Software

Several software packages have been developed at the Centre. Below is a list of some of them.

See also our GitHub repository.

Software for extraction of DNA copy number motifs in cancer

Chimeraviz manages data from fusion gene finders and provides useful visualization tools.

Comparison of Adaptive Immune Receptor Repertoires

Statistical methodology and computing power to handle a variety of biological inquires on genomic datasets

immuneML: an ecosystem for machine learning analysis of adaptive immune receptor repertoires

MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions

ScaR — a tool for sensitive detection of known fusion transcripts: establishing prevalence of fusions in testicular germ cell tumors

Highly-scalable and high-resolution amplicon clustering

A versatile open source tool for metagenomics