt, Alexander Johan (2011). The Atlantic Cod Genome Project.
  • Nederbragt, Alexander Johan; Lagesen, Karin & Malmstrøm, Martin (2011). Bioinformatic analysis of genomic data.
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin & Gregers, Tone Fredsvik [Show all 18 contributors for this article] (2011). The genome of Atlantic cod reveals a unique immune system.

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Published May 26, 2011 9:54 PM - Last modified June 22, 2018 3:32 PM