Swarm

Highly-scalable and high-resolution amplicon clustering

Papers

  • Mahé F, Czech L, Stamatakis A, Quince C, de Vargas C, Dunthorn M, Rognes T (2021)
    Swarm v3: towards tera-scale amplicon clustering
    Bioinformatics (in press)
  • Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M (2015)
    Swarm v2: highly-scalable and high-resolution amplicon clustering
    PeerJ, 3, e1420. doi 10.7717/peerj.1420
  • Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M (2014)
    Swarm: robust and fast clustering method for amplicon-based studies
    PeerJ, 2, e593. doi 10.7717/peerj.593

Software availability

Swarm repository on GitHub 

Groups involved

Rognes group

Published Aug. 21, 2019 10:52 AM - Last modified June 16, 2021 10:21 AM