Torbjørn Rognes

Image of Torbjørn Rognes
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Phone +47-22844787
Mobile phone +47-90755587 +4790755587
Room 4422
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Visiting address Gaustadalléen 23B Ole Johan Dahls hus 0373 OSLO
Postal address Postboks 1080 Blindern 0316 OSLO

I am a professor of bioinformatics leading the Research Group for Biomedical Informatics (BMI) at the Department of Informatics, University of Oslo. I am also affiliated with the new Centre for Bioinformatics. In addition, I work as a research scientist at the Department of Microbiology at Rikshospitalet, Oslo University Hospital (OUS).

Scientific interests

I work on problems in bioinformatics, in particular those related to analysis of DNA and protein sequences. Parallelisation of algorithms for sequence comparisons, searching and clustering of large databases are some of the things I've worked a lot with.

Through the position at the hospital, I've also worked quite a bit with applied bioinformatics, often related to characterisation of genes involved in DNA repair.

Recently, I have developed methods and tools for microbiome bioinformatics, where we analyse sequencing data from amplicon sequencing of rRNAs to determine the composition of microorganisms in samples.

Research projects

VSEARCH: Open and free 64-bit multithreaded tool for processing metagenomic sequences

SWIPE: Smith-Waterman database searches with inter-sequence SIMD parallelisation

SWARM: A robust and fast clustering method for amplicon-based studies

Publika: Publication database for Oslo University Hospital

Available master thesis projects that I may supervise

Please look at the list of all available master thesis projects at BMI.

Current master students

  • Akuzike Banda (with Khuzwayo C. Jere, Chrispin Chaguza, Arox W. Kamng’ona)
  • Sindre Grønmyr (with Junbai Wang and Magnar Bjørås)
  • Christian Ytterhaug Sæther (with Alex D. Rowe)
  • Tommaso Proto (with Ole Kristian Tørresen, Kjetill Jakobsen, Eivind Hovig)
  • Karina Borlaug (with Rolf Skotheim)

Former master students

  • Torgeir P. Tynes (2018)
  • Kristoffer Mjelva (2018)
  • Andreas Glasø Skifjeld (2018, with Karin Lagesen)
  • Aila Aspås (2018, with Karin Lagesen)
  • Sebastian Søberg (2017, with Karin Lagesen)
  • Sean Christian Dutch (2017)
  • Victor Synnes (2017, with Torstein Tengs)
  • Tuva Kristine Thoresen (2015) Fast, Parallel Tools for Genome-wide Analysis of Genomic Divergence (with Geir Kjetil Sandve)
  • Mimi Tantono (2015) Parallelisation of Hierarchical Clustering Algorithms for Metagenomics
  • Reidar A. Brenna (2015) A journey to the core - of man and machine alike (with Jon Hjelmervik, SINTEF)
  • Jorun Ramstad (2015) Protein Alignment on the Intel Xeon Phi Coprocessor (with Jon Hjelmervik, SINTEF)
  • Jakob T. Frielingsdorf (2015) Improving optimal sequence alignments through a SIMD-accelerated library
  • Sabba Ifzal (2015) Reproducibility and reusability pf genome assembly evaluation (with Lex Nederbragt, Geir Kjetil Sandve and Ksenia Khelik)
  • Anders Ramsvik Bragstad (2013) Dynamic benchmarking in bioinformatics (with Geir Kjetil Sandve)
  • Runar Furenes (2013) Genome Assembly: Scaffolding Guided by Related Genomes
  • Matias Holte (2013) Assessment of genomic variant calling methods through simulations
  • Bjørnar A. Ruud (2011) Parallel alignment of short sequence reads on graphics processors
  • Espen Hannisdal (2010) Effective comparison of genetic sequences on parallel computer architectures
  • Daniel Johan Hammer Nebdal (2008) Presenting overrepresented words (with Einar A. Rødland)
  • Arne Olaf Godtland (2007) Aligning of short sequences to whole genomes and a program to verify PCR primers (with Anja B. Kristoffersen)
  • Lise Henriksen (2007) Database of Genes Involved in DNA Repair
  • Geir Ivar Jerstad (2006) Merging the physical properties of DNA with genomic annotations in Ensembl (with Eivind Hovig)
  • Josef Thingnes (2004) Identifisering av ikkje-kodande RNA ved hjelp av samvariansmodellar
  • Gard O. S. Thomassen (2004) Detection of non-coding RNA genes by searching for transcription signals in intergenic regions

Please see the list of all former BMI students for links to their master thesis publications.

