Our latest publications - BMI

  • Brown, Alex; Snapkov, Igor; Akbar, Rahmad; Pavlovic, Milena; Miho, Enkelejda; Sandve, Geir Kjetil & Greiff, Victor (2019). Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires. Molecular Systems Design & Engineering.  ISSN 2058-9689.  4, s 701- 736 . doi: 10.1039/C9ME00071B
  • Lagraviere, Jeremie Alexandre Emilien; Langguth, Johannes; Prugger, Martina; Einkemmer, Lukas; Ha, Hoai Phuong & Cai, Xing (2019). Performance optimization and modeling of fine-grained irregular communication in UPC. Scientific Programming.  ISSN 1058-9244.  2019:6825728, s 1- 20 . doi: 10.1155/2019/6825728
  • Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2019). Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. PloS Computational Biology.  ISSN 1553-734X.  15(2), s 1- 13 . doi: 10.1371/journal.pcbi.1006731
  • Mäki-Marttunen, Tuomo; Krull, Florian; Bettella, Francesco; Hagen, Espen; Næss, Solveig; Ness, Torbjørn V; Moberget, Torgeir; Elvsåshagen, Torbjørn; Metzner, Christoph; Devor, Anna; Edwards, Andrew G.; Fyhn, Marianne; Djurovic, Srdjan; Dale, Anders; Andreassen, Ole Andreas & Einevoll, Gaute (2019). Alterations in schizophrenia-associated genes can lead to increased power in delta oscillations. Cerebral Cortex.  ISSN 1047-3211.  29(2), s 875- 891 . doi: 10.1093/cercor/bhy291
  • Mehlum, Maria Hollund; Liestøl, Knut; Wyller, Torgeir Bruun; Hua, Tsushung A.; Rostrup, Morten & Berge, Eivind (2019). Blood pressure variability in hypertensive patients with atrial fibrillation in the VALUE trial. Blood Pressure.  ISSN 0803-7051. . doi: 10.1080/08037051.2018.1524707
  • Mariampillai, Julian Eek; Prestgaard, Erik Edvard; Kjeldsen, Sverre; Liestøl, Knut; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Berge, Eivind; Grundvold, Irene & Skretteberg, Torger (2019). SBP above 180 mmHg at moderate exercise workload increases coronary heart disease risk in healthy men during 28-year follow-up.. Journal of Hypertension.  ISSN 0263-6352.  37(5), s 949- 955 . doi: 10.1097/HJH.0000000000001959
  • Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit & Mathelier, Anthony (2019). A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research.  ISSN 0305-1048.  47(4), s e21 . doi: 10.1093/nar/gky1210
  • Kanduri, Srinivasa Kalyana Chakravarthi; Bock, Christoph; Gundersen, Sveinung; Hovig, Eivind & Sandve, Geir Kjetil (2019). Colocalization analyses of genomic elements: approaches, recommendations and challenges. Bioinformatics.  ISSN 1367-4803.  35(9), s 1615- 1624 . doi: 10.1093/bioinformatics/bty835 Full text in Research Archive.
  • Azab, Abdulrahman; Meling, Hein; Hovig, Eivind & Pursula, Antti (2018). Filesystem Front-end for Seamless Job Management in Sensitive Data e-Infrastructures and Cloud Federation, In Naoki Abe; Huan Liu; Xiaohua Hu; Nesreen Ahmed; Mu Qiao; Yang Song; Donald Kossmann; Bing Liu; Kisung Lee; Jiliang Tang; Jingrui He & Jeffrey Saltz (ed.),  2018 IEEE International Conference on Big Data (Big Data), Seattle, 10-13 Dec. 2018.  IEEE.  ISBN 978-1-5386-5035-6.  kapittel.
  • Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind (2018). Change in Cardiorespiratory Fitness and Risk of Stroke and Death.. Stroke.  ISSN 0039-2499.  50, s 155- 161 . doi: 10.1161/STROKEAHA.118.021798
  • Vaccaro, Carlos Alberto; López‐Kostner, Francisco; Della Valle, Adriana; Palmero, Edenir Inêz; Rossi, Benedito Mauro; Antelo, Marina; Solano, Angela; Carraro, Dirce Maria; Forones, Nora Manoukian; Bohorquez, Mabel; Lino‐Silva, Leonardo S.; Buleje, Jose; Spirandelli, Florencia; Abe‐Sandes, Kiyoko; Nascimento, Ivana; Sullcahuaman, Yasser; Sarroca, Carlos; Gonzalez, Maria Laura; Herrando, Alberto Ignacio; Alvarez, Karin; Neffa, Florencia; Galvão, Henrique Camposreis; Esperon, Patricia; Golubicki, Mariano; Cisterna, Daniel; Cardoso, Florencia C.; Torrezan, Giovana Tardin; Junior, Samuel Aguiar; Pimenta, Célia Aparecida Marques; Formiga, Maria Nirvana da Cruz; Santos, Erika; Sá, Caroline U.; Oliveira, Edite P.; Fujita, Ricardo; Spirandelli, Enrique; Jimenez, Geiner; Guindalini, Rodrigo Santa Cruz; de Azevedo, Renata Gondim Meira Velame; Bueno, Larissa Souza Mario; Nogueira, Sonia Tereza dos Santos; Loarte, Mariela Torres; Padron, Jorge; Castro‐Mujica, Maria del Carmen; del Monte, Julio Sanchez; Caballero, Carmelo; Peña, Carlos Mario Muñeton; Pinto, Joseph P.; Barletta‐Carrillo, Claudia; Melva, Gutiérrez Angulo; Piñero, Tamara Alejandra; Beltran, Paola Montenegro; Ashton‐Prolla, Patricia; Rodriguez, Yenni; Quispe, Richard; Rossi, Norma Teresa; Martin, Claudia; Chialina, Sergio; Kalfayan, Pablo German; Bazo‐Alvarez, Juan Carlos; Cañete, Alcides Recalde; Dominguez‐Barrera, Constantino; Nuñez, Lina; da Silva, Sabrina Daniela; Balavarca, Yesilda; Vernhoff, Patrik; Plazzer, John‐Paul; Møller, Pål; Hovig, Eivind & Dominguez-Valentin, Mev (2018). From colorectal cancer pattern to the characterization of individuals at risk: Picture for genetic research in Latin America. International Journal of Cancer.  ISSN 0020-7136. . doi: 10.1002/ijc.31920 Full text in Research Archive. Show summary
  • Møller, Elen Kristine; Nord, Silje; Wedge, David C; Lingjærde, Ole Christian; Silwal-Pandit, Laxmi; Gythfeldt, Hedda; Vollan, Hans Kristian Moen; Fleischer, Thomas; Krohn, Marit; Schlichting, Ellen; Borgen, Elin; Garred, Øystein; Holmen, Marit Muri; Wist, Erik; Naume, Bjørn; Van Loo, Peter; Børresen-Dale, Anne-Lise; Engebråten, Olav & Kristensen, Vessela N. (2018). Time series analysis of neoadjuvant chemotherapy and bevacizumab-treated breast carcinomas reveals a systemic shift in genomic aberrations. Genome Medicine.  ISSN 1756-994X.  10:92 . doi: 10.1186/s13073-018-0601-y
  • Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute (2018). Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0. Frontiers in Neuroinformatics.  ISSN 1662-5196.  12(92), s 1- 36 . doi: 10.3389/fninf.2018.00092 Full text in Research Archive. Show summary
  • Domanska, Diana Ewa; Kanduri, Srinivasa Kalyana Chakravarthi; Simovski, Boris & Sandve, Geir Kjetil (2018). Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis. BMC Bioinformatics.  ISSN 1471-2105.  19(481) . doi: 10.1186/s12859-018-2438-1
  • Hutin, David; Tamblyn, Laura; Gomez, Alvin; Grimaldi, Giulia; Soedling, Helen; Cho, Tiffany; Ahmed, Shaimaa; Lucas, Christin; Kanduri, Srinivasa Kalyana Chakravarthi; Grant, Denis M & Matthews, Jason (2018). Hepatocyte-Specific Deletion of TIPARP, a Negative Regulator of the Aryl Hydrocarbon Receptor, Is Sufficient to Increase Sensitivity to Dioxin-Induced Wasting Syndrome. Toxicological Sciences.  ISSN 1096-6080.  165(2), s 347- 360 . doi: 10.1093/toxsci/kfy136
  • Kristiansen, Stein; Sønsteby Hugaas, Mari; Goebel, Vera Hermine; Plagemann, Thomas Peter; Nikolaidis, Konstantinos & Liestøl, Knut (2018). Data Mining for Patient Friendly Apnea Detection. IEEE Access.  ISSN 2169-3536.  6, s 74598- 74615 . doi: 10.1109/ACCESS.2018.2882270
  • Vagos, Marcia Raquel da Silva e Sousa; Van Herck, Ilsbeth Gerarda Maria; Sundnes, Joakim; Arevalo, Hermenegild; Edwards, Andrew & Koivumäki, Jussi (2018). Computational modeling of electrophysiology and pharmacotherapy of atrial fibrillation: Recent advances and future challenges. Frontiers in Physiology.  ISSN 1664-042X.  9:1221, s 1- 29 . doi: 10.3389/fphys.2018.01221
  • Yao, Ying; Zia, Asima; Wyrozemski, Lukasz Adam; Lindeman, Ida; Sandve, Geir Kjetil & Qiao, Shuo Wang (2018). Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. PLoS ONE.  ISSN 1932-6203.  13(12), s 1- 17 . doi: 10.1371/journal.pone.0208484
