SCML - Scientific Computing and Machine Learning
Publications 2012-2023
2023
A Breast Cancer Polygenic Risk Score Is Feasible for Risk Stratification in the Norwegian Population. Akdeniz, Bayram Cevdet ; Mattingsdal, Morten; Dominguez-Valentin, Mev; Frei, Oleksandr; Shadrin, Alexey; Puustusmaa, Mikk; Saar, Regina; Sõber, Siim; Møller, Pål; Andreassen, Ole et al.. 2023, Cancers.
https://doi.org/10.3390/cancers15164124 (Academic article)
A Breast Cancer Polygenic Risk Score Is Feasible for Risk Stratification in the Norwegian Population. Akdeniz, Bayram Cevdet ; Mattingsdal, Morten; Dominguez-Valentin, Mev; Frei, Oleksandr; Shadrin, Alexey; Puustusmaa, Mikk; Saar, Regina; Sõber, Siim; Møller, Pål; Andreassen, Ole et al.. 2023, Cancers.
https://doi.org/10.3390/cancers15164124 (Academic article)
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. Hsieh, Ping-Han; Lopes-Ramos, Camila Miranda; Zucknick, Manuela; Sandve, Geir Kjetil Ferkingstad; Glass, Kimberly & Kuijjer, Marieke. 2023, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btad610 (Academic article)
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. Hsieh, Ping-Han; Lopes-Ramos, Camila Miranda; Zucknick, Manuela; Sandve, Geir Kjetil Ferkingstad; Glass, Kimberly & Kuijjer, Marieke. 2023, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btad610 (Academic article)
ANDA: an open-source tool for automated image analysis of in vitro neuronal cells. Wæhler, Hallvard Austin; Labba, Nils-Anders Johannes; Paulsen, Ragnhild Elisabeth Heimtun; Sandve, Geir Kjetil Ferkingstad & Eskeland, Ragnhild. 2023, BMC Neuroscience.
https://doi.org/10.1186/s12868-023-00826-z (Academic article)
ANDA: an open-source tool for automated image analysis of in vitro neuronal cells. Wæhler, Hallvard Austin; Labba, Nils-Anders Johannes; Paulsen, Ragnhild Elisabeth Heimtun; Sandve, Geir Kjetil Ferkingstad & Eskeland, Ragnhild. 2023, BMC Neuroscience.
https://doi.org/10.1186/s12868-023-00826-z (Academic article)
Artificial intelligence-driven prediction of COVID-19-related hospitalization and death: a systematic review. Shakibfar, Saeed; Nyberg, Fredrik; Li, Huiqi; Zhao, Jing; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Pavlović, Milena; Hajiebrahimi, Mohammadhossein; Andersen, Morten & Sessa, Maurizio. 2023, Frontiers in Public Health.
https://doi.org/10.3389/fpubh.2023.1183725 (Academic literature review)
Artificial intelligence-driven prediction of COVID-19-related hospitalization and death: a systematic review. Shakibfar, Saeed; Nyberg, Fredrik; Li, Huiqi; Zhao, Jing; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Pavlović, Milena; Hajiebrahimi, Mohammadhossein; Andersen, Morten & Sessa, Maurizio. 2023, Frontiers in Public Health.
https://doi.org/10.3389/fpubh.2023.1183725 (Academic literature review)
Chromosomal instability and a deregulated cell cycle are intrinsic features of high-risk gastrointestinal stromal tumours with a metastatic potential. Namløs, Heidi Maria; Khelik, Ksenia; Nakken, Sigve; Vodak, Daniel; Hovig, Eivind; Myklebost, Ola; Pedersen, Kjetil Boye & Meza, Leonardo Zepeda. 2023, Molecular Oncology.
https://doi.org/10.1002/1878-0261.13514 (Academic article)
Chromosomal instability and a deregulated cell cycle are intrinsic features of high-risk gastrointestinal stromal tumours with a metastatic potential. Namløs, Heidi Maria; Khelik, Ksenia; Nakken, Sigve; Vodak, Daniel; Hovig, Eivind; Myklebost, Ola; Pedersen, Kjetil Boye & Meza, Leonardo Zepeda. 2023, Molecular Oncology.
https://doi.org/10.1002/1878-0261.13514 (Academic article)
Comprehensive interrogation of gene lists from genome-scale cancer screens with oncoEnrichR. Nakken, Sigve; Gundersen, Sveinung; Bernal, Fabian Leonardo Martinez; Polychronopoulos, Dimitris; Hovig, Eivind & Wesche, Jørgen. 2023, International Journal of Cancer.
https://doi.org/10.1002/ijc.34666 (Academic article)
Comprehensive interrogation of gene lists from genome-scale cancer screens with oncoEnrichR. Nakken, Sigve; Gundersen, Sveinung; Bernal, Fabian Leonardo Martinez; Polychronopoulos, Dimitris; Hovig, Eivind & Wesche, Jørgen. 2023, International Journal of Cancer.
https://doi.org/10.1002/ijc.34666 (Academic article)
DagSim: Combining DAG-based model structure with unconstrained data types and relations for flexible, transparent, and modularized data simulation. al Hajj, Ghadi; Pensar, Johan & Sandve, Geir Kjetil Ferkingstad. 2023, PLOS ONE.
https://doi.org/10.1371/journal.pone.0284443 (Academic article)
DagSim: Combining DAG-based model structure with unconstrained data types and relations for flexible, transparent, and modularized data simulation. al Hajj, Ghadi; Pensar, Johan & Sandve, Geir Kjetil Ferkingstad. 2023, PLOS ONE.
https://doi.org/10.1371/journal.pone.0284443 (Academic article)
Dominantly inherited micro-satellite instable cancer – the four Lynch syndromes - an EHTG, PLSD position statement. Møller, Pål; Seppälä, Toni T.; Ahadova, Aysel; Crosbie, Emma J.; Holinski-Feder, Elke; Scott, Rodney; Haupt, Saskia; Möslein, Gabriela; Winship, Ingrid; Broeke, Sanne W. Bajwa-ten et al.. 2023, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-023-00263-3 (Academic literature review)
Dominantly inherited micro-satellite instable cancer – the four Lynch syndromes - an EHTG, PLSD position statement. Møller, Pål; Seppälä, Toni T.; Ahadova, Aysel; Crosbie, Emma J.; Holinski-Feder, Elke; Scott, Rodney; Haupt, Saskia; Möslein, Gabriela; Winship, Ingrid; Broeke, Sanne W. Bajwa-ten et al.. 2023, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-023-00263-3 (Academic literature review)
Effects of prenatal exposure to (es)citalopram and maternal depression during pregnancy on DNA methylation and child neurodevelopment. Olstad, Emilie Willoch; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Lyle, Robert & Gervin, Kristina. 2023, Translational Psychiatry.
https://doi.org/10.1038/s41398-023-02441-2 (Academic article)
Effects of prenatal exposure to (es)citalopram and maternal depression during pregnancy on DNA methylation and child neurodevelopment. Olstad, Emilie Willoch; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Lyle, Robert & Gervin, Kristina. 2023, Translational Psychiatry.
https://doi.org/10.1038/s41398-023-02441-2 (Academic article)
Gene expression and copy number profiling of follicular lymphoma biopsies from patients treated with first-line rituximab without chemotherapy. Leich, E.; Brodtkorb, Marianne; Schmidt, T.; Altenbuchinger, M.; Lingjærde, Ole Christian; Lockmer, S.; Holte, Harald; Nedeva, T.; Grieb, T.; Sander, B. et al.. 2023, Leukemia and Lymphoma.
https://doi.org/10.1080/10428194.2023.2240462 (Academic article)
Gene expression and copy number profiling of follicular lymphoma biopsies from patients treated with first-line rituximab without chemotherapy. Leich, E.; Brodtkorb, Marianne; Schmidt, T.; Altenbuchinger, M.; Lingjærde, Ole Christian; Lockmer, S.; Holte, Harald; Nedeva, T.; Grieb, T.; Sander, B. et al.. 2023, Leukemia and Lymphoma.
https://doi.org/10.1080/10428194.2023.2240462 (Academic article)
hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks. Kalyanasundaram, Sumana; Lefol, Yohan Pierre; Gundersen, Sveinung; Rognes, Torbjørn; Alsøe, Lene; Nilsen, Hilde; Hovig, Eivind; Sandve, Geir Kjetil Ferkingstad & Domanska, Diana. 2023, PLOS ONE.
https://doi.org/10.1371/journal.pone.0286330 (Academic article)
hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks. Kalyanasundaram, Sumana; Lefol, Yohan Pierre; Gundersen, Sveinung; Rognes, Torbjørn; Alsøe, Lene; Nilsen, Hilde; Hovig, Eivind; Sandve, Geir Kjetil Ferkingstad & Domanska, Diana. 2023, PLOS ONE.
https://doi.org/10.1371/journal.pone.0286330 (Academic article)
HoCoRT: host contamination removal tool. Rumbavicius, Ignas; Rounge, Trine Ballestad & Rognes, Torbjørn. 2023, BMC Bioinformatics.
https://doi.org/10.1186/s12859-023-05492-w (Academic article)
HoCoRT: host contamination removal tool. Rumbavicius, Ignas; Rounge, Trine Ballestad & Rognes, Torbjørn. 2023, BMC Bioinformatics.
https://doi.org/10.1186/s12859-023-05492-w (Academic article)
Identification of gluten T cell epitopes driving celiac disease. Chlubnova, Marketa; Christophersen, Asbjørn Otto; Sandve, Geir Kjetil Ferkingstad; Lundin, Knut Erik Aslaksen; Jahnsen, Jørgen; Dahal-Koirala, Shiva & Sollid, Ludvig Magne. 2023, Science Advances.
https://doi.org/10.1126/sciadv.ade5800 (Academic article)
Identification of gluten T cell epitopes driving celiac disease. Chlubnova, Marketa; Christophersen, Asbjørn Otto; Sandve, Geir Kjetil Ferkingstad; Lundin, Knut Erik Aslaksen; Jahnsen, Jørgen; Dahal-Koirala, Shiva & Sollid, Ludvig Magne. 2023, Science Advances.
https://doi.org/10.1126/sciadv.ade5800 (Academic article)
Linguistically inspired roadmap for building biologically reliable protein language models. Vu, Mai Ha; Akbar, Rahmad; Robert, Philippe; Sandve, Geir Kjetil Ferkingstad; Haug, Dag Trygve Truslew & Greiff, Victor. 2023, Nature Machine Intelligence.
https://doi.org/10.1038/s42256-023-00637-1 (Article in business/trade/industry journal)
Linguistically inspired roadmap for building biologically reliable protein language models. Vu, Mai Ha; Akbar, Rahmad; Robert, Philippe; Sandve, Geir Kjetil Ferkingstad; Haug, Dag Trygve Truslew & Greiff, Victor. 2023, Nature Machine Intelligence.
https://doi.org/10.1038/s42256-023-00637-1 (Article in business/trade/industry journal)
Machine learning-driven development of a disease risk score for COVID-19 hospitalization and mortality: a Swedish and Norwegian register-based study. Shakibfar, Saeed; Zhao, Jing; Li, Huiqi; Nordeng, Hedvig Marie Egeland; Lupattelli, Angela; Pavlović, Milena; Sandve, Geir Kjetil Ferkingstad; Nyberg, Fredrik; Wettermark, Björn; Hajiebrahimi, Mohammadhossein et al.. 2023, Frontiers in Public Health.
https://doi.org/10.3389/fpubh.2023.1258840 (Academic article)
Machine learning-driven development of a disease risk score for COVID-19 hospitalization and mortality: a Swedish and Norwegian register-based study. Shakibfar, Saeed; Zhao, Jing; Li, Huiqi; Nordeng, Hedvig Marie Egeland; Lupattelli, Angela; Pavlović, Milena; Sandve, Geir Kjetil Ferkingstad; Nyberg, Fredrik; Wettermark, Björn; Hajiebrahimi, Mohammadhossein et al.. 2023, Frontiers in Public Health.
https://doi.org/10.3389/fpubh.2023.1258840 (Academic article)
Mortality by age, gene and gender in carriers of pathogenic mismatch repair gene variants receiving surveillance for early cancer diagnosis and treatment: a report from the prospective Lynch syndrome database. Dominguez-Valentin, Mev; Haupt, Saskia; Seppälä, Toni T.; Sampson, Julian R.; Sunde, Lone; Bernstein, Inge; Jenkins, Mark A.; Engel, Christoph; Aretz, Stefan; Nielsen, Maartje et al.. 2023, EClinicalMedicine.
https://doi.org/10.1016/j.eclinm.2023.101909 (Academic article)
Mortality by age, gene and gender in carriers of pathogenic mismatch repair gene variants receiving surveillance for early cancer diagnosis and treatment: a report from the prospective Lynch syndrome database. Dominguez-Valentin, Mev; Haupt, Saskia; Seppälä, Toni T.; Sampson, Julian R.; Sunde, Lone; Bernstein, Inge; Jenkins, Mark A.; Engel, Christoph; Aretz, Stefan; Nielsen, Maartje et al.. 2023, EClinicalMedicine.
https://doi.org/10.1016/j.eclinm.2023.101909 (Academic article)
simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods. Kanduri, Chakravarthi; Scheffer, Lonneke; Pavlović, Milena; Rand, Knut Dagestad; Chernigovskaya, Maria; Pirvandy, Oz; Yaari, Gur; Greiff, Victor & Sandve, Geir Kjetil Ferkingstad. 2023, GigaScience.
https://doi.org/10.1093/gigascience/giad074 (Academic article)
simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods. Kanduri, Chakravarthi; Scheffer, Lonneke; Pavlović, Milena; Rand, Knut Dagestad; Chernigovskaya, Maria; Pirvandy, Oz; Yaari, Gur; Greiff, Victor & Sandve, Geir Kjetil Ferkingstad. 2023, GigaScience.
https://doi.org/10.1093/gigascience/giad074 (Academic article)
T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases. Høye, Eirik; Dagenborg, Vegar Johansen; Kristensen, Annette Torgunrud; Lund-Andersen, Christin; Fretland, Åsmund Avdem; Lorenz, Susanne; Edwin, Bjørn von Gohren; Hovig, Eivind; Fromm, Bastian; Inderberg, Else Marit et al.. 2023, GigaScience.
https://doi.org/10.1093/gigascience/giad032 (Academic article)
T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases. Høye, Eirik; Dagenborg, Vegar Johansen; Kristensen, Annette Torgunrud; Lund-Andersen, Christin; Fretland, Åsmund Avdem; Lorenz, Susanne; Edwin, Bjørn von Gohren; Hovig, Eivind; Fromm, Bastian; Inderberg, Else Marit et al.. 2023, GigaScience.
https://doi.org/10.1093/gigascience/giad032 (Academic article)
The genetic history of Scandinavia from the Roman Iron Age to the present. Rodriguez-Varela, Ricardo; Moore, Kristjan H.S.; Ebenesersdottir, Sunna; Kilinc, Gulsah; Kjellström, Anna; Papmehl-Dufay, Ludvig; Alfsdotter, Clara; Berglund, Birgitta; Alrawi, Loey; Kashuba, Natlija et al.. 2023, Cell.
https://doi.org/10.1016/j.cell.2022.11.024 (Academic article)
The genetic history of Scandinavia from the Roman Iron Age to the present. Rodriguez-Varela, Ricardo; Moore, Kristjan H.S.; Ebenesersdottir, Sunna; Kilinc, Gulsah; Kjellström, Anna; Papmehl-Dufay, Ludvig; Alfsdotter, Clara; Berglund, Birgitta; Alrawi, Loey; Kashuba, Natlija et al.. 2023, Cell.
https://doi.org/10.1016/j.cell.2022.11.024 (Academic article)
The Geriatric Prognostic Index: a clinical prediction model for survival of older diffuse large B-cell lymphoma patients treated with standard immunochemotherapy. Isaksen, Kathrine Thuestad; Galleberg, Renate Berget; Mastroianni, Maria Adele; Rinde, Marit; Rusten, Leiv Sindre; Barzenje, Dlawer Abdulla; Ramslien, Lloyd Frode; Fluge, Øystein; Jordhøy, Marit Slaaen; Meyer, Peter Albert et al.. 2023, Haematologica.
https://doi.org/10.3324/haematol.2022.282289 (Academic article)
The Geriatric Prognostic Index: a clinical prediction model for survival of older diffuse large B-cell lymphoma patients treated with standard immunochemotherapy. Isaksen, Kathrine Thuestad; Galleberg, Renate Berget; Mastroianni, Maria Adele; Rinde, Marit; Rusten, Leiv Sindre; Barzenje, Dlawer Abdulla; Ramslien, Lloyd Frode; Fluge, Øystein; Jordhøy, Marit Slaaen; Meyer, Peter Albert et al.. 2023, Haematologica.
https://doi.org/10.3324/haematol.2022.282289 (Academic article)
Transcriptomic subtyping of malignant peripheral nerve sheath tumours highlights immune signatures, genomic profiles, patient survival and therapeutic targets. Høland, Maren; Berg, Kaja Christine Graue; Eilertsen, Ina Andrassy; Bjerkehagen, Bodil; Kolberg, Matthias; Pedersen, Kjetil Boye; Lingjærde, Ole Christian; Guren, Tormod Kyrre; Mandahl, Nils; van den Berg, Eva et al.. 2023, EBioMedicine.
https://doi.org/10.1016/j.ebiom.2023.104829 (Academic article)
Transcriptomic subtyping of malignant peripheral nerve sheath tumours highlights immune signatures, genomic profiles, patient survival and therapeutic targets. Høland, Maren; Berg, Kaja Christine Graue; Eilertsen, Ina Andrassy; Bjerkehagen, Bodil; Kolberg, Matthias; Pedersen, Kjetil Boye; Lingjærde, Ole Christian; Guren, Tormod Kyrre; Mandahl, Nils; van den Berg, Eva et al.. 2023, EBioMedicine.
https://doi.org/10.1016/j.ebiom.2023.104829 (Academic article)
2022
A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer. Høye, Eirik; Fromm, Bastian; Böttger, Paul H.M.; Domanska, Diana; Kristensen, Annette Torgunrud; Lund-Andersen, Christin; Abrahamsen, Torveig Weum; Fretland, Åsmund Avdem; Dagenborg, Vegar Johansen; Lorenz, Susanne et al.. 2022, NAR Cancer.
https://doi.org/10.1093/narcan/zcab051 (Academic article)
A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer. Høye, Eirik; Fromm, Bastian; Böttger, Paul H.M.; Domanska, Diana; Kristensen, Annette Torgunrud; Lund-Andersen, Christin; Abrahamsen, Torveig Weum; Fretland, Åsmund Avdem; Dagenborg, Vegar Johansen; Lorenz, Susanne et al.. 2022, NAR Cancer.
https://doi.org/10.1093/narcan/zcab051 (Academic article)
A national precision cancer medicine implementation initiative for Norway. Tasken, Kjetil; Russnes, Hege Elisabeth Giercksky; Aas, Eline; Bjørge, Line; Blix, Egil Støre; Ahlquist, Terje C.; Alikhani, Nyosha; Areffard, Mohammad Ali; Bergli, Elise; Edvardsen, Hege et al.. 2022, Nature Medicine.
https://doi.org/10.1038/s41591-022-01777-4 (Letter to the editor)
A national precision cancer medicine implementation initiative for Norway. Tasken, Kjetil; Russnes, Hege Elisabeth Giercksky; Aas, Eline; Bjørge, Line; Blix, Egil Støre; Ahlquist, Terje C.; Alikhani, Nyosha; Areffard, Mohammad Ali; Bergli, Elise; Edvardsen, Hege et al.. 2022, Nature Medicine.
https://doi.org/10.1038/s41591-022-01777-4 (Letter to the editor)
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking. Sandve, Geir Kjetil Ferkingstad & Greiff, Victor. 2022, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btac612 (Letter to the editor)
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking. Sandve, Geir Kjetil Ferkingstad & Greiff, Victor. 2022, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btac612 (Letter to the editor)
Characterization of the T cell receptor repertoire and melanoma tumor microenvironment upon combined treatment with ipilimumab and hTERT vaccination. Ellingsen, Espen Basmo; Bounova, Gergana; Kerzeli, Iliana; Anzar, Irantzu; Simnica, Donjete; Aamdal, Elin; Guren, Tormod Kyrre; Clancy, Trevor; Mezheyeuski, Artur; Inderberg, Else Marit et al.. 2022, Journal of Translational Medicine.
https://doi.org/10.1186/s12967-022-03624-z (Academic article)
Characterization of the T cell receptor repertoire and melanoma tumor microenvironment upon combined treatment with ipilimumab and hTERT vaccination. Ellingsen, Espen Basmo; Bounova, Gergana; Kerzeli, Iliana; Anzar, Irantzu; Simnica, Donjete; Aamdal, Elin; Guren, Tormod Kyrre; Clancy, Trevor; Mezheyeuski, Artur; Inderberg, Else Marit et al.. 2022, Journal of Translational Medicine.
https://doi.org/10.1186/s12967-022-03624-z (Academic article)
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers. Castro Mondragon, Jaime Abraham; Aure, Miriam Ragle; Lingjærde, Ole Christian; Langerød, Anita; Martens, John WM; Børresen-Dale, Anne-Lise; Kristensen, Vessela N. & Mathelier, Anthony. 2022, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkac1143 (Academic article)
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers. Castro Mondragon, Jaime Abraham; Aure, Miriam Ragle; Lingjærde, Ole Christian; Langerød, Anita; Martens, John WM; Børresen-Dale, Anne-Lise; Kristensen, Vessela N. & Mathelier, Anthony. 2022, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkac1143 (Academic article)
Clonal evolution after treatment pressure in multiple myeloma: heterogenous genomic aberrations and transcriptomic convergence. Misund, Kristine; Hofste op Bruinink, Davine; Coward, Eivind; Hoogenboezem, Remco M.; Rustad, Even Holth; Sanders, Mathijs A.; Rye, Morten Beck; Sponaas, Anne-Marit; van der Holt, Bronno; Zweegman, Sonja et al.. 2022, Leukemia.
