Cleaning glass

There are many levels of cleaning, we will introduce the basics

Cleaning procedure depends on what kind of dirt is sticking to the surface and how fragile the surface is.

  • Microscope slides, cover glass, objectives and lenses: cleaning with paper/Q-tips is OK
  • Chrome on glass photomasks: 
    • High-purity Isopropyl Alcohol (IPA) 
    • Cleanroom-grade, lint-free wipe. 
    • Acetone may also be used in specific cases involving heavy organic contamination or adhesive residues. 
    • To avoid damaging the chrome the use of paper/Q-tips should be very light or avoided
  • "Sticky dirt", SU8, etc, in rising order:
    • Water + detergent + rubbing with paper/Q-tips
    • Ultrasound bath with acetone at room temp or higher temp
    • Acetone bath + rubbing with paper/Q-tips
    • Piranha solution (we don't let students use this)
  • Light soiling (e.g., fingerprints or dust): 
    • A gentle wipe with IPA is typically all that’s required.

Final cleaning (to remove last residues of organics) and activation of glass surface:

  • Plasma cleaner in room 128
  • Deep UV in Giæver lab:
    • Place the glass side to be activated facing up towards the UV source
    • Turn on notrigen flow for 1 minute
    • Turn on UV lamps and illuminate for 5 minutes
  • Immediately use the activated, hydrophilic glass for downstream processes like micro-patterning, PLL-g-PEG coating, or adhesive bonding.

Other labs procedures:

 

Activation of glass surface

  • Photolytic Breakdown: High-energy UV photons break molecular bonds (like C-H, C-C, and C-O) in organic impurities on the glass.
  • Ozone Generation: Shorter wavelengths (such as 185 nm) generate ozone (O₃) from ambient oxygen, which further oxidizes broken organic fragments into volatile gases like CO₂ and H₂O.
  • Hydrophilicity: The process introduces polar functional groups—such as hydroxyl (–OH)—onto the silicate surface, rendering it highly hydrophilic and increasing surface energy.
  • Immediately use the activated, hydrophilic glass for downstream processes like micro-patterning, molecular functionalization (e.g., PLL-g-PEG coating), or adhesive bonding.
Published Sep. 23, 2026 11:59 AM - Last modified Sep. 23, 2026 12:00 PM