  • Eilertsen, Ina Andrassy; Sveen, Anita; Strømme, Jonas Meier; Skotheim, Rolf I.; Nesbakken, Arild & Lothe, Ragnhild A (2018). Alternative splicing expands the prognostic impact of KRAS in microsatellite stable primary colorectal cancer. International Journal of Cancer.  ISSN 0020-7136.  144(4), s 841- 847 . doi: 10.1002/ijc.31809 Show summary
  • Lockmer, Sandra; Østenstad, Bjørn; Hagberg, Hans; Holte, Harald; Johansson, Ann-Sofie; Wahlin, Björn Engelbrekt; Wader, Karin Fahl; Steen, Chloe Beate; Meyer, Peter Albert; Maisenhölder, Martin; Smedby, Karin Ekström; Brown, Peter & Kimby, Eva (2018). Chemotherapy-free initial treatment of advanced indolent lymphoma has durable effect with low toxicity: Results from two Nordic lymphoma group trials with more than 10 years of follow-up. Journal of Clinical Oncology.  ISSN 0732-183X.  36(33), s 3315- 3323 . doi: 10.1200/JCO.18.00262
  • Erikssen, Gunnar; Aboulhosn, Jamil; Lin, Jeannette; Liestøl, Knut; Estensen, Mette-Elise; Gjesdal, Ola; Skulstad, Helge; Døhlen, Gaute & Lindberg, Harald L (2018). Survival in patients with univentricular hearts: The impact of right versus left ventricular morphology. Open heart.  ISSN 2053-3624.  5:e000902(2), s 1- 9 . doi: 10.1136/openhrt-2018-000902
  • Varadharajan, Srinidhi; Sandve, Simen Rød; Gillard, Gareth Benjamin; Tørresen, Ole K.; Mulugeta, Teshome Dagne; Hvidsten, Torgeir Rhoden; Lien, Sigbjørn; Vøllestad, Leif Asbjørn; Jentoft, Sissel; Nederbragt, Alexander Johan & Jakobsen, Kjetill Sigurd (2018). The grayling genome reveals selection on gene expression regulation after whole-genome duplication. Genome Biology and Evolution.  ISSN 1759-6653.  10(10), s 2785- 2800 . doi: 10.1093/gbe/evy201
  • Møller, Pål; Seppälä, Toni T.; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paulo; Evans, D. Gareth; Lindblom, Annika; Macrae, Finlay; Blanco, Ignacio; Sijmons, Rolf H.; Jeffries, Jacqueline; Vasen, Hans F.A.; Burn, John; Nakken, Sigve; Hovig, Eivind; Rødland, Einar Andreas; Tharmaratnam, Kukatharmini; de Vos tot Nederveen Cappel, Wouter H.; Hill, James; Wijnen, Juul T.; Jenkins, Mark A.; Green, Kate; Lalloo, Fiona; Sunde, Lone; Mints, Miriam; Bertario, Lucio; Pineda, Marta; Navarro, Matilde; Morak, Monika; Renkonen-Sinisalo, Laura; Dominguez-Valentin, Mev; Frayling, Ian M.; Plazzer, John-Paul; Pylvanainen, Kirsi; Genuardi, Maurizio; Mecklin, Jukka-Pekka; Möslein, Gabriela; Sampson, Julian R. & Capella, Gabriel (2018). Cancer risk and survival in path_MMR carriers by gene and gender up to 75 years of age: a report from the Prospective Lynch Syndrome Database. Gut.  ISSN 0017-5749.  67(7), s 1306- 1316 . doi: 10.1136/gutjnl-2017-314057
  • Simovski, Boris; Kanduri, Srinivasa Kalyana Chakravarthi; Gundersen, Sveinung; Titov, Dmytro; Domanska, Diana Ewa; Bock, Christoph; Bossini-Castillo, Lara; Chikina, Maria; Favorov, Alexander; Layer, Ryan M.; Mironov, Alexandre A.; Quinlan, Aaron R.; Sheffield, Nathan C.; Trynka, Gosia & Sandve, Geir Kjetil (2018). Coloc-stats: A unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Research.  ISSN 0305-1048.  46(1), s W186- W193 . doi: 10.1093/nar/gky474 Full text in Research Archive.
  • Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre; Julius, Stevo; Hua, Tsushung A.; Rothwell, Peter M.; Mancia, Giuseppe; Parati, Gianfranco; Weber, Michael A. & Berge, Eivind (2018). Blood pressure variability and risk of cardiovascular events and death in patients with hypertension and different baseline risks. European Heart Journal.  ISSN 0195-668X.  39(24), s 2243- 2251 . doi: 10.1093/eurheartj/ehx760
  • Tellum, Tina; Nygård, Ståle; Skovholt, Else K.; Qvigstad, Erik & Lieng, Marit (2018). Development of a clinical prediction model for diagnosing adenomyosis. Fertility and Sterility.  ISSN 0015-0282.  110(5), s 957- 964.e3 . doi: 10.1016/j.fertnstert.2018.06.009
  • Rye, Inga Hansine; Trinh, Anne; Sætersdal, Anna Barbro; Nebdal, Daniel J.H.; Lingjærde, Ole Christian; Almendro, Vanessa; Polyak, Kornelia; Børresen-Dale, Anne-Lise; Helland, Åslaug; Markowetz, Florian & Russnes, Hege Elisabeth Giercksky (2018). Intratumor heterogeneity defines treatment-resistant HER2+ breast tumors. Molecular Oncology.  ISSN 1574-7891.  s 1- 18 . doi: 10.1002/1878-0261.12375
  • Tennøe, Simen; Halnes, Geir & Einevoll, Gaute (2018). Uncertainpy: A Python toolbox for uncertainty quantification and sensitivity analysis in computational neuroscience. Frontiers in Neuroinformatics.  ISSN 1662-5196.  12:49, s 1- 29 . doi: 10.3389/fninf.2018.00049 Full text in Research Archive.