https://doi.org/10.1038/s41375-022-01597-y (Academic article)
Clonal evolution after treatment pressure in multiple myeloma: heterogenous genomic aberrations and transcriptomic convergence. Misund, Kristine; Hofste op Bruinink, Davine; Coward, Eivind; Hoogenboezem, Remco M.; Rustad, Even Holth; Sanders, Mathijs A.; Rye, Morten Beck; Sponaas, Anne-Marit; van der Holt, Bronno; Zweegman, Sonja et al.. 2022, Leukemia.
https://doi.org/10.1038/s41375-022-01597-y (Academic article)
Clonal evolution in primary breast cancers under sequential epirubicin and docetaxel monotherapy. Venizelos, Andreas; Engebrethsen, Christina; Deng, Wei; Geisler, Jürgen; Geisler, Stephanie; Iversen, Gjertrud Titlestad; Aas, Turid; Aase, Hildegunn Siv; Seyedzadeh, Manouchehr; Steinskog, Eli Sihn Samdal et al.. 2022, Genome Medicine.
https://doi.org/10.1186/s13073-022-01090-2 (Academic article)
Clonal evolution in primary breast cancers under sequential epirubicin and docetaxel monotherapy. Venizelos, Andreas; Engebrethsen, Christina; Deng, Wei; Geisler, Jürgen; Geisler, Stephanie; Iversen, Gjertrud Titlestad; Aas, Turid; Aase, Hildegunn Siv; Seyedzadeh, Manouchehr; Steinskog, Eli Sihn Samdal et al.. 2022, Genome Medicine.
https://doi.org/10.1186/s13073-022-01090-2 (Academic article)
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching. Rognes, Torbjørn; Scheffer, Lonneke; Greiff, Victor & Sandve, Geir Kjetil. 2022, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btac505 (Academic article)
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching. Rognes, Torbjørn; Scheffer, Lonneke; Greiff, Victor & Sandve, Geir Kjetil. 2022, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btac505 (Academic article)
Cooperative induction of receptor tyrosine kinases contributes to adaptive MAPK drug resistance in melanoma through the PI3K pathway. Alver, Tine Norman; Heintz, Karen Marie; Hovig, Eivind & Bøe, Sigurd. 2022, Cancer Reports.
https://doi.org/10.1002/cnr2.1736 (Academic article)
Cooperative induction of receptor tyrosine kinases contributes to adaptive MAPK drug resistance in melanoma through the PI3K pathway. Alver, Tine Norman; Heintz, Karen Marie; Hovig, Eivind & Bøe, Sigurd. 2022, Cancer Reports.
https://doi.org/10.1002/cnr2.1736 (Academic article)
Correction to: Improving public cancer care by implementing precision medicine in Norway: IMPRESS-Norway (Journal of Translational Medicine, (2022), 20, 1, (225), 10.1186/s12967-022-03432-5). Helland, Åslaug; Russnes, Hege Elisabeth Giercksky; Fagereng, Gro Live; Al-Shibli, Khalid Ibrahim; Andersson, Yvonne; Berg, Thomas; Bjørge, Line; Blix, Egil Støre; Bjerkehagen, Bodil; Brabrand, Sigmund et al.. 2022, Journal of Translational Medicine.
https://doi.org/10.1186/s12967-022-03518-0 (Errata)
Correction to: Improving public cancer care by implementing precision medicine in Norway: IMPRESS-Norway (Journal of Translational Medicine, (2022), 20, 1, (225), 10.1186/s12967-022-03432-5). Helland, Åslaug; Russnes, Hege Elisabeth Giercksky; Fagereng, Gro Live; Al-Shibli, Khalid Ibrahim; Andersson, Yvonne; Berg, Thomas; Bjørge, Line; Blix, Egil Støre; Bjerkehagen, Bodil; Brabrand, Sigmund et al.. 2022, Journal of Translational Medicine.
https://doi.org/10.1186/s12967-022-03518-0 (Errata)
Detecting statistical interactions in immune receptor datasets. Minotto, Thomas; Haff, Ingrid Hobæk & Sandve, Geir Kjetil Ferkingstad. 2022, EUT Edizioni Università di Trieste.
(Academic chapter/article/Conference paper)
Detecting statistical interactions in immune receptor datasets. Minotto, Thomas; Haff, Ingrid Hobæk & Sandve, Geir Kjetil Ferkingstad. 2022, EUT Edizioni Università di Trieste.
(Academic chapter/article/Conference paper)
Durable and dynamic hTERT immune responses following vaccination with the long-peptide cancer vaccine UV1: Long-Term follow-up of three phase i clinical trials. Ellingsen, Espen Basmo; Aamdal, Elin; Guren, Tormod Kyrre; Lilleby, Wolfgang; Brunsvig, Paal Fr.; Mangsbo, Sara M; Aamdal, Steinar; Hovig, Eivind; Mensali, Nadia; Gaudernack, Gustav et al.. 2022, Journal for ImmunoTherapy of Cancer (JITC).
https://doi.org/10.1136/jitc-2021-004345 (Academic article)
Durable and dynamic hTERT immune responses following vaccination with the long-peptide cancer vaccine UV1: Long-Term follow-up of three phase i clinical trials. Ellingsen, Espen Basmo; Aamdal, Elin; Guren, Tormod Kyrre; Lilleby, Wolfgang; Brunsvig, Paal Fr.; Mangsbo, Sara M; Aamdal, Steinar; Hovig, Eivind; Mensali, Nadia; Gaudernack, Gustav et al.. 2022, Journal for ImmunoTherapy of Cancer (JITC).
https://doi.org/10.1136/jitc-2021-004345 (Academic article)
Functional precision cancer medicine: drug sensitivity screening enabled by cell culture models. Flobak, Åsmund; Skånland, Sigrid S; Hovig, Eivind; Tasken, Kjetil & Russnes, Hege Elisabeth Giercksky. 2022, TIPS - Trends in Pharmacological Sciences.
https://doi.org/10.1016/j.tips.2022.08.009 (Academic literature review)
Functional precision cancer medicine: drug sensitivity screening enabled by cell culture models. Flobak, Åsmund; Skånland, Sigrid S; Hovig, Eivind; Tasken, Kjetil & Russnes, Hege Elisabeth Giercksky. 2022, TIPS - Trends in Pharmacological Sciences.
https://doi.org/10.1016/j.tips.2022.08.009 (Academic literature review)
Genetic Characterization in High-Risk Individuals from a Low-Resource City of Peru. Zavaleta, Elizabeth; Solis, Nelly; Palacios, Maria Isabel; Zevallos-Escobar, Liz Elva; Corales, Edison Vasquez; Bazo-Alvarez, Juan Carlos; Dominguez-Barrera, Constantino; Campos, Anthony; Wernhoff, Patrik; Ekstrøm, Per Olaf et al.. 2022, Cancers.
https://doi.org/10.3390/cancers14225603 (Academic article)
Genetic Characterization in High-Risk Individuals from a Low-Resource City of Peru. Zavaleta, Elizabeth; Solis, Nelly; Palacios, Maria Isabel; Zevallos-Escobar, Liz Elva; Corales, Edison Vasquez; Bazo-Alvarez, Juan Carlos; Dominguez-Barrera, Constantino; Campos, Anthony; Wernhoff, Patrik; Ekstrøm, Per Olaf et al.. 2022, Cancers.
https://doi.org/10.3390/cancers14225603 (Academic article)
Improving public cancer care by implementing precision medicine in Norway: IMPRESS-Norway. Helland, Åslaug; Russnes, Hege Elisabeth Giercksky; Fagereng, Gro Live; Al-Shibli, Khalid Ibrahim; Andersson, Yvonne; Berg, Thomas; Bjørge, Line; Blix, Egil Støre; Bjerkehagen, Bodil; Brabrand, Sigmund et al.. 2022, Journal of Translational Medicine.
https://doi.org/10.1186/s12967-022-03432-5 (Article in business/trade/industry journal)
Improving public cancer care by implementing precision medicine in Norway: IMPRESS-Norway. Helland, Åslaug; Russnes, Hege Elisabeth Giercksky; Fagereng, Gro Live; Al-Shibli, Khalid Ibrahim; Andersson, Yvonne; Berg, Thomas; Bjørge, Line; Blix, Egil Støre; Bjerkehagen, Bodil; Brabrand, Sigmund et al.. 2022, Journal of Translational Medicine.
https://doi.org/10.1186/s12967-022-03432-5 (Article in business/trade/industry journal)
In silico proof of principle of machine learning-based antibody design at unconstrained scale. Akbar, Rahmad; Robert, Philippe Paul Auguste; Weber, Cédric R.; Widrich, Michael; Frank, Robert; Pavlovic, Milena; Scheffer, Lonneke; Chernigovskaia, Maria; Snapkow, Igor; Slabodkin, Andrei et al.. 2022, mAbs.
https://doi.org/10.1080/19420862.2022.2031482 (Academic article)
In silico proof of principle of machine learning-based antibody design at unconstrained scale. Akbar, Rahmad; Robert, Philippe Paul Auguste; Weber, Cédric R.; Widrich, Michael; Frank, Robert; Pavlovic, Milena; Scheffer, Lonneke; Chernigovskaia, Maria; Snapkow, Igor; Slabodkin, Andrei et al.. 2022, mAbs.
https://doi.org/10.1080/19420862.2022.2031482 (Academic article)
KAGE: fast alignment-free graph-based genotyping of SNPs and short indels. Grytten, Ivar; Rand, Knut Dagestad & Sandve, Geir Kjetil Ferkingstad. 2022, Genome Biology.
https://doi.org/10.1186/s13059-022-02771-2 (Academic article)
KAGE: fast alignment-free graph-based genotyping of SNPs and short indels. Grytten, Ivar; Rand, Knut Dagestad & Sandve, Geir Kjetil Ferkingstad. 2022, Genome Biology.
https://doi.org/10.1186/s13059-022-02771-2 (Academic article)
Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures. Olstad, Emilie Willoch; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Lyle, Robert & Gervin, Kristina. 2022, Clinical Epigenetics.
https://doi.org/10.1186/s13148-022-01299-3 (Academic article)
Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures. Olstad, Emilie Willoch; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Lyle, Robert & Gervin, Kristina. 2022, Clinical Epigenetics.
https://doi.org/10.1186/s13148-022-01299-3 (Academic article)
MirGeneDB 2.1: toward a complete sampling of all major animal phyla. Fromm, Bastian; Høye, Eirik; Domanska, Diana; Zhong, Xiangfu; Aparicio-Puerta, Ernesto; Ovchinnikov, Vladimir; Umu, Sinan Ugur; Chabot, Peter J; Kang, Wenjing; Aslanzadeh, Morteza et al.. 2022, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkab1101 (Academic article)
MirGeneDB 2.1: toward a complete sampling of all major animal phyla. Fromm, Bastian; Høye, Eirik; Domanska, Diana; Zhong, Xiangfu; Aparicio-Puerta, Ernesto; Ovchinnikov, Vladimir; Umu, Sinan Ugur; Chabot, Peter J; Kang, Wenjing; Aslanzadeh, Morteza et al.. 2022, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkab1101 (Academic article)
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions. Rossini, Roberto; Kumar, Vipin; Mathelier, Anthony; Rognes, Torbjørn & Paulsen, Jonas. 2022, Genome Biology.
https://doi.org/10.1186/s13059-022-02815-7 (Academic article)
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions. Rossini, Roberto; Kumar, Vipin; Mathelier, Anthony; Rognes, Torbjørn & Paulsen, Jonas. 2022, Genome Biology.
https://doi.org/10.1186/s13059-022-02815-7 (Academic article)
Mutational analysis and protein profiling predict drug sensitivity in multiple myeloma cell lines. Giliberto, Mariaserena; Miranda Santana, Leonardo; Holien, Toril; Misund, Kristine; Nakken, Sigve; Vodak, Daniel; Hovig, Eivind; Meza, Leonardo Zepeda; Coward, Eivind; Waage, Anders et al.. 2022, Frontiers in Oncology.
https://doi.org/10.3389/fonc.2022.1040730 (Academic article)
Mutational analysis and protein profiling predict drug sensitivity in multiple myeloma cell lines. Giliberto, Mariaserena; Miranda Santana, Leonardo; Holien, Toril; Misund, Kristine; Nakken, Sigve; Vodak, Daniel; Hovig, Eivind; Meza, Leonardo Zepeda; Coward, Eivind; Waage, Anders et al.. 2022, Frontiers in Oncology.
https://doi.org/10.3389/fonc.2022.1040730 (Academic article)
NRF2 drives an oxidative stress response predictive of breast cancer. Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen; Skotheim, Rolf I.; Andersen, Sonja Benedikte; Zwiggelaar, Rosalie Theda Margien; Steigedal, Tonje S. et al.. 2022, Free Radical Biology & Medicine.
https://doi.org/10.1016/j.freeradbiomed.2022.03.029 (Academic article)
NRF2 drives an oxidative stress response predictive of breast cancer. Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen; Skotheim, Rolf I.; Andersen, Sonja Benedikte; Zwiggelaar, Rosalie Theda Margien; Steigedal, Tonje S. et al.. 2022, Free Radical Biology & Medicine.
https://doi.org/10.1016/j.freeradbiomed.2022.03.029 (Academic article)
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification. Kanduri, Chakravarthi; Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Chernigovskaia, Maria; Greiff, Victor & Sandve, Geir Kjetil Ferkingstad. 2022, GigaScience.
https://doi.org/10.1093/gigascience/giac046 (Academic article)
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification. Kanduri, Chakravarthi; Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Chernigovskaia, Maria; Greiff, Victor & Sandve, Geir Kjetil Ferkingstad. 2022, GigaScience.
https://doi.org/10.1093/gigascience/giac046 (Academic article)
Prognostic Significance of the Loss of Heterozygosity of KRAS in Early-Stage Lung Adenocarcinoma. Khadse, Anand; Haakensen, Vilde Drageset; Silwal-Pandit, Laxmi; Hamfjord, Julian; Micke, Patrick; Botling, Johan; Brustugun, Odd Terje; Lingjærde, Ole Christian; Helland, Åslaug & Kure, Elin Wenche Hegland. 2022, Frontiers in Oncology.
https://doi.org/10.3389/fonc.2022.873532 (Academic article)
Prognostic Significance of the Loss of Heterozygosity of KRAS in Early-Stage Lung Adenocarcinoma. Khadse, Anand; Haakensen, Vilde Drageset; Silwal-Pandit, Laxmi; Hamfjord, Julian; Micke, Patrick; Botling, Johan; Brustugun, Odd Terje; Lingjærde, Ole Christian; Helland, Åslaug & Kure, Elin Wenche Hegland. 2022, Frontiers in Oncology.
https://doi.org/10.3389/fonc.2022.873532 (Academic article)
Proteome Analysis of Pancreatic Tumors Implicates Extracellular Matrix in Patient Outcome. Silwal-Pandit, Laxmi; Stålberg, Stina Margrethe; Johansson, Henrik J.; Mermelekas, Georgios; Lothe, Inger Marie Bowitz; Skrede, Martina Landschoof; Dalsgaard, Astrid Marie; Nebdal, Daniel J.H.; Helland, Åslaug; Lingjærde, Ole Christian et al.. 2022, Cancer Research Communications.
https://doi.org/10.1158/2767-9764.CRC-21-0100 (Academic article)
Proteome Analysis of Pancreatic Tumors Implicates Extracellular Matrix in Patient Outcome. Silwal-Pandit, Laxmi; Stålberg, Stina Margrethe; Johansson, Henrik J.; Mermelekas, Georgios; Lothe, Inger Marie Bowitz; Skrede, Martina Landschoof; Dalsgaard, Astrid Marie; Nebdal, Daniel J.H.; Helland, Åslaug; Lingjærde, Ole Christian et al.. 2022, Cancer Research Communications.
https://doi.org/10.1158/2767-9764.CRC-21-0100 (Academic article)
Reference-based comparison of adaptive immune receptor repertoires. Weber, Cédric R.; Rubio, Teresa; Wang, Longlong; Zhang, Wei; Robert, Philippe Paul Auguste; Akbar, Rahmad; Snapkov, Igor; Wu, Jinghua; Kuijjer, Marieke; Tarazona, Sonia et al.. 2022, Cell Reports Methods.
https://doi.org/10.1016/j.crmeth.2022.100269 (Academic article)
Reference-based comparison of adaptive immune receptor repertoires. Weber, Cédric R.; Rubio, Teresa; Wang, Longlong; Zhang, Wei; Robert, Philippe Paul Auguste; Akbar, Rahmad; Snapkov, Igor; Wu, Jinghua; Kuijjer, Marieke; Tarazona, Sonia et al.. 2022, Cell Reports Methods.
https://doi.org/10.1016/j.crmeth.2022.100269 (Academic article)
screenwerk: a modular tool for the design and analysis of drug combination screens. Hanes, Robert; Ayuda-Duran, Maria del Pilar; Rønneberg, Leiv; Nakken, Sigve; Hovig, Eivind; Zucknick, Manuela & Enserink, Jorrit Martijn. 2022, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btac840 (Academic article)
screenwerk: a modular tool for the design and analysis of drug combination screens. Hanes, Robert; Ayuda-Duran, Maria del Pilar; Rønneberg, Leiv; Nakken, Sigve; Hovig, Eivind; Zucknick, Manuela & Enserink, Jorrit Martijn. 2022, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btac840 (Academic article)
Subtype and cell type specific expression of lncRNAs provide insight into breast cancer. Bjørklund, Sunniva; Aure, Miriam Ragle; Häkkinen, Jari; Vallon-Christersson, Johan; Kumar, Surendra; Bull Evensen, Katrine; Fleischer, Thomas; Tost, Jörg; Sahlberg, Kristine Kleivi; Mathelier, Anthony et al.. 2022, Communications Biology.
https://doi.org/10.1038/s42003-022-03559-7 (Academic article)
Subtype and cell type specific expression of lncRNAs provide insight into breast cancer. Bjørklund, Sunniva; Aure, Miriam Ragle; Häkkinen, Jari; Vallon-Christersson, Johan; Kumar, Surendra; Bull Evensen, Katrine; Fleischer, Thomas; Tost, Jörg; Sahlberg, Kristine Kleivi; Mathelier, Anthony et al.. 2022, Communications Biology.
https://doi.org/10.1038/s42003-022-03559-7 (Academic article)
TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences. Dahal-Koirala, Shiva; Balaban, Gabriel; Neumann, Ralf Stefan; Scheffer, Lonneke; Lundin, Knut; Greiff, Victor; Sollid, Ludvig Magne; Qiao, Shuo-Wang & Sandve, Geir Kjetil Ferkingstad. 2022, Briefings in Bioinformatics.
https://doi.org/10.1093/bib/bbab566 (Academic article)
TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences. Dahal-Koirala, Shiva; Balaban, Gabriel; Neumann, Ralf Stefan; Scheffer, Lonneke; Lundin, Knut; Greiff, Victor; Sollid, Ludvig Magne; Qiao, Shuo-Wang & Sandve, Geir Kjetil Ferkingstad. 2022, Briefings in Bioinformatics.
https://doi.org/10.1093/bib/bbab566 (Academic article)
The Norwegian Mother, Father, and Child cohort study (MoBa) genotyping data resource: MoBaPsychGen pipeline v.1. Corfield, Elizabeth Claire; Frei, Oleksandr; Shadrin, Alexey; Rahman, Zillur; Lin, Aihua; Athanasiu, Lavinia; Akdeniz, Bayram Cevdet; Hannigan, Laurie; Wootton, Robyn; Austerberry, Chloe et al.. 2022, Cold Spring Harbor Laboratory Press (CSHL).
(Report)
The Norwegian Mother, Father, and Child cohort study (MoBa) genotyping data resource: MoBaPsychGen pipeline v.1. Corfield, Elizabeth Claire; Frei, Oleksandr; Shadrin, Alexey; Rahman, Zillur; Lin, Aihua; Athanasiu, Lavinia; Akdeniz, Bayram Cevdet; Hannigan, Laurie; Wootton, Robyn; Austerberry, Chloe et al.. 2022, Cold Spring Harbor Laboratory Press (CSHL).