Current PhD students

  • Tuva Kristine Thoresen (with Ørnulf Borgan and Bastiaan Star)
  • Eva Lena Fjeld Estensmo (with Håvard Kauserud and others)

Former PhD students

  • Ksenia Khelik (with Lex Nederbragt, Geir Kjetil Sandve and Karin Lagesen) (2019)
  • Srinidhi Varadharajan (with Asbjørn Vøllestad and others) (2019)
  • Pubudu Samarakoon (with Dag Undlien and Robert Lyle) (2017)
  • Bjarne Johannessen (with Rolf Skotheim) (2016)
  • Håvard Aanes (with Peter Alestrøm) (2014)
  • Sabry Razick (with Ian Donaldson) (2012)
  • Sigve Nakken (with Eivind Hovig) (2010)
  • Gard O.S. Thomassen (2010)
  • Karin Lagesen (with Dave W. Ussery) (2008)

Courses where I have the main responsibility

  • IN4030 Introduction to bioinformatics

Courses where I am contributing

  • BIOS4010 Methods in molecular biology and biochemistry I
  • INF5380 / INF9380 High Performance Computing in Bioinformatics
  • IN-BIOS5000IN-BIOS9000 Genome Sequencing Technologies, Assembly, Variant Calling and Statistical Genomics
  • MBV-INF4410 Bioinformatics for molecular biology

Courses that I have contributed to earlier

  • INF325 Introduction to bioinformatics
  • INF2300 Introduction to bioinformatics
  • INF3350 Introduction to bioinformatics
  • INF4130 Algorithms: design and efficiency
  • INF4350 Introduction to bioinformatics
  • INF5330 Bioinformatics
  • INF5340 Algorithms in bioinformatics
  • KJB492 Bioinformatics
  • MBV4010 Methods in molecular biology and biochemistry I
  • MBV-INF4410 / MBV-INF9410 / MBV-INF9410A Applied readings in mathematics
  • MBV9100BTS / MNBTS400 / MNBTS9000 Molecular biology research course
  • MF9210 Laboratory course in molecular biology

Talks

23 October 2014 - Open access from a researcher’s perspective. Open Access Week, Medical Library, University of Oslo.

My profile on other sites

Tags: Life sciences, Bioinformatics, Algorithms, Programming, Parallelisation, Sequence analysis, DNA repair, metagenomics, microbiome