  • Engeseth, Kristian; Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Grundvold, Irene; Liestøl, Knut; Kjeldsen, Sverre; Bodegard, Johan; Erikssen, Jan Emil; Gjesdal, Knut & Skretteberg, Torger (2018). Physical fitness is a modifiable predictor of early cardiovascular death: A 35-year follow-up study of 2014 healthy middle-aged men. European Journal of Preventive Cardiology.  ISSN 2047-4873.  25(15), s 1655- 1663 . doi: 10.1177/2047487318793459
  • Winje, Ivan; Sheng, Xia; Hansson, Kenth-Arne; Solbrå, Andreas Våvang; Tennøe, Simen; Saatcioglu, Fahri; Bruusgaard, Jo C. & Gundersen, Kristian (2018). Cachexia does not induce loss of myonuclei or muscle fibres during xenografted prostate cancer in mice. Acta Physiologica.  ISSN 1748-1708.  s 1- 9 . doi: 10.1111/apha.13204
  • Malerød, Lene; Le Borgne, Roland; Lie-Jensen, Anette Christensen; Eikenes, Åsmund Husabø; Brech, Andreas; Liestøl, Knut; Stenmark, Harald & Haglund, Kaisa (2018). Centrosomal ALIX regulates mitotic spindle orientation by modulating astral microtubule dynamics. EMBO Journal.  ISSN 0261-4189.  37(13), s 1- 21 . doi: 10.15252/embj.201797741
  • Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell & Jonassen, Inge (2018). Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research.  ISSN 2046-1402.  7:968 . doi: 10.5256/f1000research.16472.r35600 Full text in Research Archive.
  • Holte, Harald; Beiske, Klaus; Boyle, Merrill; Trøen, Gunhild; Blaker, Yngvild Nuvin; Myklebust, June; Kvaløy, Anne Sunniva; Rosenwald, Andreas; Lingjærde, Ole Christian; Rimsza, Lisa M.; Smeland, Erlend B; Scott, David W. & Kolstad, Arne (2018). The MCL35 gene expression proliferation assay predicts high-risk MCL patients in a Norwegian cohort of younger patients given intensive first line therapy. British Journal of Haematology.  ISSN 0007-1048.  s 1- 10 . doi: 10.1111/bjh.15518
  • Mable, Barbara K.; Brysting, Anne Krag; Jørgensen, Marte Holten; Carbonell, Anna K.Z.; Kiefer, Christiane; Ruiz-Duarte, Paola; Lagesen, Karin & Koch, Marcus A. (2018). Adding Complexity to Complexity: Gene Family Evolution in Polyploids. Frontiers in Ecology and Evolution.  ISSN 2296-701X.  6, s 1- 20 . doi: 10.3389/fevo.2018.00114 Full text in Research Archive.
  • Risnes, Louise Fremgaard; Christophersen, Asbjørn; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Sandve, Geir Kjetil; Sarna, Vikas Kumar; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang & Sollid, Ludvig Magne (2018). Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. Journal of Clinical Investigation.  ISSN 0021-9738.  128(6), s 2642- 2650 . doi: 10.1172/JCI98819 Full text in Research Archive.
  • Ebenesersdóttir, Sigríður Sunna; Sandoval-Velasco, Marcela; Gunnarsdóttir, Ellen D.; Jagadeesan, Anuradha; Guðmundsdóttir, Valdís B.; Thordardóttir, Elísabet L.; Einarsdóttir, Margrét S.; Moore, Kristjan H. S.; Sigurðsson, Ásgeir; Magnúsdóttir, Droplaug N.; Jónsson, Hákon; Snorradóttir, Steinunn; Hovig, Eivind; Møller, Pål; Kockum, Ingrid; Olsson, Tomas; Alfredsson, Lars; Hansen, Thomas F.; Werge, Thomas; Cavalleri, Gianpiero L.; Gilbert, Edmund; Lalueza-Fox, Carles; Walser III, Joe W.; Kristjánsdóttir, Steinunn; Gopalakrishnan, Shyam; Arnadottir, Lilja; Magnússon, Ólafur Þ.; Gilbert, Marcus Thomas Pius; Stefánsson, Kári & Helgason, Agnar (2018). Ancient genomes from Iceland reveal the making of a human population. Science.  ISSN 0036-8075.  360(6392), s 1028- 1032 . doi: 10.1126/science.aar2625 Full text in Research Archive.