(Report)
The population genomic legacy of the second plague pandemic. Gopalakrishnan, Shyam; Ebenesersdottir, S.Sunna; Lundstrøm, Inge K.C.; Turner-Walker, Gordon; Moore, Kristjan H.S.; Luisi, Pierre; Magaryan, Ashot; Martin, Michael David; Ellegaard, Martin Rene; Magnusson, Olafur T. et al.. 2022, Current Biology.
https://doi.org/10.1016/j.cub.2022.09.023 (Academic article)
The population genomic legacy of the second plague pandemic. Gopalakrishnan, Shyam; Ebenesersdottir, S.Sunna; Lundstrøm, Inge K.C.; Turner-Walker, Gordon; Moore, Kristjan H.S.; Luisi, Pierre; Magaryan, Ashot; Martin, Michael David; Ellegaard, Martin Rene; Magnusson, Olafur T. et al.. 2022, Current Biology.
https://doi.org/10.1016/j.cub.2022.09.023 (Academic article)
The role of pressure and defects in the wurtzite to rock salt transition in cadmium selenide. Lervik, Anders; Svenum, Ingeborg-Helene; Wang, Zhaohui; Cabriolu, Raffaela; Riccardi, Enrico; Andersson, Stefan & van Erp, Titus Sebastiaan. 2022, Physical Chemistry, Chemical Physics - PCCP.
https://doi.org/10.1039/d1cp05051f (Academic article)
The role of pressure and defects in the wurtzite to rock salt transition in cadmium selenide. Lervik, Anders; Svenum, Ingeborg-Helene; Wang, Zhaohui; Cabriolu, Raffaela; Riccardi, Enrico; Andersson, Stefan & van Erp, Titus Sebastiaan. 2022, Physical Chemistry, Chemical Physics - PCCP.
https://doi.org/10.1039/d1cp05051f (Academic article)
Thin film breakage in oil–in–water emulsions, a multidisciplinary study. Aarøen, Ola; Riccardi, Enrico; van Erp, Titus Sebastiaan & Sletmoen, Marit. 2022, Colloids and Surfaces A: Physicochemical and Engineering Aspects.
https://doi.org/10.1016/j.colsurfa.2021.127808 (Academic article)
Thin film breakage in oil–in–water emulsions, a multidisciplinary study. Aarøen, Ola; Riccardi, Enrico; van Erp, Titus Sebastiaan & Sletmoen, Marit. 2022, Colloids and Surfaces A: Physicochemical and Engineering Aspects.
https://doi.org/10.1016/j.colsurfa.2021.127808 (Academic article)
Unconstrained generation of synthetic antibody–antigen structures to guide machine learning methodology for antibody specificity prediction. Robert, Philippe Paul Auguste; Akbar, Rahmad; Frank, Robert; Pavlović, Milena; Widrich, Michael; Snapkov, Igor; Slabodkin, Andrei; Chernigovskaya, Maria; Scheffer, Lonneke; Smorodina, Eva et al.. 2022, Nature Computational Science.
https://doi.org/10.1038/s43588-022-00372-4 (Academic article)
Unconstrained generation of synthetic antibody–antigen structures to guide machine learning methodology for antibody specificity prediction. Robert, Philippe Paul Auguste; Akbar, Rahmad; Frank, Robert; Pavlović, Milena; Widrich, Michael; Snapkov, Igor; Slabodkin, Andrei; Chernigovskaya, Maria; Scheffer, Lonneke; Smorodina, Eva et al.. 2022, Nature Computational Science.
https://doi.org/10.1038/s43588-022-00372-4 (Academic article)
Which single-cell analysis tool is best? Scientists offer advice. Dance, Amber; Sandve, Geir Kjetil Ferkingstad; Morris, Samantha; Saez-Rodriguez, Julio; Heyn, Holger & Levin, Joshua. 2022, Nature.
https://doi.org/10.1038/d41586-022-04426-5 (Interview journal)
Which single-cell analysis tool is best? Scientists offer advice. Dance, Amber; Sandve, Geir Kjetil Ferkingstad; Morris, Samantha; Saez-Rodriguez, Julio; Heyn, Holger & Levin, Joshua. 2022, Nature.
https://doi.org/10.1038/d41586-022-04426-5 (Interview journal)
2021
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding. Akbar, Rahmad; Robert, Philippe Paul Auguste; Pavlović, Milena; Jeliazkov, Jeliazko R.; Snapkov, Igor; Slabodkin, Andrei; Weber, Cédric R.; Scheffer, Lonneke; Miho, Enkelejda; Haff, Ingrid Hobæk et al.. 2021, Cell reports.
https://doi.org/10.1016/j.celrep.2021.108856 (Academic article)
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding. Akbar, Rahmad; Robert, Philippe Paul Auguste; Pavlović, Milena; Jeliazkov, Jeliazko R.; Snapkov, Igor; Slabodkin, Andrei; Weber, Cédric R.; Scheffer, Lonneke; Miho, Enkelejda; Haff, Ingrid Hobæk et al.. 2021, Cell reports.
https://doi.org/10.1016/j.celrep.2021.108856 (Academic article)
A Systemic Protein Deviation Score Linked to PD-1+ CD8+ T Cell Expansion That Predicts Overall Survival in Diffuse Large B Cell Lymphoma. Ask, Eivind Heggernes; Tschan-Plessl, Astrid; Gjerdingen, Thea Johanne; Hoel, Hanna Julie; Sætersmoen, Michelle Lu; Wiiger, Merete Thune; Olweus, Johanna; Wahlin, Björn E.; Lingjærde, Ole Christian; Horowitz, Amir et al.. 2021, Med.
https://doi.org/10.1016/j.medj.2020.10.006 (Academic article)
A Systemic Protein Deviation Score Linked to PD-1+ CD8+ T Cell Expansion That Predicts Overall Survival in Diffuse Large B Cell Lymphoma. Ask, Eivind Heggernes; Tschan-Plessl, Astrid; Gjerdingen, Thea Johanne; Hoel, Hanna Julie; Sætersmoen, Michelle Lu; Wiiger, Merete Thune; Olweus, Johanna; Wahlin, Björn E.; Lingjærde, Ole Christian; Horowitz, Amir et al.. 2021, Med.
https://doi.org/10.1016/j.medj.2020.10.006 (Academic article)
Analysis in the Prospective Lynch Syndrome Database identifies sarcoma as part of the Lynch syndrome tumor spectrum. Dominguez-Valentin, Mev; Sampson, Julian R.; Møller, Pål; Seppälä, Toni T.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2021, International Journal of Cancer.
https://doi.org/10.1002/ijc.33214 (Letter to the editor)
Analysis in the Prospective Lynch Syndrome Database identifies sarcoma as part of the Lynch syndrome tumor spectrum. Dominguez-Valentin, Mev; Sampson, Julian R.; Møller, Pål; Seppälä, Toni T.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2021, International Journal of Cancer.
https://doi.org/10.1002/ijc.33214 (Letter to the editor)
Biophysically detailed forward modeling of the neural origin of EEG and MEG signals. Næss, Solveig; Halnes, Geir; Hagen, Espen; Hagler, Donald J.; Dale, Anders M.; Einevoll, Gaute & Ness, Torbjørn Vefferstad. 2021, NeuroImage.
https://doi.org/10.1016/j.neuroimage.2020.117467 (Academic article)
Biophysically detailed forward modeling of the neural origin of EEG and MEG signals. Næss, Solveig; Halnes, Geir; Hagen, Espen; Hagler, Donald J.; Dale, Anders M.; Einevoll, Gaute & Ness, Torbjørn Vefferstad. 2021, NeuroImage.
https://doi.org/10.1016/j.neuroimage.2020.117467 (Academic article)
Breast cancer metastasis: immune profiling of lymph nodes reveals exhaustion of effector T cells and immunosuppression. Rye, Inga Hansine; Huse, Kanutte; Josefsson, Sarah Elisabet; Kildal, Wanja; Danielsen, Håvard Emil Greger; Schlichting, Ellen; Garred, Øystein; Riis, Margit; Lingjærde, Ole Christian; Myklebust, June Helen et al.. 2021, Molecular Oncology.
https://doi.org/10.1002/1878-0261.13047 (Academic article)
Breast cancer metastasis: immune profiling of lymph nodes reveals exhaustion of effector T cells and immunosuppression. Rye, Inga Hansine; Huse, Kanutte; Josefsson, Sarah Elisabet; Kildal, Wanja; Danielsen, Håvard Emil Greger; Schlichting, Ellen; Garred, Øystein; Riis, Margit; Lingjærde, Ole Christian; Myklebust, June Helen et al.. 2021, Molecular Oncology.
https://doi.org/10.1002/1878-0261.13047 (Academic article)
Cancer Predisposition Sequencing Reporter (CPSR): A flexible variant report engine for high-throughput germline screening in cancer. Nakken, Sigve; Saveliev, Vladislav; Hofmann, Oliver; Møller, Pål; Myklebost, Ola & Hovig, Eivind. 2021, International Journal of Cancer.
https://doi.org/10.1002/ijc.33749 (Academic article)
Cancer Predisposition Sequencing Reporter (CPSR): A flexible variant report engine for high-throughput germline screening in cancer. Nakken, Sigve; Saveliev, Vladislav; Hofmann, Oliver; Møller, Pål; Myklebost, Ola & Hovig, Eivind. 2021, International Journal of Cancer.
https://doi.org/10.1002/ijc.33749 (Academic article)
Chemistrees: Data-Driven Identification of Reaction Pathways via Machine Learning. Roet, Sander; Daub, Christopher David & Riccardi, Enrico. 2021, Journal of Chemical Theory and Computation.
https://doi.org/10.1021/acs.jctc.1c00458 (Academic article)
Chemistrees: Data-Driven Identification of Reaction Pathways via Machine Learning. Roet, Sander; Daub, Christopher David & Riccardi, Enrico. 2021, Journal of Chemical Theory and Computation.
https://doi.org/10.1021/acs.jctc.1c00458 (Academic article)
Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB. Lemma, Roza Berhanu; Ledsaak, Marit; Fuglerud, Bettina Maria; Sandve, Geir Kjetil; Eskeland, Ragnhild & Gabrielsen, Odd Stokke. 2021, Scientific Reports.
https://doi.org/10.1038/s41598-021-88516-w (Academic article)
Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB. Lemma, Roza Berhanu; Ledsaak, Marit; Fuglerud, Bettina Maria; Sandve, Geir Kjetil; Eskeland, Ragnhild & Gabrielsen, Odd Stokke. 2021, Scientific Reports.
https://doi.org/10.1038/s41598-021-88516-w (Academic article)
Clinicopathological factors associated with tumour-specific mutation detection in plasma of patients with RAS-mutated or BRAF-mutated metastatic colorectal cancer. Hamfjord, Julian; Guren, Tormod Kyrre; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Dajani, Olav; Lingjærde, Ole Christian; Tveit, Magne Kjell; Pallisgaard, Niels; Spindler, Karen-Lise Garm et al.. 2021, International Journal of Cancer.
https://doi.org/10.1002/ijc.33672 (Academic article)
Clinicopathological factors associated with tumour-specific mutation detection in plasma of patients with RAS-mutated or BRAF-mutated metastatic colorectal cancer. Hamfjord, Julian; Guren, Tormod Kyrre; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Dajani, Olav; Lingjærde, Ole Christian; Tveit, Magne Kjell; Pallisgaard, Niels; Spindler, Karen-Lise Garm et al.. 2021, International Journal of Cancer.
https://doi.org/10.1002/ijc.33672 (Academic article)
Combining a universal telomerase based cancer vaccine with ipilimumab in patients with metastatic melanoma - Five-year follow up of a phase I/IIa trial. Aamdal, Elin; Inderberg, Else Marit ; Ellingsen, Espen Basmo; Rasch, Wenche; Brunsvig, Paal Fr.; Aamdal, Steinar; Heintz, Karen Marie; Vodák, Daniel; Nakken, Sigve; Hovig, Eivind et al.. 2021, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2021.663865 (Academic article)
Combining a universal telomerase based cancer vaccine with ipilimumab in patients with metastatic melanoma - Five-year follow up of a phase I/IIa trial. Aamdal, Elin; Inderberg, Else Marit ; Ellingsen, Espen Basmo; Rasch, Wenche; Brunsvig, Paal Fr.; Aamdal, Steinar; Heintz, Karen Marie; Vodák, Daniel; Nakken, Sigve; Hovig, Eivind et al.. 2021, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2021.663865 (Academic article)
Comprehensive Analysis of CDR3 Sequences in Gluten-Specific T-Cell Receptors Reveals a Dominant R-Motif and Several New Minor Motifs. Dahal-Koirala, Shiva; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Christophersen, Asbjørn; Lundin, Knut E. A.; Sandve, Geir Kjetil; Qiao, Shuo-Wang & Sollid, Ludvig M.. 2021, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2021.639672 (Academic article)
Comprehensive Analysis of CDR3 Sequences in Gluten-Specific T-Cell Receptors Reveals a Dominant R-Motif and Several New Minor Motifs. Dahal-Koirala, Shiva; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Christophersen, Asbjørn; Lundin, Knut E. A.; Sandve, Geir Kjetil; Qiao, Shuo-Wang & Sollid, Ludvig M.. 2021, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2021.639672 (Academic article)
Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq. Yao, Ying; Wyrozemski, Lukasz Adam; Lundin, Knut; Sandve, Geir Kjetil Ferkingstad & Qiao, Shuo Wang. 2021, PLOS ONE.
https://doi.org/10.1371/journal.pone.0258029 (Academic article)
Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq. Yao, Ying; Wyrozemski, Lukasz Adam; Lundin, Knut; Sandve, Geir Kjetil Ferkingstad & Qiao, Shuo Wang. 2021, PLOS ONE.
https://doi.org/10.1371/journal.pone.0258029 (Academic article)
Editorial: Genomic Colocalization and Enrichment Analyses. Kanduri, Chakravarthi; Sandve, Geir Kjetil Ferkingstad; Hovig, Eivind; De, Subhajyoti & Layer, Ryan. 2021, Frontiers in Genetics.
https://doi.org/10.3389/fgene.2020.617876 (Editoral)
Editorial: Genomic Colocalization and Enrichment Analyses. Kanduri, Chakravarthi; Sandve, Geir Kjetil Ferkingstad; Hovig, Eivind; De, Subhajyoti & Layer, Ryan. 2021, Frontiers in Genetics.
https://doi.org/10.3389/fgene.2020.617876 (Editoral)
Erratum: The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID (NAR Cancer (2020) 2:3 (zcaa019) DOI: 10.1093/narcan/zcaa019). Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan et al.. 2021, NAR Cancer.
https://doi.org/10.1093/NARCAN/ZCAA045 (Errata)
Erratum: The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID (NAR Cancer (2020) 2:3 (zcaa019) DOI: 10.1093/narcan/zcaa019). Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan et al.. 2021, NAR Cancer.
https://doi.org/10.1093/NARCAN/ZCAA045 (Errata)
Exploring the effects of approach velocity on depletion force and coalescence in oil-in-water emulsions. Aarøen, Ola; Riccardi, Enrico & Sletmoen, Marit. 2021, RSC Advances.
https://doi.org/10.1039/d1ra00661d (Academic article)
Exploring the effects of approach velocity on depletion force and coalescence in oil-in-water emulsions. Aarøen, Ola; Riccardi, Enrico & Sletmoen, Marit. 2021, RSC Advances.
https://doi.org/10.1039/d1ra00661d (Academic article)
Exploring the role of the multiple sclerosis susceptibility gene CLEC16A in T cells. Eriksson, Anna Maria; Leikfoss, Ingvild Sørum; Abrahamsen, Greger; Gjerstad, Vibeke Sundvold; Mesel Isom, Martine; Keshari, Pankaj; Rognes, Torbjørn; Landsverk, Ole J. B.; Bos, Steffan Daniel; Harbo, Hanne Flinstad et al.. 2021, Scandinavian Journal of Immunology.
https://doi.org/10.1111/sji.13050 (Academic article)
Exploring the role of the multiple sclerosis susceptibility gene CLEC16A in T cells. Eriksson, Anna Maria; Leikfoss, Ingvild Sørum; Abrahamsen, Greger; Gjerstad, Vibeke Sundvold; Mesel Isom, Martine; Keshari, Pankaj; Rognes, Torbjørn; Landsverk, Ole J. B.; Bos, Steffan Daniel; Harbo, Hanne Flinstad et al.. 2021, Scandinavian Journal of Immunology.
https://doi.org/10.1111/sji.13050 (Academic article)
Individualized VDJ recombination predisposes the available Ig sequence space. Slabodkin, Andrei; Chernigovskaia, Maria; Mikocziova, Ivana; Akbar, Rahmad; Scheffer, Lonneke; Pavlović, Milena; Bashour, Habib; Snapkov, Igor; Mehta, Brij Bhushan; Weber, Cédric R. et al.. 2021, Genome Research.
https://doi.org/10.1101/gr.275373.121 (Academic article)
Individualized VDJ recombination predisposes the available Ig sequence space. Slabodkin, Andrei; Chernigovskaia, Maria; Mikocziova, Ivana; Akbar, Rahmad; Scheffer, Lonneke; Pavlović, Milena; Bashour, Habib; Snapkov, Igor; Mehta, Brij Bhushan; Weber, Cédric R. et al.. 2021, Genome Research.
https://doi.org/10.1101/gr.275373.121 (Academic article)
miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer. Ben-Elazar, Shay; Aure, Miriam Ragle; Jonsdottir, Kristin; Leivonen, Suvi-Katri; Kristensen, Vessela N.; Janssen, Emiel; Sahlberg, Kristine Kleivi; Lingjærde, Ole Christian & Yakhini, Zohar. 2021, PLoS Computational Biology.
https://doi.org/10.1371/JOURNAL.PCBI.1008608 (Academic article)
miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer. Ben-Elazar, Shay; Aure, Miriam Ragle; Jonsdottir, Kristin; Leivonen, Suvi-Katri; Kristensen, Vessela N.; Janssen, Emiel; Sahlberg, Kristine Kleivi; Lingjærde, Ole Christian & Yakhini, Zohar. 2021, PLoS Computational Biology.
https://doi.org/10.1371/JOURNAL.PCBI.1008608 (Academic article)
No difference in penetrance between truncating and missense/aberrant splicing pathogenic variants in mlh1 and msh2: A prospective lynch syndrome database study. Dominguez-Valentin, Mev; Plazzer, John-Paul; Sampson, Julian R.; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone; Bernstein, Inge; Capella, Gabriel; Balaguer, Francesc et al.. 2021, Journal of Clinical Medicine.
https://doi.org/10.3390/jcm10132856 (Academic article)
No difference in penetrance between truncating and missense/aberrant splicing pathogenic variants in mlh1 and msh2: A prospective lynch syndrome database study. Dominguez-Valentin, Mev; Plazzer, John-Paul; Sampson, Julian R.; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone; Bernstein, Inge; Capella, Gabriel; Balaguer, Francesc et al.. 2021, Journal of Clinical Medicine.
https://doi.org/10.3390/jcm10132856 (Academic article)
Permeation Rates of Oxygen through a Lipid Bilayer Using Replica Exchange Transition Interface Sampling. Riccardi, Enrico; Krämer, Andreas; van Erp, Titus Sebastiaan & Ghysels, An. 2021, Journal of Physical Chemistry B.
https://doi.org/10.1021/acs.jpcb.0c09947 (Academic article)
Permeation Rates of Oxygen through a Lipid Bilayer Using Replica Exchange Transition Interface Sampling. Riccardi, Enrico; Krämer, Andreas; van Erp, Titus Sebastiaan & Ghysels, An. 2021, Journal of Physical Chemistry B.
https://doi.org/10.1021/acs.jpcb.0c09947 (Academic article)
Probing the Putative Role of KATP Channels and Biological Variability in a Mathematical Model of Chondrocyte Electrophysiology. Fischer-Holzhausen, Sophie; Yamamoto, Kei; Fjeldstad, Maria Perona & Maleckar, Mary Margot Catherine. 2021, Bioelectricity.
https://doi.org/10.1089/bioe.2021.0034 (Academic article)
Probing the Putative Role of KATP Channels and Biological Variability in a Mathematical Model of Chondrocyte Electrophysiology. Fischer-Holzhausen, Sophie; Yamamoto, Kei; Fjeldstad, Maria Perona & Maleckar, Mary Margot Catherine. 2021, Bioelectricity.
https://doi.org/10.1089/bioe.2021.0034 (Academic article)
Protein signature predicts response to neoadjuvant treatment with chemotherapy and bevacizumab in HER2-negative breast cancers. Haugen, Mads Haugland; Lingjærde, Ole Christian; Hedenfalk, Ingrid; Garred, Øystein; Borgen, Elin; Loman, Niklas; Hatschek, Thomas; Børresen-Dale, Anne-Lise; Naume, Bjørn; Mills, Gordon B. et al.. 2021, JCO Precision Oncology (JCO PO).
https://doi.org/10.1200/PO.20.00086 (Academic article)
Protein signature predicts response to neoadjuvant treatment with chemotherapy and bevacizumab in HER2-negative breast cancers. Haugen, Mads Haugland; Lingjærde, Ole Christian; Hedenfalk, Ingrid; Garred, Øystein; Borgen, Elin; Loman, Niklas; Hatschek, Thomas; Børresen-Dale, Anne-Lise; Naume, Bjørn; Mills, Gordon B. et al.. 2021, JCO Precision Oncology (JCO PO).
https://doi.org/10.1200/PO.20.00086 (Academic article)
Recommendations for the FAIRification of genomic track metadata. Gundersen, Sveinung; Boddu, Sanjay; Capella-Gutierrez, Salvador; Drabløs, Finn; Fernández, José M.; Kompova, Radmila; Taylor, Kieron; Titov, Dmytro; Zerbino, Daniel & Hovig, Eivind. 2021, F1000 Research.
https://doi.org/10.12688/f1000research.28449.1 (Academic article)
Recommendations for the FAIRification of genomic track metadata. Gundersen, Sveinung; Boddu, Sanjay; Capella-Gutierrez, Salvador; Drabløs, Finn; Fernández, José M.; Kompova, Radmila; Taylor, Kieron; Titov, Dmytro; Zerbino, Daniel & Hovig, Eivind. 2021, F1000 Research.
https://doi.org/10.12688/f1000research.28449.1 (Academic article)
Reduced metagenome sequencing for strain-resolution taxonomic profiles. Snipen, Lars; Angell, Inga-Leena; Rognes, Torbjørn & Rudi, Knut. 2021, Microbiome.