Publications

  • Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B.; Galashevskaya, Anastasia; Rada, Cristina; Sandve, Geir Kjetil; Rognes, Torbjørn; Krokan, Hans Einar & Nilsen, Hilde Loge (2017). Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. Scientific Reports.  ISSN 2045-2322.  7(1) . doi: 10.1038/s41598-017-07314-5 Full text in Research Archive.
  • Khelik, Ksenia; Lagesen, Karin; Sandve, Geir Kjetil; Rognes, Torbjørn & Nederbragt, Alexander Johan (2017). NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. BMC Bioinformatics.  ISSN 1471-2105.  18(1), s 1- 14 . doi: 10.1186/s12859-017-1748-z Full text in Research Archive.
  • Kopylova, Evguenia; Navas-Molina, Jose A.; Mercier, Céline; Xu, Zhenjiang Zech; Mahé, Frédéric; He, Yan; Zhou, Hong-Wei; Rognes, Torbjørn; Caporaso, J. Gregory & Knight, Rob (2016). Open-source sequence clustering methods improve the state of the art. mSystems.  ISSN 2379-5077.  1(1) . doi: 10.1128/mSystems.00003-15 Full text in Research Archive. Show summary
  • Namouchi, Amine; Gomez Munoz, Marta; Frye, Stephan Alfons; Moen, Line Victoria; Rognes, Torbjørn; Tonjum, Tone & Balasingham, Seetha (2016). The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress. BMC Genomics.  ISSN 1471-2164.  17 . doi: 10.1186/s12864-016-3132-1 Full text in Research Archive. Show summary
  • Rognes, Torbjørn; Flouri, Tomáš; Nichols, Ben; Quince, Christopher & Mahé, Frédéric (2016). VSEARCH: A versatile open source tool for metagenomics. PeerJ.  ISSN 2167-8359.  4(10) . doi: 10.7717/peerj.2584 Full text in Research Archive. Show summary
  • Samarakoon, Pubudu Saneth; Sorte, Hanne Sørmo; Stray-Pedersen, Asbjørg; Rødningen, Olaug Kristin; Rognes, Torbjørn & Lyle, Robert (2016). cnvScan: A CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data. BMC Genomics.  ISSN 1471-2164.  17(51) . doi: 10.1186/s12864-016-2374-2 Full text in Research Archive.
  • Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah (2015). Swarm v2: highly-scalable and high-resolution amplicon clustering. PeerJ.  ISSN 2167-8359.  3 . doi: 10.7717/peerj.1420 Full text in Research Archive.
  • Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah (2015). Swarm v2: highly-scalable and high-resolution amplicon clustering. PeerJ Preprints.  ISSN 2167-9843.  3 . doi: 10.7287/peerj.preprints.1222v2
  • Ougland, Rune; Rognes, Torbjørn; Klungland, Arne & Larsen, Elisabeth (2015). Non-homologous functions of the AlkB homologs. Journal of Molecular Cell Biology.  ISSN 1674-2788.  7(6), s 494- 504 . doi: 10.1093/jmcb/mjv029
  • Yang, Mingyi; Lin, Xiaolin; Rowe, Alexander D.; Rognes, Torbjørn; Eide, Lars & Bjørås, Magnar (2015). Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway. Scientific Reports.  ISSN 2045-2322.  5 . doi: 10.1038/srep17409 Full text in Research Archive.
  • Aanes, Håvard; Winata, Cecilia L.; Moen, Lars Fredrik; Østrup, Olga; Mathavan, Sinnakaruppan; Collas, Philippe; Rognes, Torbjørn & Alestrøm, Peter (2014). Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels. PLOS ONE.  ISSN 1932-6203.  9(2) . doi: 10.1371/journal.pone.0089158
  • Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah (2014). Swarm: robust and fast clustering method for amplicon-based studies. PeerJ Preprints.  ISSN 2167-9843.  2 . doi: 10.7287/peerj.preprints.386v1
  • Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah (2014). Swarm: robust and fast clustering method for amplicon-based studies. PeerJ.  ISSN 2167-8359.  2014(1) . doi: 10.7717/peerj.593 Full text in Research Archive. Show summary