  • Dominguez Valentin, Mev; Evans, D. Gareth R.; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål & Hovig, Eivind (2018). Genetic variants of prospectively demonstrated phenocopies in BRCA1/2 kindreds. Hereditary Cancer in Clinical Practice.  ISSN 1731-2302.  16:4, s 1- 14 . doi: 10.1186/s13053-018-0086-0
  • Dragly, Svenn-Arne; Mobarhan, Milad; Lepperød, Mikkel Elle; Tennøe, Simen; Fyhn, Marianne; Hafting, Torkel & Malthe-Sørenssen, Anders (2018). Experimental directory structure (Exdir): An alternative to HDF5 without introducing a new file format. Frontiers in Neuroinformatics.  ISSN 1662-5196.  12 . doi: 10.3389/fninf.2018.00016
  • Balaban, Gabriel; Finsberg, Henrik Nicolay; Funke, Simon Wolfgang; Håland, Trine Synnøve Fink; Hopp, Einar; Sundnes, Joakim; Wall, Samuel T & Rognes, Marie Elisabeth (2018). In vivo estimation of elastic heterogeneity in an infarcted human heart. Biomechanics and Modeling in Mechanobiology.  ISSN 1617-7959.  s 1- 13 . doi: 10.1007/s10237-018-1028-5 Full text in Research Archive.
  • Våtsveen, Thea Kristin; Myhre, Marit Renee; Steen, Chloe Beate; Wälchli, Sébastien; Lingjærde, Ole Christian; Bai, Baoyan; Dillard, Pierre; Theodossiou, Theodossis; Holien, Toril; Sundan, Anders; Inderberg, Else Marit; Smeland, Erlend B; Myklebust, June & Oksvold, Morten Pedersen (2018). Artesunate shows potent anti-tumor activity in B-cell lymphoma. Journal of Hematology & Oncology.  ISSN 1756-8722.  11:23, s 1- 12 . doi: 10.1186/s13045-018-0561-0 Full text in Research Archive.
  • Tørresen, Ole K.; Brieuc, Marine Servane; Solbakken, Monica Hongrø; Sørhus, Elin; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd; Meier, Sonnich; Edvardsen, Rolf & Jentoft, Sissel (2018). Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats. BMC Genomics.  ISSN 1471-2164.  19(240), s 1- 17 . doi: 10.1186/s12864-018-4616-y Full text in Research Archive.
  • Ihle-Hansen, Håkon; Vigen, Thea; Ihle-Hansen, Hege; Rønning, Ole M.; Berge, Trygve; Thommessen, Bente; Lyngbakken, Magnus Nakrem; Orstad, Eivind Bjørkan; Enger, Steve; Nygård, Ståle; Røsjø, Helge & Tveit, Arnljot (2018). Prevalence of carotid plaque in a 63- to 65-Year-Old Norwegian cohort from the general population: The ACE (Akershus Cardiac Examination) 1950 study. Journal of the American Heart Association.  ISSN 2047-9980.  7(10) . doi: 10.1161/JAHA.118.008562
  • Aqrawi, Lara Adnan; Jensen, Janicke Liaaen; Øijordsbakken, Gunnvor; Ruus, Ann-Kristin; Nygård, Ståle; Holden, Marit; Jonsson, Roland; Galtung, Hilde & Skarstein, Kathrine (2018). Signalling pathways identified in salivary glands from primary Sjögren's syndrome patients reveal enhanced adipose tissue development. Autoimmunity.  ISSN 0891-6934.  51(3), s 135- 146 . doi: 10.1080/08916934.2018.1446525 Show summary
  • Campos, Joventino Oliveira; dos Santos, Rodrigo Weber; Sundnes, Joakim & Rocha, Bernardo Martins (2018). Preconditioned augmented Lagrangian formulation for nearly incompressible cardiac mechanics. International Journal for Numerical Methods in Biomedical Engineering.  ISSN 2040-7939.  34(4) . doi: 10.1002/cnm.2948
  • Feinberg, Jonathan; Eck, Vinzenz Gregor & Langtangen, Hans Petter (2018). Multivariate polynomial chaos expansions with dependent variables. SIAM Review.  ISSN 0036-1445.  40(1), s A199- A223 . doi: 10.1137/15M1020447
  • Brynildsen, Jon; Petäjä, Liisa; Pettilä, Ville; Nygård, Ståle; Vaara, Suvi T.; Linko, Rita; Okkonen, Marjatta; Hagve, Tor-Arne; Soininen, Leena; Suojaranta-Ylinen, Raili; Lyngbakken, Magnus Nakrem; Omland, Torbjørn & Røsjø, Helge (2018). The predictive value of NT-proBNP and hs-TnT for risk of death in cardiac surgical patients. Clinical Biochemistry.  ISSN 0009-9120.  53, s 65- 71 . doi: 10.1016/j.clinbiochem.2018.01.012
  • Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål & Hovig, Eivind (2018). Identification of genetic variants for clinical management of familial colorectal tumors. BMC Medical Genetics.  ISSN 1471-2350.  19(1) . doi: 10.1186/s12881-018-0533-9
  • Lie, Kai Kristoffer; Tørresen, Ole K.; Solbakken, Monica Hongrø; Rønnestad, Ivar; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jentoft, Sissel & Sæle, Øystein (2018). Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics.  ISSN 1471-2164.  19(186), s 1- 17 . doi: 10.1186/s12864-018-4570-8 Full text in Research Archive.