https://doi.org/10.1186/s40168-021-01019-8 (Academic article)
Reduced metagenome sequencing for strain-resolution taxonomic profiles. Snipen, Lars; Angell, Inga-Leena; Rognes, Torbjørn & Rudi, Knut. 2021, Microbiome.
https://doi.org/10.1186/s40168-021-01019-8 (Academic article)
Sample preparation approach influences pam50 risk of recurrence score in early breast cancer. Lien, Tonje Gulbrandsen; Ohnstad, Hege Oma; Lingjærde, Ole Christian; Vallon-Christersson, Johan; Aaserud, Marit; Sveli, My Anh Tu; Borg, Åke; Garred, Øystein; Borgen, Elin; Naume, Bjørn et al.. 2021, Cancers.
https://doi.org/10.3390/cancers13236118 (Academic article)
Sample preparation approach influences pam50 risk of recurrence score in early breast cancer. Lien, Tonje Gulbrandsen; Ohnstad, Hege Oma; Lingjærde, Ole Christian; Vallon-Christersson, Johan; Aaserud, Marit; Sveli, My Anh Tu; Borg, Åke; Garred, Øystein; Borgen, Elin; Naume, Bjørn et al.. 2021, Cancers.
https://doi.org/10.3390/cancers13236118 (Academic article)
Swarm v3: towards tera-scale amplicon clustering. Mahé, Frédéric; Czech, Lucas; Stamatakis, Alexandros; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah & Rognes, Torbjørn. 2021, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btab493 (Academic article)
Swarm v3: towards tera-scale amplicon clustering. Mahé, Frédéric; Czech, Lucas; Stamatakis, Alexandros; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah & Rognes, Torbjørn. 2021, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btab493 (Academic article)
T cell receptor repertoire as a potential diagnostic marker for celiac disease. Yao, Ying; Zia, Asima; Neumann, Ralf Stefan; Pavlović, Milena; Balaban, Gabriel; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Qiao, Shuo Wang. 2021, Clinical Immunology.
https://doi.org/10.1016/j.clim.2020.108621 (Academic article)
T cell receptor repertoire as a potential diagnostic marker for celiac disease. Yao, Ying; Zia, Asima; Neumann, Ralf Stefan; Pavlović, Milena; Balaban, Gabriel; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Qiao, Shuo Wang. 2021, Clinical Immunology.
https://doi.org/10.1016/j.clim.2020.108621 (Academic article)
Telomerase as a Target for Therapeutic Cancer Vaccines and Considerations for Optimizing Their Clinical Potential. Ellingsen, Espen Basmo; Mangsbo, Sara; Hovig, Eivind & Gaudernack, Gustav. 2021, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2021.682492 (Academic literature review)
Telomerase as a Target for Therapeutic Cancer Vaccines and Considerations for Optimizing Their Clinical Potential. Ellingsen, Espen Basmo; Mangsbo, Sara; Hovig, Eivind & Gaudernack, Gustav. 2021, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2021.682492 (Academic literature review)
Ten simple rules for quick and dirty scientific programming. Balaban, Gabriel; Grytten, Ivar; Rand, Knut Dagestad; Scheffer, Lonneke & Sandve, Geir Kjetil. 2021, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1008549 (Editoral)
Ten simple rules for quick and dirty scientific programming. Balaban, Gabriel; Grytten, Ivar; Rand, Knut Dagestad; Scheffer, Lonneke & Sandve, Geir Kjetil. 2021, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1008549 (Editoral)
The CRCbiome study: a large prospective cohort study examining the role of lifestyle and the gut microbiome in colorectal cancer screening participants. Kværner, Ane Sørlie; Birkeland, Einar Elvbakken; Bucher-Johannessen, Cecilie; Vinberg, Elina; Nordby, Jan Inge; Kangas, Harri; Bemanian, Vahid; Ellonen, Pekka; Botteri, Edoardo; Natvig, Erik et al.. 2021, BMC Cancer.
https://doi.org/10.1186/s12885-021-08640-8 (Academic article)
The CRCbiome study: a large prospective cohort study examining the role of lifestyle and the gut microbiome in colorectal cancer screening participants. Kværner, Ane Sørlie; Birkeland, Einar Elvbakken; Bucher-Johannessen, Cecilie; Vinberg, Elina; Nordby, Jan Inge; Kangas, Harri; Bemanian, Vahid; Ellonen, Pekka; Botteri, Edoardo; Natvig, Erik et al.. 2021, BMC Cancer.
https://doi.org/10.1186/s12885-021-08640-8 (Academic article)
The Future of Blood Testing Is the Immunome. Arnaout, Ramy A.; Luning Prak, Eline T.; Schwab, Nicholas; Rubelt, Florian; Greiff, Victor; Pavlović, Milena; Sandve, Geir Kjetil Ferkingstad; Snapkov, Igor; Arora, Rohit; Bashford-Rogers, Rachael et al.. 2021, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2021.626793 (Academic literature review)
The Future of Blood Testing Is the Immunome. Arnaout, Ramy A.; Luning Prak, Eline T.; Schwab, Nicholas; Rubelt, Florian; Greiff, Victor; Pavlović, Milena; Sandve, Geir Kjetil Ferkingstad; Snapkov, Igor; Arora, Rohit; Bashford-Rogers, Rachael et al.. 2021, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2021.626793 (Academic literature review)
The genetic structure of Norway. Mattingsdal, Morten; Ebenesersdóttir, Sigríður Sunna; Moore, Kristjan H. S.; Andreassen, Ole Andreas; Hansen, Thomas F.; Werge, Thomas; Kockum, Ingrid; Olsson, Tomas; Alfredsson, Lars; Helgason, Agnar et al.. 2021, European Journal of Human Genetics.
https://doi.org/10.1038/s41431-021-00899-6 (Academic article)
The genetic structure of Norway. Mattingsdal, Morten; Ebenesersdóttir, Sigríður Sunna; Moore, Kristjan H. S.; Andreassen, Ole Andreas; Hansen, Thomas F.; Werge, Thomas; Kockum, Ingrid; Olsson, Tomas; Alfredsson, Lars; Helgason, Agnar et al.. 2021, European Journal of Human Genetics.
https://doi.org/10.1038/s41431-021-00899-6 (Academic article)
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Kanduri, Chakravarthi; Kompova, Radmila; Vazov, Nikolay Aleksandrov; Waagan, Knut; Bernal, Fabian Leonardo Martinez; Costa, Alexandre Almeida; Corrie, Brian et al.. 2021, Nature Machine Intelligence.
https://doi.org/10.1038/s42256-021-00413-z (Academic article)
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Kanduri, Chakravarthi; Kompova, Radmila; Vazov, Nikolay Aleksandrov; Waagan, Knut; Bernal, Fabian Leonardo Martinez; Costa, Alexandre Almeida; Corrie, Brian et al.. 2021, Nature Machine Intelligence.
https://doi.org/10.1038/s42256-021-00413-z (Academic article)
The quandary of dna-based treatment assessment in de novo metastatic prostate cancer in the era of precision oncology. Nakken, Sigve; Lilleby, Wolfgang; Switlyk, Marta Daniela; Knudsen, Karen E.; Lilleby, Oscar; Zhao, Sen; Kaveh, Fatemeh; Ekstrøm, Per O.; Urbanucci, Alfonso & Hovig, Eivind. 2021, Journal of Personalized Medicine.
https://doi.org/10.3390/jpm11050330 (Academic article)
The quandary of dna-based treatment assessment in de novo metastatic prostate cancer in the era of precision oncology. Nakken, Sigve; Lilleby, Wolfgang; Switlyk, Marta Daniela; Knudsen, Karen E.; Lilleby, Oscar; Zhao, Sen; Kaveh, Fatemeh; Ekstrøm, Per O.; Urbanucci, Alfonso & Hovig, Eivind. 2021, Journal of Personalized Medicine.
https://doi.org/10.3390/jpm11050330 (Academic article)
Uptake of hysterectomy and bilateral salpingo-oophorectomy in carriers of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report. Seppälä, Toni T.; Dominguez-Valentin, Mev; Crosbie, Emma J.; Engel, Christoph; Aretz, Stefan; Macrae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Hovig, Eivind et al.. 2021, European Journal of Cancer.
https://doi.org/10.1016/j.ejca.2021.02.022 (Academic article)
Uptake of hysterectomy and bilateral salpingo-oophorectomy in carriers of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report. Seppälä, Toni T.; Dominguez-Valentin, Mev; Crosbie, Emma J.; Engel, Christoph; Aretz, Stefan; Macrae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Hovig, Eivind et al.. 2021, European Journal of Cancer.
https://doi.org/10.1016/j.ejca.2021.02.022 (Academic article)
Whole genome copy number analyses reveal a highly aberrant genome in TP53 mutant lung adenocarcinoma tumors. Bjaanæs, Maria Moksnes; Nilsen, Gro; Halvorsen, Ann Rita; Russnes, Hege Elisabeth Giercksky; Solberg, Steinar; Jørgensen, Lars; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2021, BMC Cancer.
https://doi.org/10.1186/s12885-021-08811-7 (Academic article)
Whole genome copy number analyses reveal a highly aberrant genome in TP53 mutant lung adenocarcinoma tumors. Bjaanæs, Maria Moksnes; Nilsen, Gro; Halvorsen, Ann Rita; Russnes, Hege Elisabeth Giercksky; Solberg, Steinar; Jørgensen, Lars; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2021, BMC Cancer.
https://doi.org/10.1186/s12885-021-08811-7 (Academic article)
2020
3D Electrophysiological Modeling of Interstitial Fibrosis Networks and Their Role in Ventricular Arrhythmias in Non-Ischemic Cardiomyopathy. Balaban, Gabriel; Costa, Caroline Mendonca; Porter, Bradley; Halliday, Brian; Rinaldi, Christopher A.; Prasad, Sanjay K.; Plank, Gernot; Ismail, Tevfik & Bishop, Martin. 2020, IEEE Transactions on Biomedical Engineering.
https://doi.org/10.1109/TBME.2020.2976924 (Academic article)
3D Electrophysiological Modeling of Interstitial Fibrosis Networks and Their Role in Ventricular Arrhythmias in Non-Ischemic Cardiomyopathy. Balaban, Gabriel; Costa, Caroline Mendonca; Porter, Bradley; Halliday, Brian; Rinaldi, Christopher A.; Prasad, Sanjay K.; Plank, Gernot; Ismail, Tevfik & Bishop, Martin. 2020, IEEE Transactions on Biomedical Engineering.
https://doi.org/10.1109/TBME.2020.2976924 (Academic article)
A computational investigation into rate-dependant vectorcardiogram changes due to specific fibrosis patterns in non-ischæmic dilated cardiomyopathy. Gemmell, Philip M.; Gillette, Karli; Balaban, Gabriel; Rajani, Ronak; Vigmond, Edward J.; Plank, Gernot & Bishop, Martin. 2020, Computers in Biology and Medicine.
https://doi.org/10.1016/j.compbiomed.2020.103895 (Academic article)
A computational investigation into rate-dependant vectorcardiogram changes due to specific fibrosis patterns in non-ischæmic dilated cardiomyopathy. Gemmell, Philip M.; Gillette, Karli; Balaban, Gabriel; Rajani, Ronak; Vigmond, Edward J.; Plank, Gernot & Bishop, Martin. 2020, Computers in Biology and Medicine.
https://doi.org/10.1016/j.compbiomed.2020.103895 (Academic article)
Accuracy and efficiency of germline variant calling pipelines for human genome data. Zhao, Sen; Agafonov, Oleg; Azab, Abdulrahman; Stokowy, Tomasz & Hovig, Eivind. 2020, Scientific Reports.
https://doi.org/10.1038/s41598-020-77218-4 (Academic article)
Accuracy and efficiency of germline variant calling pipelines for human genome data. Zhao, Sen; Agafonov, Oleg; Azab, Abdulrahman; Stokowy, Tomasz & Hovig, Eivind. 2020, Scientific Reports.
https://doi.org/10.1038/s41598-020-77218-4 (Academic article)
Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods. Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan & Sandve, Geir Kjetil. 2020, BMC Genomics.
https://doi.org/10.1186/s12864-020-6685-y (Academic article)
Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods. Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan & Sandve, Geir Kjetil. 2020, BMC Genomics.
https://doi.org/10.1186/s12864-020-6685-y (Academic article)
Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas (Nature Genetics, (2014), 46, 9, (964-972), 10.1038/ng.3065). Molyneux, Sam D.; Waterhouse, Paul D.; Shelton, Dawne; Shao, Yang W.; Watling, Christopher M.; Tang, Qing-Lian; Harris, Isaac S.; Dickson, Brendan C.; Tharmapalan, Pirashaanthy; Sandve, Geir Kjetil Ferkingstad et al.. 2020, Nature Genetics.
https://doi.org/10.1038/s41588-020-0589-2 (Errata)
Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas (Nature Genetics, (2014), 46, 9, (964-972), 10.1038/ng.3065). Molyneux, Sam D.; Waterhouse, Paul D.; Shelton, Dawne; Shao, Yang W.; Watling, Christopher M.; Tang, Qing-Lian; Harris, Isaac S.; Dickson, Brendan C.; Tharmapalan, Pirashaanthy; Sandve, Geir Kjetil Ferkingstad et al.. 2020, Nature Genetics.
https://doi.org/10.1038/s41588-020-0589-2 (Errata)
B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2. du Pré, Fleur; Blazevski, Jana; Dewan, Alisa Elinsdatter; Stamnæs, Jorunn; Kanduri, Srinivasa Kalyana Chakravarthi; Sandve, Geir Kjetil; Johannesen, Marie Kongshaug; Lindstad, Christian Borgen; Hnida, Kathrin; Fugger, Lars et al.. 2020, Journal of Experimental Medicine (JEM).
https://doi.org/10.1084/jem.20190860 (Academic article)
B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2. du Pré, Fleur; Blazevski, Jana; Dewan, Alisa Elinsdatter; Stamnæs, Jorunn; Kanduri, Srinivasa Kalyana Chakravarthi; Sandve, Geir Kjetil; Johannesen, Marie Kongshaug; Lindstad, Christian Borgen; Hnida, Kathrin; Fugger, Lars et al.. 2020, Journal of Experimental Medicine (JEM).
https://doi.org/10.1084/jem.20190860 (Academic article)
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits. Dai, Kael; Gratiy, Sergey L.; Billeh, Yazan; Xu, Richard; Cai, Binghuang; Cain, Nicholas; Rimehaug, Atle Eskeland; Stasik, Alexander Johannes; Einevoll, Gaute; Mihalas, Stefan et al.. 2020, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1008386 (Academic article)
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits. Dai, Kael; Gratiy, Sergey L.; Billeh, Yazan; Xu, Richard; Cai, Binghuang; Cain, Nicholas; Rimehaug, Atle Eskeland; Stasik, Alexander Johannes; Einevoll, Gaute; Mihalas, Stefan et al.. 2020, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1008386 (Academic article)
Breast cancer survival in Nordic BRCA2 mutation carriers—unconventional association with oestrogen receptor status. Olafsdottir, Elinborg J.; Borg, Åke; Jensen, Maj-Britt; Gerdes, Anne-Marie; Johansson, Anna L. V.; Barkardottir, Rosa B.; Johannsson, Oskar; Ejlertsen, Bent; Sønderstrup, Ida Marie Heeholm; Hovig, Eivind et al.. 2020, British Journal of Cancer.
https://doi.org/10.1038/s41416-020-01056-4 (Academic article)
Breast cancer survival in Nordic BRCA2 mutation carriers—unconventional association with oestrogen receptor status. Olafsdottir, Elinborg J.; Borg, Åke; Jensen, Maj-Britt; Gerdes, Anne-Marie; Johansson, Anna L. V.; Barkardottir, Rosa B.; Johannsson, Oskar; Ejlertsen, Bent; Sønderstrup, Ida Marie Heeholm; Hovig, Eivind et al.. 2020, British Journal of Cancer.
https://doi.org/10.1038/s41416-020-01056-4 (Academic article)
Computational approaches in cancer multidrug resistance research: Identification of potential biomarkers, drug targets and drug-target interactions. Tolios, Alexander; De Las Rivas, Javier; Hovig, Eivind; Trouillas, Patrick; Scorilas, Andreas & Mohr, Thomas. 2020, Drug resistance updates.
https://doi.org/10.1016/j.drup.2019.100662 (Academic article)
Computational approaches in cancer multidrug resistance research: Identification of potential biomarkers, drug targets and drug-target interactions. Tolios, Alexander; De Las Rivas, Javier; Hovig, Eivind; Trouillas, Patrick; Scorilas, Andreas & Mohr, Thomas. 2020, Drug resistance updates.
https://doi.org/10.1016/j.drup.2019.100662 (Academic article)
Correction: Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database (Genetics in Medicine, (2020), 22, 1, (15-25), 10.1038/s41436-019-0596-9). Dominguez-Valentin, Mev; Sampson, Julian R.; Seppälä, Toni T.; ten Broeke, Sanne W.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2020, Genetics in Medicine.
https://doi.org/10.1038/s41436-020-0892-4 (Errata)
Correction: Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database (Genetics in Medicine, (2020), 22, 1, (15-25), 10.1038/s41436-019-0596-9). Dominguez-Valentin, Mev; Sampson, Julian R.; Seppälä, Toni T.; ten Broeke, Sanne W.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2020, Genetics in Medicine.
https://doi.org/10.1038/s41436-020-0892-4 (Errata)
Correction: Causes for frequent pathogenic brca1 variants include low penetrance in fertile ages, recurrent de-novo mutations and genetic drift (Cancers, (2019), 11, 132, 10.3390/cancers11020132). Møller, Pål; Dominguez-Valentin, Mev; Rødland, Einar Andreas & Hovig, Eivind. 2020, Cancers.
https://doi.org/10.3390/cancers12020410 (Errata)
Correction: Causes for frequent pathogenic brca1 variants include low penetrance in fertile ages, recurrent de-novo mutations and genetic drift (Cancers, (2019), 11, 132, 10.3390/cancers11020132). Møller, Pål; Dominguez-Valentin, Mev; Rødland, Einar Andreas & Hovig, Eivind. 2020, Cancers.
https://doi.org/10.3390/cancers12020410 (Errata)
DNA copy number motifs are strong and independent predictors of survival in breast cancer. Pladsen, Arne Valebjørg; Nilsen, Gro; Rueda, Oscar M.; Aure, Miriam Ragle; Borgan, Ørnulf; Liestøl, Knut; Vitelli, Valeria; Frigessi Di Rattalma, Arnoldo; Langerød, Anita; Mathelier, Anthony et al.. 2020, Communications Biology.
https://doi.org/10.1038/s42003-020-0884-6 (Academic article)
DNA copy number motifs are strong and independent predictors of survival in breast cancer. Pladsen, Arne Valebjørg; Nilsen, Gro; Rueda, Oscar M.; Aure, Miriam Ragle; Borgan, Ørnulf; Liestøl, Knut; Vitelli, Valeria; Frigessi Di Rattalma, Arnoldo; Langerød, Anita; Mathelier, Anthony et al.. 2020, Communications Biology.
https://doi.org/10.1038/s42003-020-0884-6 (Academic article)
Dysregulation of MITF Leads to Transformation in MC1R-Defective Melanocytes. Lavelle, Timothy J; Alver, Tine Norman; Heintz, Karen Marie; Wernhoff, Patrik; Nygaard, Vegard; Nakken, Sigve; Øy, Geir Frode; Bøe, Sigurd; Urbanucci, Alfonso & Hovig, Eivind. 2020, Cancers.
https://doi.org/10.3390/cancers12071719 (Academic article)
Dysregulation of MITF Leads to Transformation in MC1R-Defective Melanocytes. Lavelle, Timothy J; Alver, Tine Norman; Heintz, Karen Marie; Wernhoff, Patrik; Nygaard, Vegard; Nakken, Sigve; Øy, Geir Frode; Bøe, Sigurd; Urbanucci, Alfonso & Hovig, Eivind. 2020, Cancers.
https://doi.org/10.3390/cancers12071719 (Academic article)
Erratum: MirGeneDB 2.0: The metazoan microRNA complement (Nucleic Acids Research (2019) DOI: 10.1093/nar/gkz885). Fromm, Bastian; Domanska, Diana; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind et al.. 2020, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkz1016 (Errata)
Erratum: MirGeneDB 2.0: The metazoan microRNA complement (Nucleic Acids Research (2019) DOI: 10.1093/nar/gkz885). Fromm, Bastian; Domanska, Diana; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind et al.. 2020, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkz1016 (Errata)
Frequent copy number gains of SLC2A3 and ETV1 in testicular embryonal carcinomas. Hoff, Andreas Midbøe; Kraggerud, Sigrid M.; Alagaratnam, Sharmini; Berg, Kaja Christine Graue; Johannessen, Bjarne; Høland, Maren; Nilsen, Gro; Lingjærde, Ole Christian; Andrews, Peter W.; Lothe, Ragnhild A et al.. 2020, Endocrine-Related Cancer.
https://doi.org/10.1530/ERC-20-0064 (Academic article)
Frequent copy number gains of SLC2A3 and ETV1 in testicular embryonal carcinomas. Hoff, Andreas Midbøe; Kraggerud, Sigrid M.; Alagaratnam, Sharmini; Berg, Kaja Christine Graue; Johannessen, Bjarne; Høland, Maren; Nilsen, Gro; Lingjærde, Ole Christian; Andrews, Peter W.; Lothe, Ragnhild A et al.. 2020, Endocrine-Related Cancer.
