Ernesto Jimenez-Ruiz

Image of Ernesto Jimenez-Ruiz
Norwegian version of this page
Email ernestoj@ifi.uio.no
Room 8165
Username
Visiting address Ole Johan Dahls hus Gaustadalleen 23 B 0373 OSLO
Postal address Postboks 1080 Blindern 0316 OSLO

Project Supervision

I'm happy to (co)supervise internal or external MSc and PhD students in Semantic Web related topics. Please send me an email if you wish to discuss a research topic with me.

Academic interests

My research has covered several areas, including bio-medical information processing and integration, ontology reuse, ontology versioning and evolution, ontology alignment, and text mining. I have also designed novel algorithmic techniques and developed java-based tools to serve as a proof of concept of the conducted theoretical research. My current research interest focuses on the application of Semantic Web technologies to Data Analytics.

Teaching

Short bio

Since April 2018 I am also a Senior Research Associate at The Alan Turing Institute in London (UK) working in the Artificial Intelligence for Data Analytics (AIDA) project. I will be physically working in UK from July 2018.

In September 2016 I moved to Oslo to work as a researcher in the Centre for Scalable Data Access (SIRIUS) and the Logic and Intelligent Data (LogID) group led by Prof. Arild Waaler and Prof. Martin Giese, respectively.

In May 2015 Alessandro Solimando, a PhD student from the University of Genoa I was co-supervising together with Prof. Giovana Guerrini, defended his thesis on "Change Management in the Traditional and Semantic Web"

In January 2011, I joined the Information Systems group (University of Oxford, UK) led by Prof. Georg Gottlob and Prof. Ian Horrocks as a Research Assistant to work in the EPSRC project LogMap. Later in 2012 I worked as a researcher in the FP7 IP project Optique.

I got the doctor degree with honors in Computer Science from the University Jaume I of Castellon (Spain) under the supervision of Dr. Rafael Berlanga Llavori (University Jaume I) and Dr. Bernardo Cuenca Grau (University of Oxford). The Jaume I University awarded a Premio extraordinario de doctorado (roughly translated as a Extraordinary Doctoral Award) to my doctoral thesis (Engineering category 2010-2011). During my PhD I visited several leading institutions in the UK, including the Text Mining Group at the European Bio-informatics Institute in Cambridge; the Information Management Group at University of Manchester; and the Oxford University Computing Laboratory (now Department of Computer Science).

Tags: semantic web, semantic technologies, ontologies, ontology alignment

Publications

My complete list of publications can be found here. The PDF of most of the articles are available online.