  • Vodak, Daniel; Lorenz, Susanne; Nakken, Sigve; Aasheim, Lars Birger; Holte, Harald; Bai, Baoyan; Myklebost, Ola; Meza, Leonardo Zepeda & Hovig, Eivind (2018). Sample-Index Misassignment Impacts Tumour Exome Sequencing. Scientific Reports.  ISSN 2045-2322.  8:5307, s 1- 6 . doi: 10.1038/s41598-018-23563-4 Full text in Research Archive.
  • Finsberg, Henrik Nicolay; Xi, Ce; Tan, Ju Le; Zhong, Liang; Genet, Martin; Sundnes, Joakim; Lee, Lik Chuan & Wall, Samuel T (2018). Efficient estimation of personalized biventricular mechanical function employing gradient‐based optimization. International Journal for Numerical Methods in Biomedical Engineering.  ISSN 2040-7939.  34(7) . doi: 10.1002/cnm.2982
  • Birkeland, Einar Elvbakken; Zhang, Shan; Poduval, Deepak; Geisler, Jürgen; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda; Hovig, Eivind; Myklebost, Ola; Knappskog, Stian & Lønning, Per Eystein (2018). Patterns of genomic evolution in advanced melanoma. Nature Communications.  ISSN 2041-1723.  9:2665, s 1- 12 . doi: 10.1038/s41467-018-05063-1 Full text in Research Archive.
  • Finsberg, Henrik Nicolay; Balaban, Gabriel; Ross, Stian Balnagown; Håland, Trine Synnøve Fink; Odland, Hans Henrik; Sundnes, Joakim & Wall, Samuel Thomas (2018). Estimating cardiac contraction through high resolution data assimilation of a personalized mechanical model. Journal of Computational Science.  ISSN 1877-7503.  24, s 85- 90 . doi: 10.1016/j.jocs.2017.07.013 Full text in Research Archive. Show summary
  • Kallhovd, Siri; Maleckar, Mary Margot Catherine & Rognes, Marie Elisabeth (2018). Inverse estimation of cardiac activation times via gradient-based optimization. International Journal for Numerical Methods in Biomedical Engineering.  ISSN 2040-7939.  34(2) . doi: 10.1002/cnm.2919
  • Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn (2018). Human ectoparasites and the spread of plague in Europe during the Second Pandemic. Proceedings of the National Academy of Sciences of the United States of America.  ISSN 0027-8424.  115(6), s 1304- 1309 . doi: 10.1073/pnas.1715640115
  • Danielsen, Håvard Emil; Hveem, Tarjei Sveinsgjerd; Domingo, Enric; Pradhan, Manohar; Kleppe, Andreas; Syvertsen, Rolf Anders; Kostolomov, Ilya; Nesheim, John Arne; Askautrud, Hanne Arenberg; Nesbakken, Arild; Lothe, Ragnhild A; Svindland, Aud; Shephard, Neil; Novelli, Marco; Johnstone, Elaine; Tomlinson, I; Kerr, Rachel & Kerr, David (2018). Prognostic markers for colorectal cancer: Estimating ploidy and stroma. Annals of Oncology.  ISSN 0923-7534.  29(3), s 616- 623 . doi: 10.1093/annonc/mdx794
  • Prestgaard, Erik Edvard; Hodnesdal, Christian; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind (2017). Long-term predictors of stroke in healthy middle-aged men. International Journal of Stroke.  ISSN 1747-4930.  13(3), s 292- 300 . doi: 10.1177/1747493017730760
  • Timmermann, Viviane; Dejgaard, Lars; Haugaa, Kristina; Edwards, Andrew; Sundnes, Joakim; McCulloch, Andrew D. & Wall, Samuel Thomas (2017). An integrative appraisal of mechano-electric feedback mechanisms in the heart. Progress in Biophysics and Molecular Biology.  ISSN 0079-6107.  130, s 404- 417 . doi: 10.1016/j.pbiomolbio.2017.08.008
  • Rand, Knut Dagestad; Grytten, Ivar; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2017). Coordinates and intervals in graph-based reference genomes. BMC Bioinformatics.  ISSN 1471-2105.  18:263, s 1- 8 . doi: 10.1186/s12859-017-1678-9 Full text in Research Archive.