https://doi.org/10.1530/ERC-20-0064 (Academic article)
Germline HOXB13 mutations p.G84E and p.R217C do not confer an increased breast cancer risk. Liu, Jingjing; van der Smissen, Wendy J. C. Prager; Collee, Margriet J.; Bolla, Manjeet K.; Wang, Qin; Kristensen, Vessela N.; Sahlberg, Kristine Kleivi; Børresen-Dale, Anne-Lise; Ottestad, Lars; Kåresen, Rolf et al.. 2020, Scientific Reports.
https://doi.org/10.1038/s41598-020-65665-y (Academic article)
Germline HOXB13 mutations p.G84E and p.R217C do not confer an increased breast cancer risk. Liu, Jingjing; van der Smissen, Wendy J. C. Prager; Collee, Margriet J.; Bolla, Manjeet K.; Wang, Qin; Kristensen, Vessela N.; Sahlberg, Kristine Kleivi; Børresen-Dale, Anne-Lise; Ottestad, Lars; Kåresen, Rolf et al.. 2020, Scientific Reports.
https://doi.org/10.1038/s41598-020-65665-y (Academic article)
HMST-Seq-Analyzer: A new python tool for differential methylation and hydroxymethylation analysis in various DNA methylation sequencing data. Farooq, Amna; Grønmyr, Sindre; Omer, Ali Avan; Rognes, Torbjørn; Scheffler, Katja; Bjørås, Magnar & Wang, Junbai. 2020, Computational and Structural Biotechnology Journal.
https://doi.org/10.1016/j.csbj.2020.09.038 (Academic article)
HMST-Seq-Analyzer: A new python tool for differential methylation and hydroxymethylation analysis in various DNA methylation sequencing data. Farooq, Amna; Grønmyr, Sindre; Omer, Ali Avan; Rognes, Torbjørn; Scheffler, Katja; Bjørås, Magnar & Wang, Junbai. 2020, Computational and Structural Biotechnology Journal.
https://doi.org/10.1016/j.csbj.2020.09.038 (Academic article)
ICON: A randomized phase IIb study evaluating immunogenic chemotherapy combined with ipilimumab and nivolumab in patients with metastatic hormone receptor positive breast cancer. Kyte, Jon A; Andresen, Nikolai Kragøe; Russnes, Hege Elisabeth Giercksky; Fretland, Signe Øien; Falk, Ragnhild Sørum; Lingjærde, Ole Christian & Naume, Bjørn. 2020, Journal of Translational Medicine.
https://doi.org/10.1186/s12967-020-02421-w (Academic article)
ICON: A randomized phase IIb study evaluating immunogenic chemotherapy combined with ipilimumab and nivolumab in patients with metastatic hormone receptor positive breast cancer. Kyte, Jon A; Andresen, Nikolai Kragøe; Russnes, Hege Elisabeth Giercksky; Fretland, Signe Øien; Falk, Ragnhild Sørum; Lingjærde, Ole Christian & Naume, Bjørn. 2020, Journal of Translational Medicine.
https://doi.org/10.1186/s12967-020-02421-w (Academic article)
Immune phenotype of tumor microenvironment predicts response to bevacizumab in neoadjuvant treatment of ER-positive breast cancer. Gythfeldt, Hedda von der Lippe; Lien, Tonje Gulbrandsen; Tekpli, Xavier; Silwal-Pandit, Laxmi; Borgen, Elin; Garred, Øystein; Skjerven, Helle; Schlichting, Ellen; Lundgren, Steinar; Wist, Erik et al.. 2020, International Journal of Cancer.
https://doi.org/10.1002/ijc.33108 (Academic article)
Immune phenotype of tumor microenvironment predicts response to bevacizumab in neoadjuvant treatment of ER-positive breast cancer. Gythfeldt, Hedda von der Lippe; Lien, Tonje Gulbrandsen; Tekpli, Xavier; Silwal-Pandit, Laxmi; Borgen, Elin; Garred, Øystein; Skjerven, Helle; Schlichting, Ellen; Lundgren, Steinar; Wist, Erik et al.. 2020, International Journal of Cancer.
https://doi.org/10.1002/ijc.33108 (Academic article)
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking. Weber, Cédric R.; Akbar, Rahmad; Yermanos, Alexander; Pavlovic, Milena; Snapkov, Igor; Sandve, Geir Kjetil; Reddy, Sai T. & Greiff, Victor. 2020, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btaa158 (Academic article)
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking. Weber, Cédric R.; Akbar, Rahmad; Yermanos, Alexander; Pavlovic, Milena; Snapkov, Igor; Sandve, Geir Kjetil; Reddy, Sai T. & Greiff, Victor. 2020, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btaa158 (Academic article)
Loss of Snord116 impacts lateral hypothalamus, sleep, and food-related behaviors. Pace, Marta; Falappa, Matteo; Freschi, Andrea; Balzani, Edoardo; Berteotti, Chiara; Martire, Viviana Lo; Kaveh, Fatemeh; Hovig, Eivind; Zoccoli, Giovanna; Amici, Roberto et al.. 2020, JCI Insight.
https://doi.org/10.1172/jci.insight.137495 (Academic article)
Loss of Snord116 impacts lateral hypothalamus, sleep, and food-related behaviors. Pace, Marta; Falappa, Matteo; Freschi, Andrea; Balzani, Edoardo; Berteotti, Chiara; Martire, Viviana Lo; Kaveh, Fatemeh; Hovig, Eivind; Zoccoli, Giovanna; Amici, Roberto et al.. 2020, JCI Insight.
https://doi.org/10.1172/jci.insight.137495 (Academic article)
LXRα Regulates ChREBPα Transactivity in a Target Gene-Specific Manner through an Agonist-Modulated LBD-LID Interaction. Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie; Lucas, Christin; Vekterud, Kristin; Södling, Helen; Matthews, Jason; Lemma, Roza Berhanu; Gabrielsen, Odd Stokke et al.. 2020, Cells.
https://doi.org/10.3390/cells9051214 (Academic article)
LXRα Regulates ChREBPα Transactivity in a Target Gene-Specific Manner through an Agonist-Modulated LBD-LID Interaction. Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie; Lucas, Christin; Vekterud, Kristin; Södling, Helen; Matthews, Jason; Lemma, Roza Berhanu; Gabrielsen, Odd Stokke et al.. 2020, Cells.
https://doi.org/10.3390/cells9051214 (Academic article)
Molecularly matched therapy in the context of sensitivity, resistance, and safety; patient outcomes in end-stage cancer?the MetAction study. Ree, Anne Hansen; Nygaard, Vigdis; Pedersen, Kjetil Boye; Heinrich, Daniel; Dueland, Svein; Bergheim, Inger Riise; Johansen, Christin; Beiske, Klaus; Negård, Anne; Lund-Iversen, Marius et al.. 2020, Acta Oncologica.
https://doi.org/10.1080/0284186X.2020.1742377 (Academic article)
Molecularly matched therapy in the context of sensitivity, resistance, and safety; patient outcomes in end-stage cancer?the MetAction study. Ree, Anne Hansen; Nygaard, Vigdis; Pedersen, Kjetil Boye; Heinrich, Daniel; Dueland, Svein; Bergheim, Inger Riise; Johansen, Christin; Beiske, Klaus; Negård, Anne; Lund-Iversen, Marius et al.. 2020, Acta Oncologica.
https://doi.org/10.1080/0284186X.2020.1742377 (Academic article)
Mutational dynamics and immune evasion in diffuse large B-cell lymphoma explored in a relapse-enriched patient series. Wise, Jillian; Nakken, Sigve; Steen, Chloe Beate; Vodak, Daniel; Trøen, Gunhild; Johannessen, Bjarne; Lingjærde, Ole Christian; Hilden, Vera Irene; Blaker, Yngvild Nuvin; Bai, Baoyan et al.. 2020, Blood Advances.
https://doi.org/10.1182/bloodadvances.2019001325 (Academic article)
Mutational dynamics and immune evasion in diffuse large B-cell lymphoma explored in a relapse-enriched patient series. Wise, Jillian; Nakken, Sigve; Steen, Chloe Beate; Vodak, Daniel; Trøen, Gunhild; Johannessen, Bjarne; Lingjærde, Ole Christian; Hilden, Vera Irene; Blaker, Yngvild Nuvin; Bai, Baoyan et al.. 2020, Blood Advances.
https://doi.org/10.1182/bloodadvances.2019001325 (Academic article)
NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads. Khelik, Ksenia; Sandve, Geir Kjetil; Nederbragt, Alexander Johan & Rognes, Torbjørn. 2020, BMC Bioinformatics.
https://doi.org/10.1186/s12859-020-3414-0 (Academic article)
NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads. Khelik, Ksenia; Sandve, Geir Kjetil; Nederbragt, Alexander Johan & Rognes, Torbjørn. 2020, BMC Bioinformatics.
https://doi.org/10.1186/s12859-020-3414-0 (Academic article)
Pan-cancer analysis of whole genomes. ICGC/TCGA Pan-Cancer Analysis, of Whole Genomes Consortium; Campbell, Peter J.; Getz, Gad; Korbel, Jan O.; Stuart, Joshua M.; Jennings, Jennifer L.; Aure, Miriam Ragle; Langerød, Anita; Børresen-Dale, Anne-Lise; Garred, Øystein et al.. 2020, Nature.
https://doi.org/10.1038/s41586-020-1969-6 (Academic article)
Pan-cancer analysis of whole genomes. ICGC/TCGA Pan-Cancer Analysis, of Whole Genomes Consortium; Campbell, Peter J.; Getz, Gad; Korbel, Jan O.; Stuart, Joshua M.; Jennings, Jennifer L.; Aure, Miriam Ragle; Langerød, Anita; Børresen-Dale, Anne-Lise; Garred, Øystein et al.. 2020, Nature.
https://doi.org/10.1038/s41586-020-1969-6 (Academic article)
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Bailey, Matthew H.; Meyerson, William U.; Dursi, L. Jonathan; Wang, Liang-Bo; Dong, Guanlan; Aure, Miriam Ragle; Børresen-Dale, Anne-Lise; Langerød, Anita; Bjerkehagen, Bodil; Garred, Øystein et al.. 2020, Nature Communications.
https://doi.org/10.1038/s41467-020-18151-y (Academic article)
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Bailey, Matthew H.; Meyerson, William U.; Dursi, L. Jonathan; Wang, Liang-Bo; Dong, Guanlan; Aure, Miriam Ragle; Børresen-Dale, Anne-Lise; Langerød, Anita; Bjerkehagen, Bodil; Garred, Øystein et al.. 2020, Nature Communications.
https://doi.org/10.1038/s41467-020-18151-y (Academic article)
Risk-Reducing Gynecological Surgery in Lynch
Syndrome: Results of an International Survey from
the Prospective Lynch Syndrome Database. Dominguez-Valentin, Mev; Seppälä, Toni T.; Engel, Christoph; Aretz, Stefan; Macrae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Hovig, Eivind; Nielsen, Maartje et al.. 2020, Journal of Clinical Medicine.
https://doi.org/10.3390/jcm9072290 (Academic article)
Risk-Reducing Gynecological Surgery in Lynch
Syndrome: Results of an International Survey from
the Prospective Lynch Syndrome Database. Dominguez-Valentin, Mev; Seppälä, Toni T.; Engel, Christoph; Aretz, Stefan; Macrae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Hovig, Eivind; Nielsen, Maartje et al.. 2020, Journal of Clinical Medicine.
https://doi.org/10.3390/jcm9072290 (Academic article)
Risk-reducing hysterectomy and bilateral salpingo-oophorectomy in female heterozygotes of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report. Dominguez-Valentin, Mev; Crosbie, Emma J.; Engel, Christoph; Aretz, Stefan; MacRae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Nakken, Sigve; Hovig, Eivind et al.. 2020, Genetics in Medicine.
https://doi.org/10.1038/s41436-020-01029-1 (Academic article)
Risk-reducing hysterectomy and bilateral salpingo-oophorectomy in female heterozygotes of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report. Dominguez-Valentin, Mev; Crosbie, Emma J.; Engel, Christoph; Aretz, Stefan; MacRae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Nakken, Sigve; Hovig, Eivind et al.. 2020, Genetics in Medicine.
https://doi.org/10.1038/s41436-020-01029-1 (Academic article)
Sex differences in oncogenic mutational processes. Li, Constance H.; Prokopec, Stephenie D.; Sun, Ren X.; Yousif, Fouad; Schmitz, Nathaniel; Aure, Miriam Ragle; Børresen-Dale, Anne-Lise; Langerød, Anita; Bjerkehagen, Bodil; Garred, Øystein et al.. 2020, Nature Communications.
https://doi.org/10.1038/s41467-020-17359-2 (Academic article)
Sex differences in oncogenic mutational processes. Li, Constance H.; Prokopec, Stephenie D.; Sun, Ren X.; Yousif, Fouad; Schmitz, Nathaniel; Aure, Miriam Ragle; Børresen-Dale, Anne-Lise; Langerød, Anita; Bjerkehagen, Bodil; Garred, Øystein et al.. 2020, Nature Communications.
https://doi.org/10.1038/s41467-020-17359-2 (Academic article)
Tankyrase inhibition sensitizes melanoma to PD-1 immune checkpoint blockade in syngeneic mouse models. Waaler, Jo; Mygland, Line; Tveita, Anders Aune; Strand, Martin Frank; Solberg, Nina; Olsen, Petter Angell; Aizenshtadt, Aleksandra; Fauskanger, Marte; Lund, Kaja; Mahmuda, Shoshy (Brinch, Shoshy Alam) et al.. 2020, Communications Biology.
https://doi.org/10.1038/s42003-020-0916-2 (Academic article)
Tankyrase inhibition sensitizes melanoma to PD-1 immune checkpoint blockade in syngeneic mouse models. Waaler, Jo; Mygland, Line; Tveita, Anders Aune; Strand, Martin Frank; Solberg, Nina; Olsen, Petter Angell; Aizenshtadt, Aleksandra; Fauskanger, Marte; Lund, Kaja; Mahmuda, Shoshy (Brinch, Shoshy Alam) et al.. 2020, Communications Biology.
https://doi.org/10.1038/s42003-020-0916-2 (Academic article)
The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID. Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana Ewa; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan et al.. 2020, NAR Cancer.
https://doi.org/10.1093/narcan/zcaa019 (Academic article)
The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID. Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana Ewa; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan et al.. 2020, NAR Cancer.
https://doi.org/10.1093/narcan/zcaa019 (Academic article)
2019
A clinico-molecular predictor identifies follicular lymphoma patients at risk of early transformation after first-line immunotherapy. Steen, Chloe Beate; Leich, Ellen; Myklebust, June Helen; Lockmer, Sandra; Wise, Jillian; Wahlin, Björn Engelbrekt; Østenstad, Bjørn; Liestøl, Knut; Kimby, Eva; Rosenwald, Andreas et al.. 2019, Haematologica.
https://doi.org/10.3324/haematol.2018.209080 (Academic article)
A clinico-molecular predictor identifies follicular lymphoma patients at risk of early transformation after first-line immunotherapy. Steen, Chloe Beate; Leich, Ellen; Myklebust, June Helen; Lockmer, Sandra; Wise, Jillian; Wahlin, Björn Engelbrekt; Østenstad, Bjørn; Liestøl, Knut; Kimby, Eva; Rosenwald, Andreas et al.. 2019, Haematologica.
https://doi.org/10.3324/haematol.2018.209080 (Academic article)
A map of direct TF–DNA interactions in the human
genome. Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit & Mathelier, Anthony. 2019, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gky1210 (Academic article)
A map of direct TF–DNA interactions in the human
genome. Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit & Mathelier, Anthony. 2019, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gky1210 (Academic article)
A snapshot of current genetic testing practice in Lynch syndrome: The results of a representative survey of 33 Latin American existing centres/registries. Della Valle, Adriana; Rossi, Benedito Mauro; Palmero, Edenir Inêz; Antelo, Marina; Vaccaro, Carlos Alberto; López-Köstner, Francisco; Alvarez, Karin; Cruz-Correa, Marcia; Bruno, Luisina Inés; Forones, Nora Manoukian et al.. 2019, European Journal of Cancer.
https://doi.org/10.1016/j.ejca.2019.07.017 (Academic article)
A snapshot of current genetic testing practice in Lynch syndrome: The results of a representative survey of 33 Latin American existing centres/registries. Della Valle, Adriana; Rossi, Benedito Mauro; Palmero, Edenir Inêz; Antelo, Marina; Vaccaro, Carlos Alberto; López-Köstner, Francisco; Alvarez, Karin; Cruz-Correa, Marcia; Bruno, Luisina Inés; Forones, Nora Manoukian et al.. 2019, European Journal of Cancer.
https://doi.org/10.1016/j.ejca.2019.07.017 (Academic article)
Alterations in schizophrenia-associated genes can lead to increased power in delta oscillations. Mäki-Marttunen, Tuomo; Krull, Florian; Bettella, Francesco; Hagen, Espen; Næss, Solveig; Ness, Torbjørn V; Moberget, Torgeir; Elvsåshagen, Torbjørn; Metzner, Christoph; Devor, Anna et al.. 2019, Cerebral Cortex.
https://doi.org/10.1093/cercor/bhy291 (Academic article)
Alterations in schizophrenia-associated genes can lead to increased power in delta oscillations. Mäki-Marttunen, Tuomo; Krull, Florian; Bettella, Francesco; Hagen, Espen; Næss, Solveig; Ness, Torbjørn V; Moberget, Torgeir; Elvsåshagen, Torbjørn; Metzner, Christoph; Devor, Anna et al.. 2019, Cerebral Cortex.
https://doi.org/10.1093/cercor/bhy291 (Academic article)
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires. Brown, Alex; Snapkov, Igor; Akbar, Rahmad; Pavlovic, Milena; Miho, Enkelejda; Sandve, Geir Kjetil & Greiff, Victor. 2019, Molecular Systems Design & Engineering.
https://doi.org/10.1039/c9me00071b (Academic literature review)
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires. Brown, Alex; Snapkov, Igor; Akbar, Rahmad; Pavlovic, Milena; Miho, Enkelejda; Sandve, Geir Kjetil & Greiff, Victor. 2019, Molecular Systems Design & Engineering.
https://doi.org/10.1039/c9me00071b (Academic literature review)
Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis. Salvatore, Stefania; Rand, Knut Dagestad; Grytten, Ivar; Ferkingstad, Egil; Domanska, Diana; Holden, Lars; Gheorghe, Marius; Mathelier, Anthony; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2019, Briefings in Bioinformatics.
https://doi.org/10.1093/bib/bbz083 (Academic article)
Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis. Salvatore, Stefania; Rand, Knut Dagestad; Grytten, Ivar; Ferkingstad, Egil; Domanska, Diana; Holden, Lars; Gheorghe, Marius; Mathelier, Anthony; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2019, Briefings in Bioinformatics.
https://doi.org/10.1093/bib/bbz083 (Academic article)
Biophysical Psychiatry—How Computational Neuroscience Can Help to Understand the Complex Mechanisms of Mental Disorders.. Mäki-Marttunen, Tuomo; Kaufmann, Tobias; Elvsåshagen, Torbjørn; Devor, Anna; Djurovic, Srdjan; Westlye, Lars Tjelta; Linne, Marja-Leena; Rietschel, Marcella; Schubert, Dirk; Borgwardt, Stefan et al.. 2019, Frontiers in Psychiatry.
https://doi.org/10.3389/fpsyt.2019.00534 (Academic literature review)
Biophysical Psychiatry—How Computational Neuroscience Can Help to Understand the Complex Mechanisms of Mental Disorders.. Mäki-Marttunen, Tuomo; Kaufmann, Tobias; Elvsåshagen, Torbjørn; Devor, Anna; Djurovic, Srdjan; Westlye, Lars Tjelta; Linne, Marja-Leena; Rietschel, Marcella; Schubert, Dirk; Borgwardt, Stefan et al.. 2019, Frontiers in Psychiatry.
https://doi.org/10.3389/fpsyt.2019.00534 (Academic literature review)
Breast cancer quantitative proteome and proteogenomic landscape. Johansson, Henrik J.; Socciarelli, Fabio; Vacanti, Nathaniel M.; Haugen, Mads Haugland; Zhu, Yafeng; Siavelis, Ioannis; Fernandez-Woodbridge, Alejandro; Aure, Miriam Ragle; Sennblad, Bengt; Vesterlund, Mattias et al.. 2019, Nature Communications.
https://doi.org/10.1038/s41467-019-09018-y (Academic article)
Breast cancer quantitative proteome and proteogenomic landscape. Johansson, Henrik J.; Socciarelli, Fabio; Vacanti, Nathaniel M.; Haugen, Mads Haugland; Zhu, Yafeng; Siavelis, Ioannis; Fernandez-Woodbridge, Alejandro; Aure, Miriam Ragle; Sennblad, Bengt; Vesterlund, Mattias et al.. 2019, Nature Communications.
https://doi.org/10.1038/s41467-019-09018-y (Academic article)
Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database. Dominguez-Valentin, Mev; Sampson, Julian R.; Seppälä, Toni T.; ten Broeke, Sanne W.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2019, Genetics in Medicine.
https://doi.org/10.1038/s41436-019-0596-9 (Academic article)
Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database. Dominguez-Valentin, Mev; Sampson, Julian R.; Seppälä, Toni T.; ten Broeke, Sanne W.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2019, Genetics in Medicine.