  • Agibetov, Asan; Jimenez-Ruiz, Ernesto; Ondrésik, Marta; Solimando, Alessandro; Banerjee, Imon; Guerrini, Giovanna; Catalano, Chiara E; Oliveira, Joaquim M.; Patanè, Giuseppe; Reis, Rui L. & Spagnuolo, Michela (2018). Supporting Shared Hypothesis Testing in the Biomedical Domain. Journal of Biomedical Semantics.  ISSN 2041-1480. . doi: 10.1186/s13326-018-0177-x
  • Pinkel, Christoph; Binning, Carsten; Jimenez-Ruiz, Ernesto; Kharlamov, Evgeny; May, Wolfgang; Nikolov, Andriy; Bastinos, Ana Sasa; Skjæveland, Martin G; Solimando, Alessandro; Taheriyan, Mohsen; Heupel, Christian & Horrocks, Ian (2018). RODI: Benchmarking Relational-to-Ontology Mapping Generation Quality. Semantic Web Journal.  ISSN 1570-0844.  9(1)
  • Achichi, Manel; Cheatham, Michelle; Dragisic, Zlatan; Euzenat, Jerome; Faria, Daniel; Ferrara, Alfio; Flouris, Giorgos; Fundulaki, Irini; Harrow, Ian; Ivanova, Valentina; Jimenez-Ruiz, Ernesto; Kuss, Elena; Lambrix, Patrick; Leopold, Henrik; Li, Huanyu; Meilicke, Christian; Montanelli, Stefano; Pesquita, Catia; Saveta, Tzanina; Shvaiko, Pavel; Splendiani, Andrea; Stuckenschmidt, Heiner; Todorov, Konstantin; Trojahn, Cassia & Zamazal, Ondrej (2017). Results of the ontology alignment evaluation initiative 2016. CEUR Workshop Proceedings.  ISSN 1613-0073.  1766, s 73- 129
  • Harrow, Ian; Jimenez-Ruiz, Ernesto; Splendiani, Andrea; Romacker, Martin; Woollard, Peter; Markel, Scott; Alam-Faruque, Yasmin; Koch, Martin; Malone, James & Waaler, Arild Torolv Søetorp (2017). Matching disease and phenotype ontologies in the ontology alignment evaluation initiative. Journal of Biomedical Semantics.  ISSN 2041-1480.  8(1), s 1- 13 . doi: 10.1186/s13326-017-0162-9 Full text in Research Archive.
  • Jimenez-Ruiz, Ernesto; Carapella, Valentina; Lukaschuk, Elena; Aung, Nay; Fung, Kenneth; Paiva, Jose; Sanghvi, Mihir; Neubauer, Stefan; Petersen, Steffen; Horrocks, Ian & Piechnik, Stefan (2017). Towards the creation of the cardiovascular magnetic resonance quality assessment ontology (CMR-QA). CEUR Workshop Proceedings.  ISSN 1613-0073.  1795
  • Jimenez-Ruiz, Ernesto; Grau, B Cuenca & Cross, V (2017). LogMap family participation in the OAEI 2017. CEUR Workshop Proceedings.  ISSN 1613-0073.  2032, s 153- 157
  • Kharlamov, Evgeny; Hovland, Dag; Skjæveland, Martin G; Bilidas, Dimitris; Jimenez-Ruiz, Ernesto; Xiao, Guohui; Soylu, Ahmet; Lanti, Davide; Rezk, Martin; Zheleznyakov, Dmitriy; Giese, Martin; Lie, Hallstein; Ioannidis, Yannis; Kotidis, Yannis; Koubarakis, Manolis & Waaler, Arild Torolv Søetorp (2017). Ontology Based Data Access in Statoil. Journal of Web Semantics.  ISSN 1570-8268.  44, s 3- 36 . doi: 10.1016/j.websem.2017.05.005 Full text in Research Archive.
  • Kudama, Shahad; Berlanga, Rafael & Jimenez-Ruiz, Ernesto (2017). Enriching the Human Phenotype Ontology with inferred axioms from textual descriptions. CEUR Workshop Proceedings.  ISSN 1613-0073.  2042, s 1- 5
  • Solimando, Alessandro; Jimenez-Ruiz, Ernesto & Guerrini, Giovanna (2017). Minimizing Conservativity Violations in Ontology Alignments: Algorithms and Evaluation. Knowledge and Information Systems.  ISSN 0219-1377.  51(3) . doi: 10.1007/s10115-016-0983-3
  • Soylu, Ahmet; Giese, Martin; Schlatte, Rudolf; Jimenez-Ruiz, Ernesto; Kharlamov, Evgeny; Özçep, Özgür; Neuenstadt, Christian & Brandt, Sebastian (2017). Querying industrial stream-temporal data: An ontology-based visual approach. Journal of Ambient Intelligence and Smart Environments.  ISSN 1876-1364.  9(1), s 77- 95 . doi: 10.3233/AIS-160415 Full text in Research Archive.
  • Soylu, Ahmet; Kharlamov, Evgeny; Zheleznyakov, Dmitriy; Jimenez-Ruiz, Ernesto; Giese, Martin; Skjæveland, Martin G; Hovland, Dag; Schlatte, Rudolf; Brandt, Sebastian; Lie, Hallstein & Horrocks, Ian (2017). OptiqueVQS: a Visual Query System over Ontologies for Industry. Semantic Web Journal.  ISSN 1570-0844.  s 1- 28 Full text in Research Archive.
  • Achichi, Manel; Cheatham, Michelle; Dragisic, Zlatan; Euzenat, Jerome; Faria, Daniel; Ferrara, Alfio; Flouris, Giorgos; Fundulaki, Irini; Harrow, Ian; Ivanova, Valentina; Jimenez-Ruiz, Ernesto; Kuss, Elena; Lambrix, Patrick; Leopold, Henrik; Li, Huanyu; Meilicke, Christian; Montanelli, Stefano; Pesquita, Catia; Saveta, Tzanina; Shvaiko, Pavel; Splendiani, Andrea; Stuckenschmidt, Heiner; Todorov, Konstantin; Trojahn, Cassia & Zamazal, Ondrej (2016). Results of the Ontology Alignment Evaluation Initiative 2016. CEUR Workshop Proceedings.  ISSN 1613-0073.  1766, s 73- 129
  • Jimenez-Ruiz, Ernesto; Cuenca Grau, Bernardo Cuenca & Cross, Valerie V. (2016). LogMap family participation in the OAEI 2016. CEUR Workshop Proceedings.  ISSN 1613-0073.  1766, s 185- 189
  • Kharlamov, Evgeny; Brandt, Sebastian; Giese, Martin; Jimenez-Ruiz, Ernesto; Kotidis, Yannis; Lamparter, Steffen; Mailis, Theofilis P.; Neuenstadt, Christian; Özcep, Özgür; Pinkel, Christoph; Soylu, Ahmet; Svingos, Christoforos; Zheleznyakov, Dmitriy; Horrocks, Ian; Ioannidis, Yannis; Möller, Ralf & Waaler, Arild (2016). Enabling semantic access to static and streaming distributed data with optique: demo, In Avigdor Gal; Matthias Weidlich; Vana Kalogeraki & Nalini Venkasubramanian (ed.),  Proceedings of the 10th ACM International Conference on Distributed and Event-based Systems, DEBS '16, Irvine, CA,USA, June 20 -24.  ACM Publications.  ISBN 978-1-4503-4021-2.  Chapter.  s 350 - 353
  • Kharlamov, Evgeny; Mailis, Theofilis P.; Bereta, Konstantina; Bilidas, Dimitris; Brandt, Sebastian; Jimenez-Ruiz, Ernesto; Lamparter, Steffen; Neuenstadt, Christian; Özcep, Özgür; Soylu, Ahmet; Svingos, Christoforos; Xiao, Guohui; Zheleznyakov, Dmitriy; Calvanese, Diego; Horrocks, Ian; Giese, Martin; Ioannidis, Yannis; Kotidis, Yannis; Möller, Ralf & Waaler, Arild (2016). A Semantic Approach to Polystores, In James Joshi (ed.),  Proceedings 2016 IEEE International Conference on Big Data.  IEEE.  ISBN 978-1-4673-9005-7.  KAPITTEL.  s 2565 - 2573
  • Soylu, Ahmet; Giese, Martin; Jimenez-Ruiz, Ernesto; Kharlamov, Evgeny; Schlatte, Rudolf; Neuenstadt, Christian; Ozcep, Ozgur; Lie, Hallstein; Klungre, Vidar Norstein; Brandt, Sebastian & Horrocks, Ian (2016). Ontology-based visual querying with OptiqueVQS: Statoil and Siemens cases. CEUR Workshop Proceedings.  ISSN 1613-0073.  1818, s 34- 39