  • Backe, Paul Hoff; Simm, Roger; Lærdahl, Jon Kristen; Dalhus, Bjørn; Fagerlund, Annette; Økstad, Ole Andreas Løchen; Rognes, Torbjørn; Alseth, Ingrun; Kolstø, Anne-Brit & Bjørås, Magnar (2013). A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures. Journal of Structural Biology.  ISSN 1047-8477.  183(1), s 66- 75 . doi: 10.1016/j.jsb.2013.04.007 Full text in Research Archive.
  • Booth, James A.; Thomassen, Gard O Sundby; Rowe, Alexander D.; Weel-Sneve, Ragnhild; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar; Rognes, Torbjørn & Lindvall, Jessica Margareta (2013). Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response. Scientific Reports.  ISSN 2045-2322.  3 . doi: 10.1038/srep03053 Full text in Research Archive.
  • Søberg, Kristoffer; Jahnsen, Tore; Rognes, Torbjørn; Skålhegg, Bjørn Steen & Lærdahl, Jon Kristen (2013). Evolutionary Paths of the cAMP-Dependent Protein Kinase (PKA) Catalytic Subunits. PLOS ONE.  ISSN 1932-6203.  8(4) . doi: 10.1371/journal.pone.0060935 Full text in Research Archive.
  • Weel-Sneve, Ragnhild; Kristiansen, Knut Ivan; Odsbu, Ingvild; Dalhus, Bjørn; Booth, James; Rognes, Torbjørn; Skarstad, Kirsten & Bjørås, Magnar (2013). Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities. PLoS Genetics.  ISSN 1553-7390.  9(2) . doi: 10.1371/journal.pgen.1003260 Full text in Research Archive.
  • Nordstrand, Line Mari; Furu, Kari; Paulsen, Jonas; Rognes, Torbjørn & Klungland, Arne (2012). Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nucleic Acids Research.  ISSN 0305-1048.  40(21), s 10950- 10963 . doi: 10.1093/nar/gks839 Full text in Research Archive.
  • Ougland, Rune; Lando, David; Jonson, Ida; Dahl, John Arne; Moen, Marivi; Nordstrand, Line Mari; Rognes, Torbjørn; Lee, Jeannie T; Klungland, Arne; Kouzarides, Tony & Larsen, Elisabeth (2012). ALKBH1 Is a Histone H2A Dioxygenase Involved in Neural Differentiation. Stem Cells.  ISSN 1066-5099.  30(12), s 2672- 2682 . doi: 10.1002/stem.1228 Full text in Research Archive.
  • Søberg, Kristoffer; Larsen, Anja C V; Diskar, Mandy; Backe, Paul Hoff; Bjørås, Magnar; Jahnsen, Tore; Lærdahl, Jon Kristen; Rognes, Torbjørn; Herberg, Friedrich W. & Skålhegg, Bjørn Steen (2012). Identification and Characterization of Novel Mutations in the Human Gene Encoding the Catalytic Subunit Calpha of Protein Kinase A (PKA). PLOS ONE.  ISSN 1932-6203.  7(4) . doi: 10.1371/journal.pone.0034838 Full text in Research Archive.
  • Lærdahl, Jon Kristen; Korvald, Hanne; Nilsen, Line; Dahl-Michelsen, Kristin; Rognes, Torbjørn; Bjørås, Magnar & Alseth, Ingrun (2011). Schizosaccharomyces pombe encodes a mutated AP endonuclease 1. DNA Repair.  ISSN 1568-7864.  10(3), s 296- 305 . doi: 10.1016/j.dnarep.2010.11.014
  • Rognes, Torbjørn (2011). Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation. BMC Bioinformatics.  ISSN 1471-2105.  12 . doi: 10.1186/1471-2105-12-221 Full text in Research Archive.
  • Yang, Mingyi; Aamodt, Randi; Dalhus, Bjørn; Balasingham, Seetha; Helle, Ina Høydal; Andersen, Pernille Strøm; Tønjum, Tone; Alseth, Ingrun; Rognes, Torbjørn & Bjørås, Magnar (2011). The ada operon of Mycobacterium tuberculosis encodes two DNA methyltransferases for inducible repair of DNA alkylation damage. DNA Repair.  ISSN 1568-7864.  10(6), s 595- 602 . doi: 10.1016/j.dnarep.2011.03.007