https://doi.org/10.1038/s41436-019-0596-9 (Academic article)
Carotid Atherosclerosis and Cognitive Function in a General Population Aged 63-65 Years: Data from the Akershus Cardiac Examination (ACE) 1950 Study. Ihle-Hansen, Håkon; Vigen, Thea; Berge, Trygve; Hagberg, Guri; Engedal, Knut; Rønning, Ole M.; Thommessen, Bente; Lyngbakken, Magnus; Nygård, Ståle; Røsjø, Helge et al.. 2019, Journal of Alzheimer's Disease.
https://doi.org/10.3233/JAD-190327 (Academic article)
Carotid Atherosclerosis and Cognitive Function in a General Population Aged 63-65 Years: Data from the Akershus Cardiac Examination (ACE) 1950 Study. Ihle-Hansen, Håkon; Vigen, Thea; Berge, Trygve; Hagberg, Guri; Engedal, Knut; Rønning, Ole M.; Thommessen, Bente; Lyngbakken, Magnus; Nygård, Ståle; Røsjø, Helge et al.. 2019, Journal of Alzheimer's Disease.
https://doi.org/10.3233/JAD-190327 (Academic article)
Causes for Frequent Pathogenic BRCA1 Variants Include Low Penetrance in Fertile Ages, Recurrent De-Novo Mutations and Genetic Drift. Møller, Pål; Dominguez-Valentin, Mev; Rødland, Einar Andreas & Hovig, Eivind. 2019, Cancers.
https://doi.org/10.3390/cancers11020132 (Academic article)
Causes for Frequent Pathogenic BRCA1 Variants Include Low Penetrance in Fertile Ages, Recurrent De-Novo Mutations and Genetic Drift. Møller, Pål; Dominguez-Valentin, Mev; Rødland, Einar Andreas & Hovig, Eivind. 2019, Cancers.
https://doi.org/10.3390/cancers11020132 (Academic article)
Circulating Secretoneurin Concentrations After Cardiac Surgery: Data From the FINNish Acute Kidney Injury Heart Study. Brynildsen, Jon; Petaja, Liisa; Myhre, Peder Langeland; Lyngbakken, Magnus; Nygård, Ståle; Stridsberg, Mats; Christensen, Geir Arve; Ottesen, Anett Hellebø; Pettilä, Ville; Omland, Torbjørn et al.. 2019, Critical Care Medicine.
https://doi.org/10.1097/CCM.0000000000003670 (Academic article)
Circulating Secretoneurin Concentrations After Cardiac Surgery: Data From the FINNish Acute Kidney Injury Heart Study. Brynildsen, Jon; Petaja, Liisa; Myhre, Peder Langeland; Lyngbakken, Magnus; Nygård, Ståle; Stridsberg, Mats; Christensen, Geir Arve; Ottesen, Anett Hellebø; Pettilä, Ville; Omland, Torbjørn et al.. 2019, Critical Care Medicine.
https://doi.org/10.1097/CCM.0000000000003670 (Academic article)
Colocalization analyses of genomic elements: approaches, recommendations and challenges. Kanduri, Srinivasa Kalyana Chakravarthi; Bock, Christoph; Gundersen, Sveinung; Hovig, Eivind & Sandve, Geir Kjetil. 2019, Bioinformatics.
https://doi.org/10.1093/bioinformatics/bty835 (Academic article)
Colocalization analyses of genomic elements: approaches, recommendations and challenges. Kanduri, Srinivasa Kalyana Chakravarthi; Bock, Christoph; Gundersen, Sveinung; Hovig, Eivind & Sandve, Geir Kjetil. 2019, Bioinformatics.
https://doi.org/10.1093/bioinformatics/bty835 (Academic article)
Convergence of risk prediction models in follicular lymphoma. Silva, Anjali; Bassim, Sleiman; Sarkozy, Clementine; Mottok, Anja; Lackraj, Tracy; Jurinovic, Vindi; Brodtkorb, Marianne; Lingjærde, Ole Christian; Sehn, Laurie H.; Gascoyne, Randy D et al.. 2019, Haematologica.
https://doi.org/10.3324/haematol.2018.209031 (Letter to the editor)
Convergence of risk prediction models in follicular lymphoma. Silva, Anjali; Bassim, Sleiman; Sarkozy, Clementine; Mottok, Anja; Lackraj, Tracy; Jurinovic, Vindi; Brodtkorb, Marianne; Lingjærde, Ole Christian; Sehn, Laurie H.; Gascoyne, Randy D et al.. 2019, Haematologica.
https://doi.org/10.3324/haematol.2018.209031 (Letter to the editor)
Correction to: Landscape of somatic mutations in 560 breast cancer whole-genome sequences (Nature, (2016), 534, 7605, (47-54), 10.1038/nature17676). Nik-Zainal, Serena; Davies, Helen; Staaf, Johan; Ramakrishna, Manasa; Glodzik, Dominik; Zou, Xueqing; Martincorena, Inigo; Alexandrov, Ludmil B.; Martin, Sancha; Wedge, David C. et al.. 2019, Nature.
https://doi.org/10.1038/s41586-019-0883-2 (Errata)
Correction to: Landscape of somatic mutations in 560 breast cancer whole-genome sequences (Nature, (2016), 534, 7605, (47-54), 10.1038/nature17676). Nik-Zainal, Serena; Davies, Helen; Staaf, Johan; Ramakrishna, Manasa; Glodzik, Dominik; Zou, Xueqing; Martincorena, Inigo; Alexandrov, Ludmil B.; Martin, Sancha; Wedge, David C. et al.. 2019, Nature.
https://doi.org/10.1038/s41586-019-0883-2 (Errata)
Correction to: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors (Nature Communications, (2017), 8, 1, (1221), 10.1038/s41467-017-01355-0). Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason J.; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R. et al.. 2019, Nature Communications.
https://doi.org/10.1038/s41467-019-08512-7 (Errata)
Correction to: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors (Nature Communications, (2017), 8, 1, (1221), 10.1038/s41467-017-01355-0). Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason J.; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R. et al.. 2019, Nature Communications.
https://doi.org/10.1038/s41467-019-08512-7 (Errata)
Deep profiling of genetic aberrations and clonal evolution in follicular lymphoma. Bai, Baoyan; Vodák, Daniel; Nakken, Sigve; Wise, Jillian; Blaker, Yngvild Nuvin; Lingjærde, Ole Christian; Brodtkorb, Marianne; Hilden, Vera Irene; Trøen, Gunhild; Lorenz, Susanne et al.. 2019, Blood.
https://doi.org/10.1182/blood-2019-128403 (Abstract)
Deep profiling of genetic aberrations and clonal evolution in follicular lymphoma. Bai, Baoyan; Vodák, Daniel; Nakken, Sigve; Wise, Jillian; Blaker, Yngvild Nuvin; Lingjærde, Ole Christian; Brodtkorb, Marianne; Hilden, Vera Irene; Trøen, Gunhild; Lorenz, Susanne et al.. 2019, Blood.
https://doi.org/10.1182/blood-2019-128403 (Abstract)
Diagnosing adenomyosis with MRI: a prospective study revisiting the junctional zone thickness cutoff of 12 mm as a diagnostic marker. Tellum, Tina; MATIC, GORDANA; Dormagen, Johann Baptist; Nygård, Ståle; Viktil, Ellen; Qvigstad, Erik & Lieng, Marit. 2019, European Radiology.
https://doi.org/10.1007/s00330-019-06308-3 (Academic article)
Diagnosing adenomyosis with MRI: a prospective study revisiting the junctional zone thickness cutoff of 12 mm as a diagnostic marker. Tellum, Tina; MATIC, GORDANA; Dormagen, Johann Baptist; Nygård, Ståle; Viktil, Ellen; Qvigstad, Erik & Lieng, Marit. 2019, European Radiology.
https://doi.org/10.1007/s00330-019-06308-3 (Academic article)
Diagnostic Profiling of the Human Public IgM Repertoire With Scalable Mimotope Libraries. Pashov, Anastas; Shivarov, Velizar; Hadzhieva, Maya; Kostov, Victor; Ferdinandov, Dilyan; Heintz, Karen Marie; Pashova, Shina; Todorova, Milena; Vassilev, Tchavdar; Kieber-Emmons, Thomas et al.. 2019, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2019.02796 (Academic article)
Diagnostic Profiling of the Human Public IgM Repertoire With Scalable Mimotope Libraries. Pashov, Anastas; Shivarov, Velizar; Hadzhieva, Maya; Kostov, Victor; Ferdinandov, Dilyan; Heintz, Karen Marie; Pashova, Shina; Todorova, Milena; Vassilev, Tchavdar; Kieber-Emmons, Thomas et al.. 2019, Frontiers in Immunology.
https://doi.org/10.3389/fimmu.2019.02796 (Academic article)
Erratum: A map of direct TF-DNA interactions in the human genome (Nucleic acids research (2019) 47 4 (e21)). Gheorghe, Marius; Sandve, Geir Kjetil Ferkingstad; Khan, Aziz; Chèneby, Jeanne; Ballester, Benoit & Mathelier, Anthony. 2019, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkz582 (Errata)
Erratum: A map of direct TF-DNA interactions in the human genome (Nucleic acids research (2019) 47 4 (e21)). Gheorghe, Marius; Sandve, Geir Kjetil Ferkingstad; Khan, Aziz; Chèneby, Jeanne; Ballester, Benoit & Mathelier, Anthony. 2019, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkz582 (Errata)
Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2019, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1006731 (Academic article)
Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2019, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1006731 (Academic article)
Integrative genomic analysis of peritoneal malignant mesothelioma: Understanding a case with extraordinary chemotherapy response. Lund-Andersen, Christin; Nakken, Sigve; Nygård, Ståle; Fromm, Bastian; Aasheim, Lars Birger; Davidson, Ben; Julsrud, Lars; Abrahamsen, Torveig Weum; Kristensen, Annette Torgunrud; Dybdahl, Brit et al.. 2019, Cold Spring Harbor Molecular Case Studies.
https://doi.org/10.1101/mcs.a003566 (Academic article)
Integrative genomic analysis of peritoneal malignant mesothelioma: Understanding a case with extraordinary chemotherapy response. Lund-Andersen, Christin; Nakken, Sigve; Nygård, Ståle; Fromm, Bastian; Aasheim, Lars Birger; Davidson, Ben; Julsrud, Lars; Abrahamsen, Torveig Weum; Kristensen, Annette Torgunrud; Dybdahl, Brit et al.. 2019, Cold Spring Harbor Molecular Case Studies.
https://doi.org/10.1101/mcs.a003566 (Academic article)
Lack of association between screening interval and cancer stage in Lynch syndrome may be accounted for by over-diagnosis; A prospective Lynch syndrome database report. Seppälä, Toni T.; Ahadova, Aysel; Dominguez-Valentin, Mev; Macrae, Finlay; Evans, D. Gareth; Therkildsen, Christina; Sampson, Julian; Scott, Rodney; Burn, John; Moslein, Gabriela et al.. 2019, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-019-0106-8 (Academic article)
Lack of association between screening interval and cancer stage in Lynch syndrome may be accounted for by over-diagnosis; A prospective Lynch syndrome database report. Seppälä, Toni T.; Ahadova, Aysel; Dominguez-Valentin, Mev; Macrae, Finlay; Evans, D. Gareth; Therkildsen, Christina; Sampson, Julian; Scott, Rodney; Burn, John; Moslein, Gabriela et al.. 2019, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-019-0106-8 (Academic article)
Long-term effects on survival after a 1-year multifactorial vascular risk factor intervention after stroke or TIA: Secondary analysis of a randomized controlled trial, a 7-year follow-up study. Hagberg, Guri; Fure, Brynjar; Sandset, Else Charlotte; Thommessen, Bente; Ihle-Hansen, Håkon; Øksengård, Anne Rita; Nygård, Ståle; Wyller, Torgeir Bruun & Ihle-Hansen, Hege. 2019, Vascular Health and Risk Management.
https://doi.org/10.2147/VHRM.S191873 (Academic article)
Long-term effects on survival after a 1-year multifactorial vascular risk factor intervention after stroke or TIA: Secondary analysis of a randomized controlled trial, a 7-year follow-up study. Hagberg, Guri; Fure, Brynjar; Sandset, Else Charlotte; Thommessen, Bente; Ihle-Hansen, Håkon; Øksengård, Anne Rita; Nygård, Ståle; Wyller, Torgeir Bruun & Ihle-Hansen, Hege. 2019, Vascular Health and Risk Management.
https://doi.org/10.2147/VHRM.S191873 (Academic article)
MirGeneDB 2.0: the metazoan microRNA complement . Fromm, Bastian; Domanska, Diana Ewa; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind et al.. 2019, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkz885 (Academic article)
MirGeneDB 2.0: the metazoan microRNA complement . Fromm, Bastian; Domanska, Diana Ewa; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind et al.. 2019, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkz885 (Academic article)
miRNA expression changes during the course of neoadjuvant bevacizumab and chemotherapy treatment in breast cancer. Lindholm, Evita Maria; Aure, Miriam Ragle; Haugen, Mads Haugland; Sahlberg, Kristine Kleivi; Kristensen, Vessela N.; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian & Engebråten, Olav. 2019, Molecular Oncology.
https://doi.org/10.1002/1878-0261.12561 (Academic article)
miRNA expression changes during the course of neoadjuvant bevacizumab and chemotherapy treatment in breast cancer. Lindholm, Evita Maria; Aure, Miriam Ragle; Haugen, Mads Haugland; Sahlberg, Kristine Kleivi; Kristensen, Vessela N.; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian & Engebråten, Olav. 2019, Molecular Oncology.
https://doi.org/10.1002/1878-0261.12561 (Academic article)
Non-invasive diagnosis of adenomyosis: a structured review and meta-analysis of diagnostic accuracy. Tellum, Tina; Nygård, Ståle & Lieng, Marit. 2019, Journal of minimally invasive gynecology.
https://doi.org/10.1016/j.jmig.2019.11.001 (Academic literature review)
Non-invasive diagnosis of adenomyosis: a structured review and meta-analysis of diagnostic accuracy. Tellum, Tina; Nygård, Ståle & Lieng, Marit. 2019, Journal of minimally invasive gynecology.
https://doi.org/10.1016/j.jmig.2019.11.001 (Academic literature review)
PathTracer: High-sensitivity detection of differential pathway activity in tumours. Nygård, Ståle; Lingjærde, Ole Christian; Caldas, Carlos; Hovig, Eivind; Børresen-Dale, Anne-Lise; Helland, Åslaug & Haakensen, Vilde Drageset. 2019, Scientific Reports.
https://doi.org/10.1038/s41598-019-52529-3 (Academic article)
PathTracer: High-sensitivity detection of differential pathway activity in tumours. Nygård, Ståle; Lingjærde, Ole Christian; Caldas, Carlos; Hovig, Eivind; Børresen-Dale, Anne-Lise; Helland, Åslaug & Haakensen, Vilde Drageset. 2019, Scientific Reports.
https://doi.org/10.1038/s41598-019-52529-3 (Academic article)
Predictors for Favorable Cognitive Outcome Post-Stroke: A-Seven-Year Follow-Up Study. Hagberg, Guri; Fure, Brynjar; Thommessen, Bente; Ihle-Hansen, Håkon; Øksengård, Anne Rita; Nygård, Ståle; Pendlebury, Sarah T.; Beyer, Mona K.; Wyller, Torgeir Bruun & Ihle-Hansen, Hege. 2019, Dementia and Geriatric Cognitive Disorders.
https://doi.org/10.1159/000501850 (Academic article)
Predictors for Favorable Cognitive Outcome Post-Stroke: A-Seven-Year Follow-Up Study. Hagberg, Guri; Fure, Brynjar; Thommessen, Bente; Ihle-Hansen, Håkon; Øksengård, Anne Rita; Nygård, Ståle; Pendlebury, Sarah T.; Beyer, Mona K.; Wyller, Torgeir Bruun & Ihle-Hansen, Hege. 2019, Dementia and Geriatric Cognitive Disorders.
https://doi.org/10.1159/000501850 (Academic article)
Responsiveness to PD-1 Blockade in End-Stage Colon Cancer with Gene Locus 9p24.1 Copy-Number Gain. Ree, Anne Hansen; Nygaard, Vigdis; Russnes, Hege Elisabeth Giercksky; Heinrich, Daniel; Nygaard, Vegard; Johansen, Christin; Bergheim, Inger Riise; Hovig, Eivind; Beiske, Klaus; Negård, Anne et al.. 2019, Cancer immunology research.
https://doi.org/10.1158/2326-6066.CIR-18-0777 (Academic article)
Responsiveness to PD-1 Blockade in End-Stage Colon Cancer with Gene Locus 9p24.1 Copy-Number Gain. Ree, Anne Hansen; Nygaard, Vigdis; Russnes, Hege Elisabeth Giercksky; Heinrich, Daniel; Nygaard, Vegard; Johansen, Christin; Bergheim, Inger Riise; Hovig, Eivind; Beiske, Klaus; Negård, Anne et al.. 2019, Cancer immunology research.
https://doi.org/10.1158/2326-6066.CIR-18-0777 (Academic article)
Results of multigene panel testing in familial cancer cases without genetic cause demonstrated by single gene testing. Dominguez-Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodák, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Holth, Arild; Capellá, Gabriel M. et al.. 2019, Scientific Reports.
https://doi.org/10.1038/s41598-019-54517-z (Academic article)
Results of multigene panel testing in familial cancer cases without genetic cause demonstrated by single gene testing. Dominguez-Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodák, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Holth, Arild; Capellá, Gabriel M. et al.. 2019, Scientific Reports.
https://doi.org/10.1038/s41598-019-54517-z (Academic article)
Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort. Balaban, Gabriel; Halliday, Brian P; Bai, Wenjia; Porter, Bradley; Malvuccio, Carlotta; Lamata, Pablo; Rinaldi, Christopher Aldo; Plank, Gernot; Rueckert, Daniel; Prasad, Sanjay Kant et al.. 2019, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1007421 (Academic article)
Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort. Balaban, Gabriel; Halliday, Brian P; Bai, Wenjia; Porter, Bradley; Malvuccio, Carlotta; Lamata, Pablo; Rinaldi, Christopher Aldo; Plank, Gernot; Rueckert, Daniel; Prasad, Sanjay Kant et al.. 2019, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1007421 (Academic article)
Survival by colon cancer stage and screening interval in Lynch syndrome: A prospective Lynch syndrome database report. Dominguez-Valentin, Mev; Seppälä, Toni T.; Sampson, Julian R.; MacRae, Finlay; Winship, Ingrid; Evans, D. Gareth; Scott, Rodney J.; Burn, John; Möslein, Gabriela; Bernstein, Inge et al.. 2019, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-019-0127-3 (Academic article)
Survival by colon cancer stage and screening interval in Lynch syndrome: A prospective Lynch syndrome database report. Dominguez-Valentin, Mev; Seppälä, Toni T.; Sampson, Julian R.; MacRae, Finlay; Winship, Ingrid; Evans, D. Gareth; Scott, Rodney J.; Burn, John; Möslein, Gabriela; Bernstein, Inge et al.. 2019, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-019-0127-3 (Academic article)
The extracellular matrix proteoglycan lumican improves survival and counteracts cardiac dilatation and failure in mice subjected to pressure overload. Mohammadzadeh, Naiyereh; Lunde, Ida Gjervold; Andenæs, Kine; Strand, Mari Elen; Aronsen, Jan Magnus; Skrbic, Biljana; Marstein, Henriette; Bandlien, Caroline; Nygård, Ståle; Gorham, Joshua et al.. 2019, Scientific Reports.
https://doi.org/10.1038/s41598-019-45651-9 (Academic article)
The extracellular matrix proteoglycan lumican improves survival and counteracts cardiac dilatation and failure in mice subjected to pressure overload. Mohammadzadeh, Naiyereh; Lunde, Ida Gjervold; Andenæs, Kine; Strand, Mari Elen; Aronsen, Jan Magnus; Skrbic, Biljana; Marstein, Henriette; Bandlien, Caroline; Nygård, Ståle; Gorham, Joshua et al.. 2019, Scientific Reports.
https://doi.org/10.1038/s41598-019-45651-9 (Academic article)
The immune microenvironment in non‐small cell lung cancer is predictive of prognosis after surgery. Øjlert, Åsa Kristina; Halvorsen, Ann Rita; Nebdal, Daniel J.H.; Lund-Iversen, Marius; Solberg, Steinar; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2019, Molecular Oncology.
https://doi.org/10.1002/1878-0261.12475 (Academic article)
The immune microenvironment in non‐small cell lung cancer is predictive of prognosis after surgery. Øjlert, Åsa Kristina; Halvorsen, Ann Rita; Nebdal, Daniel J.H.; Lund-Iversen, Marius; Solberg, Steinar; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2019, Molecular Oncology.
https://doi.org/10.1002/1878-0261.12475 (Academic article)
Total circulating cell-free DNA as a prognostic biomarker in metastatic colorectal cancer before first-line oxaliplatin-based chemotherapy. Hamfjord, Julian; Guren, Tormod Kyrre; Dajani, Olav; Johansen, Julia Sidenius; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Lingjærde, Ole Christian; Tveit, Magne Kjell; Kure, Elin Wenche Hegland et al.. 2019, Annals of Oncology.
https://doi.org/10.1093/annonc/mdz139 (Academic article)
Total circulating cell-free DNA as a prognostic biomarker in metastatic colorectal cancer before first-line oxaliplatin-based chemotherapy. Hamfjord, Julian; Guren, Tormod Kyrre; Dajani, Olav; Johansen, Julia Sidenius; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Lingjærde, Ole Christian; Tveit, Magne Kjell; Kure, Elin Wenche Hegland et al.. 2019, Annals of Oncology.
