Ongoing and completed master's projects

Title Published Student(s) Supervisor(s)
A machine learning approach for classification of prostate cancer from RNA data Sep. 25, 2018
Aiming at heterogeneous parallel computing: To overlap or not to overlap? Sep. 20, 2018
Algorithm for droplet digital PCR data classification Sep. 26, 2017
Algorithms for large-scale analysis of genomic data May 24, 2013
Algorithms for rediscovery of cancer mutations in DNA sequencing data from blood plasma Sep. 20, 2017
Analysing big simulation data on the fly Sep. 20, 2018
Analysis pipeline for genome methylation experiments July 2, 2018
API for sequence alignment based on effective parallelisation Aug. 16, 2013
Automated code generation for simulating cardiac cells Nov. 2, 2021
Benchmarking of software for mapping short sequences to a reference genome Aug. 16, 2013
Benchmarking of variant calling and mutation detection tools Aug. 19, 2013
Benchmarking system for genome assembly and/or variant calling software Oct. 25, 2012
Building epigenetic clocks for estimating aging in life after cancer Sep. 12, 2019
Building epigenetics clocks for estimating chemical exposures Nov. 17, 2021
Compressing short reads from high-throughput DNA sequencing June 6, 2011
Computational detection of chimeric sequences Sep. 28, 2015
Computational prediction of ribosomal RNAs Oct. 2, 2014
Contributing to large open-source software libraries June 6, 2011
Creating a highly dynamic benchmarking system June 6, 2011
Developing a web application for MirMachine, a miRNA prediction tool Oct. 15, 2020
Developing a pipeline for deep analyses of cancer-causing bacterial genes from metagenome data Sep. 12, 2019
Developing a pipeline for the analysis of genetic variants of gut microbes Oct. 14, 2020
Developing a tool to remove selected organisms from DNA sequencing data Oct. 22, 2020
Developing an app that allows researchers to follow the progress of jobs running on a high performance computing facility Sep. 16, 2013
Developing benchmarks for genome analysis June 4, 2013