  • Fensgård, Øyvind; Kassahun, Henok; Izabela Agnieszka, Bombik; Rognes, Torbjørn; Lindvall, Jessica Margareta & Nilsen, Hilde (2010). A Two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways. Aging.  ISSN 1945-4589. Full text in Research Archive. Show summary
  • Møllersen, Linda; Rowe, Alexander D.; Larsen, Elisabeth; Rognes, Torbjørn & Klungland, Arne (2010). Continuous and Periodic Expansion of CAG Repeats in Huntington's Disease R6/1 Mice. PLoS Genetics.  ISSN 1553-7390.  6(12) . doi: 10.1371/journal.pgen.1001242 Full text in Research Archive.
  • Nordstrand, Line Mari; Svärd, Jessica; Larsen, Elisabeth; Nilsen, Anja; Ougland, Rune; Furu, Kari; Lien, Guro Flor; Rognes, Torbjørn; Namekawa, Satoshi H; Lee, Jeannie T & Klungland, Arne (2010). Mice Lacking Alkbh1 Display Sex-Ratio Distortion and Unilateral Eye Defects. PLOS ONE.  ISSN 1932-6203.  5(11) . doi: 10.1371/journal.pone.0013827 Full text in Research Archive.
  • Thomassen, Gard O Sundby; Sneve, Ragnhild; Rowe, Alexander D.; Booth, James; Lindvall, Jessica M.; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar & Rognes, Torbjørn (2010). Tiling Array Analysis of UV Treated Escherichia coli Predicts Novel Differentially Expressed Small Peptides. PLOS ONE.  ISSN 1932-6203.  5(12) . doi: 10.1371/journal.pone.0015356 Full text in Research Archive. Show summary
  • Ambur, Ole Herman; Davidsen, Tonje; Frye, Stephan Alfons; Balasingham, Seetha; Lagesen, Karin; Rognes, Torbjørn & Tønjum, Tone (2009). Genome dynamics in major bacterial pathogens. FEMS Microbiology Reviews.  ISSN 0168-6445.  33(3), s 453- 470 . doi: 10.1111/j.1574-6976.2009.00173.x Full text in Research Archive.
  • Nakken, Sigve; Rognes, Torbjørn & Hovig, Eivind (2009). The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts. Nucleic Acids Research.  ISSN 0305-1048.  37(17), s 5749- 5756 . doi: 10.1093/nar/gkp590 Full text in Research Archive.
  • Nakken, Sigve; Rødland, Einar Andreas; Rognes, Torbjørn & Hovig, Eivind (2009). Large-scale inference of the point mutational spectrum in human segmental duplications. BMC Genomics.  ISSN 1471-2164.  10 . doi: 10.1186/1471-2164-10-43 Full text in Research Archive.
  • Robertson, AB; Klungland, A; Rognes, T & Leiros, Ingar (2009). DNA Repair in Mammalian Cells. Cellular and Molecular Life Sciences (CMLS).  ISSN 1420-682X.  66(6), s 981- 993 . doi: 10.1007/s00018-009-8736-z
  • Skotheim, Rolf Inge; Thomassen, Gard O Sundby; Eken, Marthe; Lind, Guro Elisabeth; Micci, Francesca; Ribeiro, FR; Cerveira, N; Teixeira, MR; Heim, Sverre; Rognes, Torbjørn & Lothe, Ragnhild A (2009). A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Molecular Cancer.  ISSN 1476-4598.  8 . doi: 10.1186/1476-4598-8-5 Full text in Research Archive.
  • Thomassen, Gard O Sundby; Rowe, Alexander D.; Lagesen, Karin; Lindvall, Jessica Margareta & Rognes, Torbjørn (2009). Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays. PLOS ONE.  ISSN 1932-6203.  4(6) Full text in Research Archive.
  • Cameron, J; Holla, OL; Laerdahl, JK; Kulseth, MA; Ranheim, T; Rognes, Torbjørn; Berge, KE & Leren, TP (2008). Characterization of novel mutations in the catalytic domain of the PCSK9 gene. Journal of Internal Medicine.  ISSN 0954-6820.  263(4), s 420- 431 . doi: 10.1111/j.1365-2796.2007.01915.x
  • Cameron, Jamie; Holla, Øystein Lunde; Lærdahl, Jon Kristen; Kulseth, Mari Ann; Ranheim, Trine; Rognes, Torbjørn; Berge, Knut Erik & Leren, Trond Paul (2008). Characterization of novel mutations in the catalytic domain of the PCSK9 gene. Journal of Internal Medicine.  ISSN 0954-6820.  263(4), s 420- 431 . doi: 10.1111/j.1365-2796.2007.01915.x