https://doi.org/10.1093/annonc/mdz139 (Academic article)
Transcriptional profiling of human intestinal plasma cells reveals effector functions beyond antibody production. Snir, Omri; Kanduri, Srinivasa Kalyana Chakravarthi; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Sollid, Ludvig Magne. 2019, United European Gastroenterology journal.
https://doi.org/10.1177/2050640619862461 (Academic article)
Transcriptional profiling of human intestinal plasma cells reveals effector functions beyond antibody production. Snir, Omri; Kanduri, Srinivasa Kalyana Chakravarthi; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Sollid, Ludvig Magne. 2019, United European Gastroenterology journal.
https://doi.org/10.1177/2050640619862461 (Academic article)
2018
Ancient genomes from Iceland reveal the making of a human population. Ebenesersdóttir, Sigríður Sunna; Sandoval-Velasco, Marcela; Gunnarsdóttir, Ellen D.; Jagadeesan, Anuradha; Guðmundsdóttir, Valdís B.; Thordardóttir, Elísabet L.; Einarsdóttir, Margrét S.; Moore, Kristjan H. S.; Sigurðsson, Ásgeir; Magnúsdóttir, Droplaug N. et al.. 2018, Science.
https://doi.org/10.1126/science.aar2625 (Academic article)
Ancient genomes from Iceland reveal the making of a human population. Ebenesersdóttir, Sigríður Sunna; Sandoval-Velasco, Marcela; Gunnarsdóttir, Ellen D.; Jagadeesan, Anuradha; Guðmundsdóttir, Valdís B.; Thordardóttir, Elísabet L.; Einarsdóttir, Margrét S.; Moore, Kristjan H. S.; Sigurðsson, Ásgeir; Magnúsdóttir, Droplaug N. et al.. 2018, Science.
https://doi.org/10.1126/science.aar2625 (Academic article)
Artesunate shows potent anti-tumor activity in B-cell lymphoma. Våtsveen, Thea Kristin; Myhre, Marit Renee; Steen, Chloe Beate; Wälchli, Sébastien; Lingjærde, Ole Christian; Bai, Baoyan; Dillard, Pierre; Theodossiou, Theodossis; Holien, Toril; Sundan, Anders et al.. 2018, Journal of Hematology & Oncology.
https://doi.org/10.1186/s13045-018-0561-0 (Academic article)
Artesunate shows potent anti-tumor activity in B-cell lymphoma. Våtsveen, Thea Kristin; Myhre, Marit Renee; Steen, Chloe Beate; Wälchli, Sébastien; Lingjærde, Ole Christian; Bai, Baoyan; Dillard, Pierre; Theodossiou, Theodossis; Holien, Toril; Sundan, Anders et al.. 2018, Journal of Hematology & Oncology.
https://doi.org/10.1186/s13045-018-0561-0 (Academic article)
Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason J.; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R. et al.. 2018, Nature Communications.
https://doi.org/10.1038/s41467-018-07842-2 (Errata)
Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason J.; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R. et al.. 2018, Nature Communications.
https://doi.org/10.1038/s41467-018-07842-2 (Errata)
Blood pressure variability and risk of cardiovascular events and death in patients with hypertension and different baseline risks. Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre; Julius, Stevo; Hua, Tsushung A.; Rothwell, Peter M.; Mancia, Giuseppe; Parati, Gianfranco; Weber, Michael A. & Berge, Eivind. 2018, European Heart Journal.
https://doi.org/10.1093/eurheartj/ehx760 (Academic article)
Blood pressure variability and risk of cardiovascular events and death in patients with hypertension and different baseline risks. Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre; Julius, Stevo; Hua, Tsushung A.; Rothwell, Peter M.; Mancia, Giuseppe; Parati, Gianfranco; Weber, Michael A. & Berge, Eivind. 2018, European Heart Journal.
https://doi.org/10.1093/eurheartj/ehx760 (Academic article)
Cachexia does not induce loss of myonuclei or muscle fibres during xenografted prostate cancer in mice. Winje, Ivan; Sheng, Xia; Hansson, Kenth-Arne; Solbrå, Andreas Våvang; Tennøe, Simen; Saatcioglu, Fahri; Bruusgaard, Jo C. & Gundersen, Kristian. 2018, Acta Physiologica.
https://doi.org/10.1111/apha.13204 (Academic article)
Cachexia does not induce loss of myonuclei or muscle fibres during xenografted prostate cancer in mice. Winje, Ivan; Sheng, Xia; Hansson, Kenth-Arne; Solbrå, Andreas Våvang; Tennøe, Simen; Saatcioglu, Fahri; Bruusgaard, Jo C. & Gundersen, Kristian. 2018, Acta Physiologica.
https://doi.org/10.1111/apha.13204 (Academic article)
Cancer risk and survival in path_MMR carriers by gene and gender up to 75 years of age: a report from the Prospective Lynch Syndrome Database. Møller, Pål; Seppälä, Toni T.; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paulo; Evans, D. Gareth; Lindblom, Annika; Macrae, Finlay; Blanco, Ignacio; Sijmons, Rolf H. et al.. 2018, Gut.
https://doi.org/10.1136/gutjnl-2017-314057 (Academic article)
Cancer risk and survival in path_MMR carriers by gene and gender up to 75 years of age: a report from the Prospective Lynch Syndrome Database. Møller, Pål; Seppälä, Toni T.; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paulo; Evans, D. Gareth; Lindblom, Annika; Macrae, Finlay; Blanco, Ignacio; Sijmons, Rolf H. et al.. 2018, Gut.
https://doi.org/10.1136/gutjnl-2017-314057 (Academic article)
Centrosomal ALIX regulates mitotic spindle orientation by modulating astral microtubule dynamics. Malerød, Lene; Le Borgne, Roland; Lie-Jensen, Anette Christensen; Eikenes, Åsmund Husabø; Brech, Andreas; Liestøl, Knut; Stenmark, Harald & Haglund, Kaisa. 2018, EMBO Journal.
https://doi.org/10.15252/embj.201797741 (Academic article)
Centrosomal ALIX regulates mitotic spindle orientation by modulating astral microtubule dynamics. Malerød, Lene; Le Borgne, Roland; Lie-Jensen, Anette Christensen; Eikenes, Åsmund Husabø; Brech, Andreas; Liestøl, Knut; Stenmark, Harald & Haglund, Kaisa. 2018, EMBO Journal.
https://doi.org/10.15252/embj.201797741 (Academic article)
Change in Cardiorespiratory Fitness and Risk of Stroke and Death.. Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind. 2018, Stroke.
https://doi.org/10.1161/STROKEAHA.118.021798 (Academic article)
Change in Cardiorespiratory Fitness and Risk of Stroke and Death.. Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind. 2018, Stroke.
https://doi.org/10.1161/STROKEAHA.118.021798 (Academic article)
Coloc-stats: A unified web interface to perform colocalization analysis of genomic features. Simovski, Boris; Kanduri, Srinivasa Kalyana Chakravarthi; Gundersen, Sveinung; Titov, Dmytro; Domanska, Diana Ewa; Bock, Christoph; Bossini-Castillo, Lara; Chikina, Maria; Favorov, Alexander; Layer, Ryan M. et al.. 2018, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gky474 (Academic article)
Coloc-stats: A unified web interface to perform colocalization analysis of genomic features. Simovski, Boris; Kanduri, Srinivasa Kalyana Chakravarthi; Gundersen, Sveinung; Titov, Dmytro; Domanska, Diana Ewa; Bock, Christoph; Bossini-Castillo, Lara; Chikina, Maria; Favorov, Alexander; Layer, Ryan M. et al.. 2018, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gky474 (Academic article)
Correction: A systematic comparison of copy number alterations in four types of female cancer. Kaveh, Fatemeh; Baumbusch, Lars Oliver; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian; Edvardsen, Hege; Kristensen, Vessela N. & Solvang, Hiroko Kato. 2018, BMC Cancer.
https://doi.org/10.1186/s12885-017-3766-7 (Errata)
Correction: A systematic comparison of copy number alterations in four types of female cancer. Kaveh, Fatemeh; Baumbusch, Lars Oliver; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian; Edvardsen, Hege; Kristensen, Vessela N. & Solvang, Hiroko Kato. 2018, BMC Cancer.
https://doi.org/10.1186/s12885-017-3766-7 (Errata)
Data Mining for Patient Friendly Apnea Detection. Kristiansen, Stein; Sønsteby Hugaas, Mari; Goebel, Vera Hermine; Plagemann, Thomas Peter; Nikolaidis, Konstantinos & Liestøl, Knut. 2018, IEEE Access.
https://doi.org/10.1109/ACCESS.2018.2882270 (Academic article)
Data Mining for Patient Friendly Apnea Detection. Kristiansen, Stein; Sønsteby Hugaas, Mari; Goebel, Vera Hermine; Plagemann, Thomas Peter; Nikolaidis, Konstantinos & Liestøl, Knut. 2018, IEEE Access.
https://doi.org/10.1109/ACCESS.2018.2882270 (Academic article)
Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. Risnes, Louise Fremgaard; Christophersen, Asbjørn; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Sandve, Geir Kjetil; Sarna, Vikas Kumar; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang & Sollid, Ludvig Magne. 2018, Journal of Clinical Investigation.
https://doi.org/10.1172/JCI98819 (Academic article)
Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. Risnes, Louise Fremgaard; Christophersen, Asbjørn; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Sandve, Geir Kjetil; Sarna, Vikas Kumar; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang & Sollid, Ludvig Magne. 2018, Journal of Clinical Investigation.
https://doi.org/10.1172/JCI98819 (Academic article)
Evaluating different breast tumor progression models using screening data. Westvik, Asbjørn; Weedon-Fekjær, Harald; Mæhlen, Jan & Liestøl, Knut. 2018, BMC Cancer.
https://doi.org/10.1186/s12885-018-4130-2 (Academic article)
Evaluating different breast tumor progression models using screening data. Westvik, Asbjørn; Weedon-Fekjær, Harald; Mæhlen, Jan & Liestøl, Knut. 2018, BMC Cancer.
https://doi.org/10.1186/s12885-018-4130-2 (Academic article)
Experimental directory structure (Exdir): An alternative to HDF5 without introducing a new file format. Dragly, Svenn-Arne; Mobarhan, Milad; Lepperød, Mikkel Elle; Tennøe, Simen; Fyhn, Marianne; Hafting, Torkel & Malthe-Sørenssen, Anders. 2018, Frontiers in Neuroinformatics.
https://doi.org/10.3389/fninf.2018.00016 (Academic article)
Experimental directory structure (Exdir): An alternative to HDF5 without introducing a new file format. Dragly, Svenn-Arne; Mobarhan, Milad; Lepperød, Mikkel Elle; Tennøe, Simen; Fyhn, Marianne; Hafting, Torkel & Malthe-Sørenssen, Anders. 2018, Frontiers in Neuroinformatics.
https://doi.org/10.3389/fninf.2018.00016 (Academic article)
Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. Yao, Ying; Zia, Asima; Wyrozemski, Lukasz Adam; Lindeman, Ida; Sandve, Geir Kjetil & Qiao, Shuo Wang. 2018, PLOS ONE.
https://doi.org/10.1371/journal.pone.0208484 (Academic article)
Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. Yao, Ying; Zia, Asima; Wyrozemski, Lukasz Adam; Lindeman, Ida; Sandve, Geir Kjetil & Qiao, Shuo Wang. 2018, PLOS ONE.
https://doi.org/10.1371/journal.pone.0208484 (Academic article)
Filesystem Front-end for Seamless Job Management in Sensitive Data e-Infrastructures and Cloud Federation. Azab, Abdulrahman; Meling, Hein; Hovig, Eivind & Pursula, Antti. 2018, IEEE (Institute of Electrical and Electronics Engineers).
https://doi.org/10.1109/BigData.2018.8622144 (Academic chapter/article/Conference paper)
Filesystem Front-end for Seamless Job Management in Sensitive Data e-Infrastructures and Cloud Federation. Azab, Abdulrahman; Meling, Hein; Hovig, Eivind & Pursula, Antti. 2018, IEEE (Institute of Electrical and Electronics Engineers).
https://doi.org/10.1109/BigData.2018.8622144 (Academic chapter/article/Conference paper)
From colorectal cancer pattern to the characterization of individuals at risk: Picture for genetic research in Latin America. Vaccaro, Carlos Alberto; López‐Kostner, Francisco; Della Valle, Adriana; Palmero, Edenir Inêz; Rossi, Benedito Mauro; Antelo, Marina; Solano, Angela; Carraro, Dirce Maria; Forones, Nora Manoukian; Bohorquez, Mabel et al.. 2018, International Journal of Cancer.
https://doi.org/10.1002/ijc.31920 (Academic literature review)
From colorectal cancer pattern to the characterization of individuals at risk: Picture for genetic research in Latin America. Vaccaro, Carlos Alberto; López‐Kostner, Francisco; Della Valle, Adriana; Palmero, Edenir Inêz; Rossi, Benedito Mauro; Antelo, Marina; Solano, Angela; Carraro, Dirce Maria; Forones, Nora Manoukian; Bohorquez, Mabel et al.. 2018, International Journal of Cancer.
https://doi.org/10.1002/ijc.31920 (Academic literature review)
Genetic variants of prospectively demonstrated phenocopies in BRCA1/2 kindreds. Dominguez Valentin, Mev; Evans, D. Gareth R.; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra et al.. 2018, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-018-0086-0 (Academic article)
Genetic variants of prospectively demonstrated phenocopies in BRCA1/2 kindreds. Dominguez Valentin, Mev; Evans, D. Gareth R.; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra et al.. 2018, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-018-0086-0 (Academic article)
Human ectoparasites and the spread of plague in Europe during the Second Pandemic. Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn. 2018, Proceedings of the National Academy of Sciences of the United States of America.
https://doi.org/10.1073/pnas.1715640115 (Academic article)
Human ectoparasites and the spread of plague in Europe during the Second Pandemic. Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn. 2018, Proceedings of the National Academy of Sciences of the United States of America.
https://doi.org/10.1073/pnas.1715640115 (Academic article)
Identification of genetic variants for clinical management of familial colorectal tumors. Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål et al.. 2018, BMC Medical Genetics.
https://doi.org/10.1186/s12881-018-0533-9 (Academic article)
Identification of genetic variants for clinical management of familial colorectal tumors. Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål et al.. 2018, BMC Medical Genetics.
https://doi.org/10.1186/s12881-018-0533-9 (Academic article)
Intratumor heterogeneity defines treatment-resistant HER2+ breast tumors. Rye, Inga Hansine; Trinh, Anne; Sætersdal, Anna Barbro; Nebdal, Daniel J.H.; Lingjærde, Ole Christian; Almendro, Vanessa; Polyak, Kornelia; Børresen-Dale, Anne-Lise; Helland, Åslaug; Markowetz, Florian et al.. 2018, Molecular Oncology.
https://doi.org/10.1002/1878-0261.12375 (Academic article)
Intratumor heterogeneity defines treatment-resistant HER2+ breast tumors. Rye, Inga Hansine; Trinh, Anne; Sætersdal, Anna Barbro; Nebdal, Daniel J.H.; Lingjærde, Ole Christian; Almendro, Vanessa; Polyak, Kornelia; Børresen-Dale, Anne-Lise; Helland, Åslaug; Markowetz, Florian et al.. 2018, Molecular Oncology.
https://doi.org/10.1002/1878-0261.12375 (Academic article)
Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis. Domanska, Diana Ewa; Kanduri, Srinivasa Kalyana Chakravarthi; Simovski, Boris & Sandve, Geir Kjetil. 2018, BMC Bioinformatics.
https://doi.org/10.1186/s12859-018-2438-1 (Academic article)
Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis. Domanska, Diana Ewa; Kanduri, Srinivasa Kalyana Chakravarthi; Simovski, Boris & Sandve, Geir Kjetil. 2018, BMC Bioinformatics.
https://doi.org/10.1186/s12859-018-2438-1 (Academic article)
Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0. Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute. 2018, Frontiers in Neuroinformatics.
https://doi.org/10.3389/fninf.2018.00092 (Academic article)
Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0. Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute. 2018, Frontiers in Neuroinformatics.
https://doi.org/10.3389/fninf.2018.00092 (Academic article)
N-glycan signatures identified in tumor interstitial fluid and serum of breast cancer patients: association with tumor biology and clinical outcome. Terkelsen, Thilde; Haakensen, Vilde Drageset; Saldova, Radka; Gromov, Pavel; Hansen, Merete Kjær; Stockmann, Henning; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise; Papaleo, Elena; Helland, Åslaug et al.. 2018, Molecular Oncology.
https://doi.org/10.1002/1878-0261.12312 (Academic article)
N-glycan signatures identified in tumor interstitial fluid and serum of breast cancer patients: association with tumor biology and clinical outcome. Terkelsen, Thilde; Haakensen, Vilde Drageset; Saldova, Radka; Gromov, Pavel; Hansen, Merete Kjær; Stockmann, Henning; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise; Papaleo, Elena; Helland, Åslaug et al.. 2018, Molecular Oncology.
https://doi.org/10.1002/1878-0261.12312 (Academic article)
Neutral tumor evolution?. Tarabichi, Maxime; Martincorena, Iñigo; Gerstung, Moritz; Leroi, Armand M.; Markowetz, Florian; Spellman, Paul; Morris, Quaid D; Lingjærde, Ole Christian; Wedge, David C. & Van Loo, Peter. 2018, Nature Genetics.
https://doi.org/10.1038/s41588-018-0258-x (Letter to the editor)
Neutral tumor evolution?. Tarabichi, Maxime; Martincorena, Iñigo; Gerstung, Moritz; Leroi, Armand M.; Markowetz, Florian; Spellman, Paul; Morris, Quaid D; Lingjærde, Ole Christian; Wedge, David C. & Van Loo, Peter. 2018, Nature Genetics.
https://doi.org/10.1038/s41588-018-0258-x (Letter to the editor)
Norwegian e-Infrastructure for Life Sciences (NeLS). Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš et al.. 2018, F1000 Research.
https://doi.org/10.5256/f1000research.16472.r35600 (Academic article)
Norwegian e-Infrastructure for Life Sciences (NeLS). Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš et al.. 2018, F1000 Research.
https://doi.org/10.5256/f1000research.16472.r35600 (Academic article)
Patterns of genomic evolution in advanced melanoma. Birkeland, Einar Elvbakken; Zhang, Shan; Poduval, Deepak; Geisler, Jürgen; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda; Hovig, Eivind; Myklebost, Ola; Knappskog, Stian et al.. 2018, Nature Communications.
https://doi.org/10.1038/s41467-018-05063-1 (Academic article)
Patterns of genomic evolution in advanced melanoma. Birkeland, Einar Elvbakken; Zhang, Shan; Poduval, Deepak; Geisler, Jürgen; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda; Hovig, Eivind; Myklebost, Ola; Knappskog, Stian et al.. 2018, Nature Communications.
https://doi.org/10.1038/s41467-018-05063-1 (Academic article)
Personal Cancer Genome Reporter: Variant interpretation report for precision oncology. Nakken, Sigve; Fournous, Ghislain; Vodak, Daniel; Aasheim, Lars Birger; Myklebost, Ola & Hovig, Eivind. 2018, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btx817 (Short communication)
Personal Cancer Genome Reporter: Variant interpretation report for precision oncology. Nakken, Sigve; Fournous, Ghislain; Vodak, Daniel; Aasheim, Lars Birger; Myklebost, Ola & Hovig, Eivind. 2018, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btx817 (Short communication)
Physical fitness is a modifiable predictor of early cardiovascular death: A 35-year follow-up study of 2014 healthy middle-aged men. Engeseth, Kristian; Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Grundvold, Irene; Liestøl, Knut; Kjeldsen, Sverre; Bodegard, Johan; Erikssen, Jan Emil; Gjesdal, Knut & Skretteberg, Torger. 2018, European Journal of Preventive Cardiology (EJPC).
https://doi.org/10.1177/2047487318793459 (Academic article)
Physical fitness is a modifiable predictor of early cardiovascular death: A 35-year follow-up study of 2014 healthy middle-aged men. Engeseth, Kristian; Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Grundvold, Irene; Liestøl, Knut; Kjeldsen, Sverre; Bodegard, Johan; Erikssen, Jan Emil; Gjesdal, Knut & Skretteberg, Torger. 2018, European Journal of Preventive Cardiology (EJPC).
https://doi.org/10.1177/2047487318793459 (Academic article)
Reply to Park et al.: Human ectoparasite transmission of plague during the Second Pandemic is still plausible. Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn. 2018, Proceedings of the National Academy of Sciences of the United States of America.
https://doi.org/10.1073/pnas.1810221115 (Letter to the editor)
Reply to Park et al.: Human ectoparasite transmission of plague during the Second Pandemic is still plausible. Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn. 2018, Proceedings of the National Academy of Sciences of the United States of America.
https://doi.org/10.1073/pnas.1810221115 (Letter to the editor)
Response to letters from Torp-Pedersen and colleagues and de Courson and colleagues. Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre & Berge, Eivind. 2018, European Heart Journal.
https://doi.org/10.1093/eurheartj/ehy605 (Reader opinion piece)
Response to letters from Torp-Pedersen and colleagues and de Courson and colleagues. Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre & Berge, Eivind. 2018, European Heart Journal.
https://doi.org/10.1093/eurheartj/ehy605 (Reader opinion piece)
Retraction Note to: The BRCA2 variant c.68–7 T > A is associated with breast cancer. Møller, Pål & Hovig, Eivind. 2018, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-018-0093-1 (Errata)
Retraction Note to: The BRCA2 variant c.68–7 T > A is associated with breast cancer. Møller, Pål & Hovig, Eivind. 2018, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-018-0093-1 (Errata)
Sample-Index Misassignment Impacts Tumour Exome Sequencing. Vodak, Daniel; Lorenz, Susanne; Nakken, Sigve; Aasheim, Lars Birger; Holte, Harald; Bai, Baoyan; Myklebost, Ola; Meza, Leonardo Zepeda & Hovig, Eivind. 2018, Scientific Reports.