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  • Dragoni, Mauro; Poveda-Villalon, Maria & Jimenez-Ruiz, Ernesto (ed.) (2017). OWL: Experiences and Directions - Reasoner Evaluation. Springer.  ISBN 978-3-319-54626-1.  153 s.

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  • Dragoni, Mauro; Poveda-Villalon, Maria & Jimenez-Ruiz, Ernesto (2017). Preface. Lecture Notes in Computer Science.  ISSN 0302-9743.  10161 LNCS, s I- IX
  • Jimenez-Ruiz, Ernesto; Hovland, Dag; Slaughter, Laura; Håndstad, Tony & Waaler, Arild (2017). On adopting ontology alignment techniques within the phenotype acquisition process. CEUR Workshop Proceedings.  ISSN 1613-0073.  2042, s 1- 2
  • Pereira, Sunny; Cross, Valerie & Jimenez-Ruiz, Ernesto (2017). On partitioning for ontology alignment. CEUR Workshop Proceedings.  ISSN 1613-0073.  2032, s 219- 220
  • Pereira, Sunny; Cross, Valerie & Jimenez-Ruiz, Ernesto (2017). On partitioning for ontology alignment. CEUR Workshop Proceedings.  ISSN 1613-0073.  1963, s 1- 4
  • Soylu, Ahmet; Giese, Martin; Jimenez-Ruiz, Ernesto; Kharlamov, Evgeny; Schlatte, Rudolf; Neuenstadt, Christian; Özcep, Özgür; Lie, Hallstein; Klungre, Vidar Norstein; Brandt, Sebastian & Horrocks, Ian (2016). Ontology-based Visual Querying with OptiqueVQS: Statoil and Siemens Cases. CEUR Workshop Proceedings.  ISSN 1613-0073.  1818

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Published Oct. 3, 2016 1:08 PM - Last modified Sep. 19, 2018 5:42 PM

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