  • Romaine, Andreas; Sørensen, Ida Wiig; Zeltz, Cedric; Lu, Ning; Erusappan, Pugazendhi Murugan; Melleby, Arne Olav; Zhang, Lili; Bendiksen, Bård Andre; Robinson, EL; Aronsen, Jan Magnus; Herum, Kate Louise Møller; Danielsen, Håvard Emil; Sjaastad, Ivar; Christensen, Geir Arve & Gullberg, Donald (2017). Overexpression of integrin α11 induces cardiac fibrosis in mice. Acta Physiologica Scandinavica.  ISSN 0001-6772.  222:e13025(2), s 1- 17 . doi: 10.1111/apha.12932
  • Paulsen, Geir; Clark, Stuart R; Nordmoen, Bjørn; Nenakhov, Sergey; Andersson, Aron; Cai, Xing & Dahle, Hans Petter (2017). Automated Translation of MATLAB Code to C++ with Performance and Traceability, In Claus-Peter Rückemann & D Vucinic (ed.),  Proceedings of the Eleventh International Conference on Advanced Engineering Computing and Applications in Sciences (ADVCOMP 2017).  International Academy, Research and Industry Association (IARIA).  ISBN 978-1-61208-599-9.  11.  s 50 - 55
  • Salvatore, Stefania; Domanska, Diana Ewa; Wood, Mollie; Nordeng, Hedvig Marie Egeland & Sandve, Geir Kjetil (2017). Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy. PLoS ONE.  ISSN 1932-6203.  12(12) . doi: 10.1371/journal.pone.0190101 Full text in Research Archive.

View all works in Cristin

  • Silwal-Pandit, Laxmi; Stålberg, Stina Margrethe; Mermelekas, G; Lothe, Inger Marie Bowitz; Skrede, Martina Landschoof; Dalsgaard, Astrid M.; Helland, Åshild; Skålhegg, Bjørn Steen; Labori, Knut Jørgen; Lingjærde, Ole Christian & Kure, Elin Wenche Hegland (2019). Proteomic Landscape of Pancreatic Ductal Adenocarcinoma.
  • Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ulven, Stine Marie; Lucas, Christin; Bindesbøll, Christian; Lemma, Roza Berhanu; Gabrielsen, Odd Stokke; Grønning-Wang, Line Mariann; Nebb, Hilde Irene & Sæther, Thomas (2018). LXRα interacts with the glucose-sensing transcription factor ChREBPα and increases its transcriptional activity.
  • Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre & Berge, Eivind (2018). Response to letters from Torp-Pedersen and colleagues and de Courson and colleagues. European Heart Journal.  ISSN 0195-668X.  39(47), s 4221- 4221 . doi: 10.1093/eurheartj/ehy605
  • Næss, Solveig; Ness, Torbjørn V; Hagen, Espen & Einevoll, Gaute (2018). Biophysical modelling of EEG signals from large neural populations.
  • Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn (2018). Reply to Park et al.: Human ectoparasite transmission of plague during the Second Pandemic is still plausible. Proceedings of the National Academy of Sciences of the United States of America.  ISSN 0027-8424.  115(34), s E7894- E7895 . doi: 10.1073/pnas.1810221115
  • Blanco Gonzalez, Enrique; Jentoft, Sissel; Hansen, Michael Møller; Knutsen, Halvor; Sodeland, Marte; Mattingsdal, Morten; Stenseth, Nils Christian; Robalo, Joana I. & Jorde, Per Erik (2018). Understanding adaptation in translocating wrasses.
  • Tarabichi, Maxime; Martincorena, Iñigo; Gerstung, Moritz; Leroi, Armand M.; Markowetz, Florian; Spellman, Paul; Morris, Quaid D; Lingjærde, Ole Christian; Wedge, David C. & Van Loo, Peter (2018). Neutral tumor evolution?. Nature Genetics.  ISSN 1061-4036.  50(12), s 1630- 1633 . doi: 10.1038/s41588-018-0258-x
  • Tennøe, Simen; Halnes, Geir & Einevoll, Gaute (2018). Uncertainpy: A Python toolbox for uncertainty quantification and sensitivity analysis of computational neuroscience models.
  • Reinar, William Brynildsen; Tørresen, Ole K.; Matschiner, Michael; Jentoft, Sissel; Nederbragt, Alexander Johan & Jakobsen, Kjetill Sigurd (2018). The impact of repetitive DNA on speciation rates in teleost fish.
  • Tabib, Mandar; Khan, Malik Muhammad Zaki Murtaza; Lingjærde, Ole Christian; Johannessen, Kjetil Andre; Rasheed, Adil; Fonn, Eivind; Masegosa, Andres & Brodtkorb, André R. (2018). Geilo Winter School in eScience on Artificial Intelligence.
  • Langguth, Johannes; Hermenegild, Arevalo; Jarvis, Chad & Cai, Xing (2018). Towards Detailed Organ-Scale Simulations in Cardiac Electrophysiology.
  • Cai, Xing (2018). Heterogeneous Computing: Programming, Performance and Applications.
  • Trotter, James David; Langguth, Johannes & Cai, Xing (2018). Quantifying data traffic of sparse matrix-vector multiplication in a multi-level memory hierarchy.
  • Cai, Xing (2018). Education in HPC and Data Science at Simula Research Lab and UiO.
  • Thune, Andreas & Cai, Xing (2018). Unstructured mesh partitioning in the presence of strong coefficient heterogeneity.