  • Dalhus, Bjørn; Helle, Ina Høydal; Backe, Paul Hoff; Alseth, Ingrun; Rognes, Torbjørn; Bjørås, Magnar & Lærdahl, Jon Kristen (2007). Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats. Nucleic Acids Research.  ISSN 0305-1048.  35(7), s 2451- 2459 . doi: 10.1093/nar/gkm039 Full text in Research Archive.
  • Klungland, Arne; Lærdahl, Jon Kristen & Rognes, Torbjørn (2007). OGG1: From Structural Analysis to the Knockout Mouse, In Mark D. Evans & Marcus S. Cooke (ed.),  Oxidative Damage to Nucleic Acids.  Springer Science+Business Media B.V..  ISBN 9780387729732.  Chapter 5.  s 67 - 80
  • Lagesen, K; Hallin, P; Rødland, Einar Andreas; Staerfeldt, HH; Rognes, T & Ussery, DW (2007). RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Research.  ISSN 0305-1048.  35 . doi: 10.1093/nar/gkm160 Full text in Research Archive. Show summary
  • Nakken, Sigve; Alseth, Ingrun & Rognes, Torbjørn (2007). Computational prediction of the effects of non-synonymous single nucleotide polymorphisms in human DNA repair genes. Neuroscience.  ISSN 0306-4522.  145 . doi: 10.1016/j.neuroscience.2006.09.004
  • Røyrvik, Ellen Christine; Ahlquist, Terje Cruickshank; Rognes, Torbjørn & Lothe, Ragnhild A (2007). Slip Slidin' Away: A Duodecennial Review of Targeted Genes in Mismatch Repair Deficient Colorectal Cancer. Critical reviews in oncogenesis.  ISSN 0893-9675.  13(1), s 229- 257 . doi: 10.1615/CritRevOncog.v13.i3.20
  • Alseth, Ingrun; Rognes, Torbjørn; Lindbäck, Toril; Solberg, Inger; Robertsen, Kristin; Kristiansen, Knut Ivan; Mainieri, Davide; Lillehagen, Lucy; Kolstø, Anne-Brit & Bjørås, Magnar (2006). A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD. Molecular Microbiology.  ISSN 0950-382X.  59 . doi: 10.1111/j.1365-2958.2006.05044.x Full text in Research Archive.
  • Alseth, Ingrun; Rognes, Torbjørn; Lindbäck, Toril; Solberg, Inger; Robertsen, Kristin; Kristiansen, Knut Ivan; Mainieri, Davide; Lillehagen, Lucy; Kolstø, Anne-Brit & Bjørås, M. (2006). A new protein superfamily includes two novel 3-methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD. Molecular Microbiology.  ISSN 0950-382X.  59(5), s 1602- 1609 Full text in Research Archive. Show summary
  • Thomassen, Gard O. S.; Rosok, Oystein & Rognes, Torbjørn (2006). Computational prediction of microRNAs encoded in viral and other genomes. Journal of Biomedicine and Biotechnology.  ISSN 1110-7243. Full text in Research Archive.
  • Sætrom, Pål; Sneve, Ragnhild; Kristiansen, Knut Ivan; Snøve, Ola; Grünfeld, Thomas; Rognes, Torbjørn & Seeberg, Erling Christen (2005). Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming. Nucleic Acids Research.  ISSN 0305-1048.  33, s 3263- 3270 Full text in Research Archive.
  • Sæbø, Per Eystein; Andersen, SM; Myrseth, Jon; Lærdahl, Jon Kristen & Rognes, Torbjørn (2005). PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology. Nucleic Acids Research.  ISSN 0305-1048.  33 . doi: 10.1093/nar/gki423 Full text in Research Archive.
  • Davidsen, Tonje; Rødland, Einar Andreas; Lagesen, Karin; Seeberg, Erling Christen; Rognes, Torbjørn & Tønjum, Tone (2004). Biased distribution of DNA uptake sequences towards genome maintenance genes. Nucleic Acids Research.  ISSN 0305-1048.  32(3), s 1050- 1058 Full text in Research Archive.

View all works in Cristin

  • Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B.; Galashevskaya, Anastasia; Rada, Christina; Sandve, Geir Kjetil; Rognes, Torbjørn; Krokan, Hans Einar & Nilsen, Hilde Loge (2017). Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.
  • Dalhus, Bjørn; Backe, Paul Hoff; Lærdahl, Jon Kristen; Rowe, Alexander D.; Blicher, Pernille; Forstrøm, Rune Johansen; Rognes, Torbjørn & Bjørås, Magnar (2015). Helse Sør-Øst Core Facility for Structural Biology and Bioinformatics.
  • Hovig, Eivind & Rognes, Torbjørn (2015). Bioinformatikk - å forstå teksten, I: Dag Olav Hessen; Thore Lie & Nils Christian Stenseth (red.),  Mendels arv - Genetikkens æra.  Gyldendal Norsk Forlag A/S.  ISBN 978-82-05-45818-5.  Kapittel 13.  s 329 - 354
  • Andersen, Pernille Strøm; Backe, Paul Hoff; Lærdahl, Jon Kristen; Rowe, Alexander; Forstrøm, Rune Johansen; Rognes, Torbjørn; Bjørås, Magnar & Dalhus, Bjørn (2014). Helse Sør-Øst Core Facility for Structural Biology and Bioinformatics.
  • Rognes, Torbjørn (2014). Open access from a researcher’s perspective.
  • Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Khelik, Ksenia; Lagesen, Karin; Rounge, Trine Ballestad; Star, Bastiaan; Tina, Kirubakaran G.; Berg, Paul Ragnar; Rognes, Torbjørn; Jentoft, Sissel; Winer, Roger; Dewar, Ken & Jakobsen, Kjetill Sigurd (2012). Challenges and Opportunities for Improving the Atlantic Cod Genome Assembly and Annotation.
  • Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Lagesen, Karin; Khelik, Ksenia; Rognes, Torbjørn; Jentoft, Sissel & Jakobsen, Kjetill Sigurd (2012). Improving the cod genome with the use of multi-platform sequencing data.
  • Ambur, Ole Herman; Alfsnes, Kristian; Hovland, Eirik; Homberset, Håvard; Lærdahl, Jon Kristen; Frye, Stephan Alfons; Rognes, Torbjørn; Støen, Mari & Tønjum, Tone (2010). Mechanisms of neisserial transformation and the evolution of sexual reproduction.
  • Nakken, Sigve & Rognes, Torbjørn (2010). Inference of molecular mechanisms from sequence patterns in human DNA variation.
  • Thomassen, Gard O Sundby & Rognes, Torbjørn (2010). Design, analysis and applications of custom high-density oligonucleotide microarrays. Series of dissertations submitted to the Faculty of Medicine, University of Oslo. 965.
  • Fensgård, Øyvind; Lindvall, Jessica Margareta; Kassahun, Henok; Rognes, Torbjørn & Nilsen, Hilde (2009). Microarray analysis of BER mutants.
  • Fensgård, Øyvind; Lindvall, Jessica; Kassahun, Henok; Rognes, Torbjørn & Nilsen, Hilde (2009). Microarray analysis of BER mutants.
  • Lagesen, Karin & Rognes, Torbjørn (2008). Computational characterization of ribosomal RNAs in prokaryotes. Dissertation for the degree of Dr.Med.. 709.
  • Robertsen, Kristin; Kristoffersen, Anja Bråthen & Rognes, Torbjørn (2006). Phylogenetic profiles for identifying new DNA-repair proteins.
  • Rognes, Torbjørn (2006). PARALIGN: Rapid Sequence Similarity Searches Utilizing Several Levels of Parallelism.
  • Davidsen, Tonje; Rødland, Einar Andreas; Lagesen, Karin; Frye, Stephan Alfons; Ambur, Ole Herman; Rognes, Torbjørn & Tonjum, Tone (2003). Biased distribution of bacterial DNA uptake sequences towards genome maintenance genes.
  • Davidsen, Tonje; Frye, Stephan Alfons; Balasingham, Seetha; Assalkhou, Reza; Rognes, Torbjørn; Bjørås, Magnar; Seeberg, Erling Christen & Tonjum, Tone (2002). Genome maintenance in Neisseria meningitidis: the role of base excision repair.

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Published Nov. 4, 2010 2:15 PM - Last modified Aug. 26, 2019 1:58 PM