  • Dragly, Svenn-Arne; Mobarhan, Milad; Lepperød, Mikkel Elle; Tennøe, Simen; Stasik, Alexander Johannes; Fyhn, Marianne; Hafting, Torkel & Malthe-Sørenssen, Anders (2018). Exdir An alternative to HDF5 that uses Numpy files for data, YAML for metadata and simple directories to define the hierarchy.
  • Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute (2018). Multimodal modeling of neural network activity: computing LFP, ECoG, EEG and MEG signals with LFPy 2.0.
  • Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute (2018). Multimodal modeling of neural network activity: computing LFP, ECoG, EEG and MEG signals with LFPy2.0.
  • Rajpert-De Meyts, Ewa & Skotheim, Rolf I. (2018). Complex Polygenic Nature of Testicular Germ Cell Cancer Suggests Multifactorial Aetiology. European Urology.  ISSN 0302-2838.  73(6), s 832- 833 . doi: 10.1016/j.eururo.2018.02.023
  • Kaveh, Fatemeh; Baumbusch, Lars Oliver; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian; Edvardsen, Hege; Kristensen, Vessela N. & Solvang, Hiroko Kato (2018). Correction: A systematic comparison of copy number alterations in four types of female cancer. BMC Cancer.  ISSN 1471-2407.  18(80) . doi: 10.1186/s12885-017-3766-7
  • Tennøe, Simen (2018). How to model effects of uncertain model parameters with Uncertainpy..
  • Bjørkhaug, Steinar Traae; Aanes, Håvard; Medhus, Asle Wilhelm; Skar, Viggo Øystein; Malvik, Stine; Henriksen, Christine; Neupane, Sudan Prasad; Bramness, Jørgen Gustav & Valeur, Jørgen (2018). Tarmfloraendringer hos pasienter med forhøyet alkoholkonsum.
  • Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B.; Galashevskaya, Anastasia; Rada, Christina; Sandve, Geir Kjetil; Rognes, Torbjørn; Krokan, Hans Einar & Nilsen, Hilde Loge (2017). Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.
  • Pettersen, Klas; Holter, Karl Erik; Kehlet, Benjamin; Devor, Anna; Sejnowski, Terrence J.; Dale, Anders; Omholt, Stig William; Ottersen, Ole Petter; Mardal, Kent-Andre & Nagelhus, Erlend Arnulf (2017). Interstitial solute transport in 3D reconstructed neuropil: Diffusion predominates.
  • Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute (2017). Computing brain signals (CBra): Concurrent simulation of network activity, extracellular electric potentials and magnetic fields.
  • Næss, Solveig; Ness, Torbjørn V; Halnes, Geir; Halgren, Eric; Dale, Anders M. & Einevoll, Gaute (2017). Biophysical modeling of single neuron contributions to ECoG and EEG signals.
  • Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute (2017). Computing Brain Signals: concurrent simulation of network activity, extracellular electric potentials and magnetic fields.
  • Næss, Solveig; Ness, Torbjørn V; Halnes, Geir; Halgren, Eric; Dale, Anders M. & Einevoll, Gaute (2017). Biophysical modeling of single-neuron contributions to ECoG and EEG signals.
  • Næss, Solveig (2017). Biophysical Modeling of Single Neuron Contributions to ECoG and EEG signals.
  • Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute (2017). Computing Brain Signals (CBra): Concurrent simulation of network activity, extracellular electric potentials and magnetic fields.
  • Næss, Solveig; Ness, Torbjørn V; Halnes, Geir; Halgren, Eric; Dale, Anders & Einevoll, Gaute (2017). Biophysical modeling of single-neuron contributions toECoG, EEG and MEG signals.
  • Dragly, Svenn-Arne; Mobarhan, Milad; Solbrå, Andreas Våvang; Tennøe, Simen; Hafreager, Anders; Malthe-Sørenssen, Anders; Fyhn, Marianne; Hafting, Torkel & Einevoll, Gaute (2017). Neuronify: An Educational Simulator for Neural Circuits. Show summary
  • Tennøe, Simen; Mobarhan, Milad; Dragly, Svenn-Arne; Solbrå, Andreas Våvang & Nederbragt, Alexander Johan (2017). Teaching modelling to first-year biology students. Show summary
  • Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind & Jonassen, Inge (2017). ELIXIR.NO - The national infrastructure for bioinformatics.
  • Nederbragt, Alexander Johan (2017). How I got infected by fish genomics - and how you can too.
  • Nederbragt, Alexander Johan (2017). Software Carpentry og Data Carpentry: opplæring i bruk og deling av forskningsdata – for forskere, av forskere, ved UiO.
  • Nederbragt, Alexander Johan (2017). Teaching Researchers Basic Skills for Computational Research: the Software Carpentry Model.
  • Cai, Xing & Langguth, Johannes (2017). Accelerated high-performance computing for computational cardiac electrophysiology.
  • Kanduri, Chakravarthi; Domanska, Diana; Hovig, Eivind & Sandve, Geir Kjetil (2017). Genome build information is an essential part of genomic track files. Genome Biology.  ISSN 1465-6906.  18(1) . doi: 10.1186/s13059-017-1312-1

View all works in Cristin