https://doi.org/10.1038/s41598-018-23563-4 (Academic article)
Sample-Index Misassignment Impacts Tumour Exome Sequencing. Vodak, Daniel; Lorenz, Susanne; Nakken, Sigve; Aasheim, Lars Birger; Holte, Harald; Bai, Baoyan; Myklebost, Ola; Meza, Leonardo Zepeda & Hovig, Eivind. 2018, Scientific Reports.
https://doi.org/10.1038/s41598-018-23563-4 (Academic article)
Survival in patients with univentricular hearts: The impact of right versus left ventricular morphology. Erikssen, Gunnar; Aboulhosn, Jamil; Lin, Jeannette; Liestøl, Knut; Estensen, Mette-Elise; Gjesdal, Ola; Skulstad, Helge; Døhlen, Gaute & Lindberg, Harald L. 2018, Open heart.
https://doi.org/10.1136/openhrt-2018-000902 (Academic article)
Survival in patients with univentricular hearts: The impact of right versus left ventricular morphology. Erikssen, Gunnar; Aboulhosn, Jamil; Lin, Jeannette; Liestøl, Knut; Estensen, Mette-Elise; Gjesdal, Ola; Skulstad, Helge; Døhlen, Gaute & Lindberg, Harald L. 2018, Open heart.
https://doi.org/10.1136/openhrt-2018-000902 (Academic article)
The MCL35 gene expression proliferation assay predicts high-risk MCL patients in a Norwegian cohort of younger patients given intensive first line therapy. Holte, Harald; Beiske, Klaus; Boyle, Merrill; Trøen, Gunhild; Blaker, Yngvild Nuvin; Myklebust, June; Kvaløy, Anne Sunniva; Rosenwald, Andreas; Lingjærde, Ole Christian; Rimsza, Lisa M. et al.. 2018, British Journal of Haematology.
https://doi.org/10.1111/bjh.15518 (Academic article)
The MCL35 gene expression proliferation assay predicts high-risk MCL patients in a Norwegian cohort of younger patients given intensive first line therapy. Holte, Harald; Beiske, Klaus; Boyle, Merrill; Trøen, Gunhild; Blaker, Yngvild Nuvin; Myklebust, June; Kvaløy, Anne Sunniva; Rosenwald, Andreas; Lingjærde, Ole Christian; Rimsza, Lisa M. et al.. 2018, British Journal of Haematology.
https://doi.org/10.1111/bjh.15518 (Academic article)
Time series analysis of neoadjuvant chemotherapy and bevacizumab-treated breast carcinomas reveals a systemic shift in genomic aberrations. Møller, Elen Kristine; Nord, Silje; Wedge, David C; Lingjærde, Ole Christian; Silwal-Pandit, Laxmi; Gythfeldt, Hedda; Vollan, Hans Kristian Moen; Fleischer, Thomas; Krohn, Marit; Schlichting, Ellen et al.. 2018, Genome Medicine.
https://doi.org/10.1186/s13073-018-0601-y (Academic article)
Time series analysis of neoadjuvant chemotherapy and bevacizumab-treated breast carcinomas reveals a systemic shift in genomic aberrations. Møller, Elen Kristine; Nord, Silje; Wedge, David C; Lingjærde, Ole Christian; Silwal-Pandit, Laxmi; Gythfeldt, Hedda; Vollan, Hans Kristian Moen; Fleischer, Thomas; Krohn, Marit; Schlichting, Ellen et al.. 2018, Genome Medicine.
https://doi.org/10.1186/s13073-018-0601-y (Academic article)
Total circulating cell-free DNA (cfDNA) as a prognostic biomarker in metastatic colorectal cancer prior to first-line oxaliplatin-based chemotherapy. Hamfjord, Julian; Guren, Tormod Kyrre; Dajani, Olav; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Christoffersen, Thoralf; Lingjærde, Ole Christian; Tveit, Magne Kjell; Kure, Elin Wenche Hegland et al.. 2018, Annals of Oncology.
https://doi.org/10.1093/annonc/mdy149.025 (Abstract)
Total circulating cell-free DNA (cfDNA) as a prognostic biomarker in metastatic colorectal cancer prior to first-line oxaliplatin-based chemotherapy. Hamfjord, Julian; Guren, Tormod Kyrre; Dajani, Olav; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Christoffersen, Thoralf; Lingjærde, Ole Christian; Tveit, Magne Kjell; Kure, Elin Wenche Hegland et al.. 2018, Annals of Oncology.
https://doi.org/10.1093/annonc/mdy149.025 (Abstract)
Uncertainpy: A Python toolbox for uncertainty quantification and sensitivity analysis in computational neuroscience. Tennøe, Simen; Halnes, Geir & Einevoll, Gaute. 2018, Frontiers in Neuroinformatics.
https://doi.org/10.3389/fninf.2018.00049 (Academic article)
Uncertainpy: A Python toolbox for uncertainty quantification and sensitivity analysis in computational neuroscience. Tennøe, Simen; Halnes, Geir & Einevoll, Gaute. 2018, Frontiers in Neuroinformatics.
https://doi.org/10.3389/fninf.2018.00049 (Academic article)
2017
A survey of the clinicopathological and molecular characteristics of patients with suspected Lynch syndrome in Latin America. Rossi, Benedito Mauro; Palmero, Edenir Inêz; López-Kostner, Francisco; Sarroca, Carlos; Vaccaro, Carlos Alberto; Spirandelli, Florencia; Ashton-Prolla, Patricia; Rodriguez, Yenni; Galvão, Henrique de Campos Reis; Reis, Rui Manuel et al.. 2017, BMC Cancer.
https://doi.org/10.1186/s12885-017-3599-4 (Academic article)
A survey of the clinicopathological and molecular characteristics of patients with suspected Lynch syndrome in Latin America. Rossi, Benedito Mauro; Palmero, Edenir Inêz; López-Kostner, Francisco; Sarroca, Carlos; Vaccaro, Carlos Alberto; Spirandelli, Florencia; Ashton-Prolla, Patricia; Rodriguez, Yenni; Galvão, Henrique de Campos Reis; Reis, Rui Manuel et al.. 2017, BMC Cancer.
https://doi.org/10.1186/s12885-017-3599-4 (Academic article)
Assessing prescription drug abuse using functional Principal component analysis (FPCA) of wastewater data. Salvatore, Stefania; Røislien, Jo; Baz-Lomba, Jose A & Bramness, Jørgen G. 2017, Pharmacoepidemiology and Drug Safety.
https://doi.org/10.1002/pds.4127 (Academic article)
Assessing prescription drug abuse using functional Principal component analysis (FPCA) of wastewater data. Salvatore, Stefania; Røislien, Jo; Baz-Lomba, Jose A & Bramness, Jørgen G. 2017, Pharmacoepidemiology and Drug Safety.
https://doi.org/10.1002/pds.4127 (Academic article)
Bioinformatics approaches to profile the tumor microenvironment for immunotherapeutic discovery. Clancy, Trevor; dannenfelser, ruth; Troyanskaya, Olga G.; Malmberg, Karl-Johan; Hovig, Eivind & Kristensen, Vessela N.. 2017, Current pharmaceutical design.
https://doi.org/10.2174/1381612823666170710154936 (Academic article)
Bioinformatics approaches to profile the tumor microenvironment for immunotherapeutic discovery. Clancy, Trevor; dannenfelser, ruth; Troyanskaya, Olga G.; Malmberg, Karl-Johan; Hovig, Eivind & Kristensen, Vessela N.. 2017, Current pharmaceutical design.
https://doi.org/10.2174/1381612823666170710154936 (Academic article)
Breast cancer molecular stratification– from intrinsic subtypes to integrative clusters. Russnes, Hege Elisabeth Giercksky; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise & Caldas, Carlos. 2017, American Journal of Pathology.
https://doi.org/10.1016/j.ajpath.2017.04.022 (Academic article)
Breast cancer molecular stratification– from intrinsic subtypes to integrative clusters. Russnes, Hege Elisabeth Giercksky; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise & Caldas, Carlos. 2017, American Journal of Pathology.
https://doi.org/10.1016/j.ajpath.2017.04.022 (Academic article)
Chimeraviz: A tool for visualizing chimeric RNA. Lågstad, Stian; Zhao, Sen; Hoff, Andreas Midbøe; Johannessen, Bjarne; Lingjærde, Ole Christian & Skotheim, Rolf I.. 2017, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btx329 (Academic article)
Chimeraviz: A tool for visualizing chimeric RNA. Lågstad, Stian; Zhao, Sen; Hoff, Andreas Midbøe; Johannessen, Bjarne; Lingjærde, Ole Christian & Skotheim, Rolf I.. 2017, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btx329 (Academic article)
Colorectal cancer incidence in path_MLH1 carriers subjected to different follow-up protocols: A Prospective Lynch Syndrome Database report. Seppälä, Toni; Pylvänäinen, Kirsi; Evans, Dafydd Gareth; Järvinen, Heikki; Renkonen-Sinisalo, Laura; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Lindblom, Annika; Macrae, Finlay et al.. 2017, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-017-0078-5 (Academic article)
Colorectal cancer incidence in path_MLH1 carriers subjected to different follow-up protocols: A Prospective Lynch Syndrome Database report. Seppälä, Toni; Pylvänäinen, Kirsi; Evans, Dafydd Gareth; Järvinen, Heikki; Renkonen-Sinisalo, Laura; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Lindblom, Annika; Macrae, Finlay et al.. 2017, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-017-0078-5 (Academic article)
Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy. Salvatore, Stefania; Domanska, Diana Ewa; Wood, Mollie; Nordeng, Hedvig Marie Egeland & Sandve, Geir Kjetil. 2017, PLOS ONE.
https://doi.org/10.1371/journal.pone.0190101 (Academic article)
Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy. Salvatore, Stefania; Domanska, Diana Ewa; Wood, Mollie; Nordeng, Hedvig Marie Egeland & Sandve, Geir Kjetil. 2017, PLOS ONE.
https://doi.org/10.1371/journal.pone.0190101 (Academic article)
Coordinates and intervals in graph-based reference genomes. Rand, Knut Dagestad; Grytten, Ivar; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2017, BMC Bioinformatics.
https://doi.org/10.1186/s12859-017-1678-9 (Academic article)
Coordinates and intervals in graph-based reference genomes. Rand, Knut Dagestad; Grytten, Ivar; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2017, BMC Bioinformatics.
https://doi.org/10.1186/s12859-017-1678-9 (Academic article)
Differential Expression and Cell-Type Specificity of Perineuronal Nets in Hippocampus, Medial Entorhinal Cortex and Visual Cortex Examined in the Rat and Mouse. Lensjø, Kristian Kinden; Christensen, Ane Charlotte; Tennøe, Simen; Fyhn, Marianne & Hafting, Torkel. 2017, eNeuro.
https://doi.org/10.1523/ENEURO.0379-16.2017 (Academic article)
Differential Expression and Cell-Type Specificity of Perineuronal Nets in Hippocampus, Medial Entorhinal Cortex and Visual Cortex Examined in the Rat and Mouse. Lensjø, Kristian Kinden; Christensen, Ane Charlotte; Tennøe, Simen; Fyhn, Marianne & Hafting, Torkel. 2017, eNeuro.
https://doi.org/10.1523/ENEURO.0379-16.2017 (Academic article)
Distinct patterns of B-cell receptor signaling in non-Hodgkin lymphomas identified by single-cell profiling. Myklebust, June; Brody, Joshua; Kohrt, Holbrook E.; Kolstad, Arne; Czerwinski, Debra K; Waelchli, Sebastien; Green, Michael R.; Trøen, Gunhild; Liestøl, Knut; Beiske, Klaus et al.. 2017, Blood.
https://doi.org/10.1182/blood-2016-05-718494 (Academic article)
Distinct patterns of B-cell receptor signaling in non-Hodgkin lymphomas identified by single-cell profiling. Myklebust, June; Brody, Joshua; Kohrt, Holbrook E.; Kolstad, Arne; Czerwinski, Debra K; Waelchli, Sebastien; Green, Michael R.; Trøen, Gunhild; Liestøl, Knut; Beiske, Klaus et al.. 2017, Blood.
https://doi.org/10.1182/blood-2016-05-718494 (Academic article)
Erratum to: Exploring functional data analysis and wavelet principal component analysis on ecstasy (MDMA) wastewater data. Salvatore, Stefania; Bramness, Jørgen Gustav & Røislien, Jo. 2017, BMC Medical Research Methodology.
https://doi.org/10.1186/s12874-017-0311-y (Errata)
Erratum to: Exploring functional data analysis and wavelet principal component analysis on ecstasy (MDMA) wastewater data. Salvatore, Stefania; Bramness, Jørgen Gustav & Røislien, Jo. 2017, BMC Medical Research Methodology.
https://doi.org/10.1186/s12874-017-0311-y (Errata)
Exercise systolic blood pressure at moderate workload predicts cardiovascular disease and mortality through 35 years of follow-up in healthy, middle-aged men. Mariampillai, Julian Eek; Engeseth, Kristian; Kjeldsen, Sverre Erik; Grundvold, Irene; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2017, Blood Pressure.
https://doi.org/10.1080/08037051.2017.1291276 (Academic article)
Exercise systolic blood pressure at moderate workload predicts cardiovascular disease and mortality through 35 years of follow-up in healthy, middle-aged men. Mariampillai, Julian Eek; Engeseth, Kristian; Kjeldsen, Sverre Erik; Grundvold, Irene; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2017, Blood Pressure.
https://doi.org/10.1080/08037051.2017.1291276 (Academic article)
Fecal carriage of extended spectrum β-lactamase producing Escherichia coli and Klebsiella pneumoniae after urinary tract
infection - A three year prospective cohort
study. Jørgensen, Silje; Søraas, Arne Vasli; Sundsfjord, Arnfinn; Liestøl, Knut; Leegaard, Truls Michael & Jenum, Pål. 2017, PLOS ONE.
https://doi.org/10.1371/journal.pone.0173510 (Academic article)
Fecal carriage of extended spectrum β-lactamase producing Escherichia coli and Klebsiella pneumoniae after urinary tract
infection - A three year prospective cohort
study. Jørgensen, Silje; Søraas, Arne Vasli; Sundsfjord, Arnfinn; Liestøl, Knut; Leegaard, Truls Michael & Jenum, Pål. 2017, PLOS ONE.
https://doi.org/10.1371/journal.pone.0173510 (Academic article)
Genome build information is an essential part of genomic track files. Kanduri, Chakravarthi; Domanska, Diana; Hovig, Eivind & Sandve, Geir Kjetil. 2017, Genome Biology.
https://doi.org/10.1186/s13059-017-1312-1 (Letter to the editor)
Genome build information is an essential part of genomic track files. Kanduri, Chakravarthi; Domanska, Diana; Hovig, Eivind & Sandve, Geir Kjetil. 2017, Genome Biology.
https://doi.org/10.1186/s13059-017-1312-1 (Letter to the editor)
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn et al.. 2017, GigaScience.
https://doi.org/10.1093/gigascience/gix032 (Academic article)
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn et al.. 2017, GigaScience.
https://doi.org/10.1093/gigascience/gix032 (Academic article)
High number of kinome-mutations in non-small cell lung cancer is associated with reduced immune response and poor relapse-free survival. Helland, Åslaug; Brustugun, Odd Terje; Nakken, Sigve; Halvorsen, Ann Rita; Dønnem, Tom; Bremnes, Roy M.; Busund, Lill-Tove; Sun, Jinchang; Lorenz, Susanne; Solberg, Steinar et al.. 2017, International Journal of Cancer.
https://doi.org/10.1002/ijc.30726 (Academic article)
High number of kinome-mutations in non-small cell lung cancer is associated with reduced immune response and poor relapse-free survival. Helland, Åslaug; Brustugun, Odd Terje; Nakken, Sigve; Halvorsen, Ann Rita; Dønnem, Tom; Bremnes, Roy M.; Busund, Lill-Tove; Sun, Jinchang; Lorenz, Susanne; Solberg, Steinar et al.. 2017, International Journal of Cancer.
https://doi.org/10.1002/ijc.30726 (Academic article)
High-Throughput Single-Cell Analysis of B Cell Receptor
Usage among Autoantigen-Specific Plasma Cells in Celiac
Disease. Roy, Bishnudeo; Neumann, Ralf Stefan; Snir, Omri; Iversen, Rasmus; Sandve, Geir Kjetil; Lundin, Knut Erik Aslaksen & Sollid, Ludvig Magne. 2017, Journal of Immunology.
https://doi.org/10.4049/jimmunol.1700169 (Academic article)
High-Throughput Single-Cell Analysis of B Cell Receptor
Usage among Autoantigen-Specific Plasma Cells in Celiac
Disease. Roy, Bishnudeo; Neumann, Ralf Stefan; Snir, Omri; Iversen, Rasmus; Sandve, Geir Kjetil; Lundin, Knut Erik Aslaksen & Sollid, Ludvig Magne. 2017, Journal of Immunology.
https://doi.org/10.4049/jimmunol.1700169 (Academic article)
HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization. Meisal, Roger; Rounge, Trine Ballestad; Christiansen, Irene Kraus; Eieland, Alexander Kirkeby; Worren, Merete Molton; Molden, Tor; Kommedal, Øyvind; Hovig, Eivind; Leegaard, Truls Michael & Ambur, Ole Herman. 2017, PLOS ONE.
https://doi.org/10.1371/journal.pone.0169074 (Academic article)
HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization. Meisal, Roger; Rounge, Trine Ballestad; Christiansen, Irene Kraus; Eieland, Alexander Kirkeby; Worren, Merete Molton; Molden, Tor; Kommedal, Øyvind; Hovig, Eivind; Leegaard, Truls Michael & Ambur, Ole Herman. 2017, PLOS ONE.
https://doi.org/10.1371/journal.pone.0169074 (Academic article)
Implementing precision cancer medicine in the public health services of Norway: the diagnostic infrastructure and a cost estimate. Ree, Anne Hansen; Russnes, Hege Elisabeth Giercksky; Heinrich, Daniel; Dueland, Svein; Pedersen, Kjetil Boye; Nygaard, Vigdis; Silwal-Pandit, Laxmi; Østrup, Olga; Hovig, Eivind; Nygaard, Vegard et al.. 2017, ESMO Open.
https://doi.org/10.1136/esmoopen-2017-000158 (Academic article)
Implementing precision cancer medicine in the public health services of Norway: the diagnostic infrastructure and a cost estimate. Ree, Anne Hansen; Russnes, Hege Elisabeth Giercksky; Heinrich, Daniel; Dueland, Svein; Pedersen, Kjetil Boye; Nygaard, Vigdis; Silwal-Pandit, Laxmi; Østrup, Olga; Hovig, Eivind; Nygaard, Vegard et al.. 2017, ESMO Open.
https://doi.org/10.1136/esmoopen-2017-000158 (Academic article)
Incidence of and survival after subsequent cancers in carriers of pathogenic MMR variants with previous cancer: A report from the prospective Lynch syndrome database. Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D. Gareth; Lindblom, Annika; MacRae, Finlay; Blanco, Ignacio; Sijmons, Rolf et al.. 2017, Gut.
https://doi.org/10.1136/gutjnl-2016-311403 (Academic article)
Incidence of and survival after subsequent cancers in carriers of pathogenic MMR variants with previous cancer: A report from the prospective Lynch syndrome database. Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D. Gareth; Lindblom, Annika; MacRae, Finlay; Blanco, Ignacio; Sijmons, Rolf et al.. 2017, Gut.
https://doi.org/10.1136/gutjnl-2016-311403 (Academic article)
Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome. Aure, Miriam Ragle; Vitelli, Valeria; Jernström, Sandra Johanna; Kumar, Surendra; Krohn, Marit; Due, Eldri Undlien; Haukaas, Tonje Husby; Leivonen, Suvi-Katri; Vollan, Hans Kristian Moen; Luders, Torben et al.. 2017, Breast Cancer Research.
https://doi.org/10.1186/s13058-017-0812-y (Academic article)
Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome. Aure, Miriam Ragle; Vitelli, Valeria; Jernström, Sandra Johanna; Kumar, Surendra; Krohn, Marit; Due, Eldri Undlien; Haukaas, Tonje Husby; Leivonen, Suvi-Katri; Vollan, Hans Kristian Moen; Luders, Torben et al.. 2017, Breast Cancer Research.
https://doi.org/10.1186/s13058-017-0812-y (Academic article)
Long-term outcome for patients with early stage marginal zone lymphoma and mantle cell lymphoma. Barzenje, Dlawer Abdulla; Holte, Harald; Fosså, Alexander; Ghanima, Waleed Khalid; Liestøl, Knut; Delabie, Jan & Kolstad, Arne. 2017, Leukemia and Lymphoma.
https://doi.org/10.1080/10428194.2016.1204653 (Academic article)
Long-term outcome for patients with early stage marginal zone lymphoma and mantle cell lymphoma. Barzenje, Dlawer Abdulla; Holte, Harald; Fosså, Alexander; Ghanima, Waleed Khalid; Liestøl, Knut; Delabie, Jan & Kolstad, Arne. 2017, Leukemia and Lymphoma.
https://doi.org/10.1080/10428194.2016.1204653 (Academic article)
Long-term predictors of stroke in healthy middle-aged men. Prestgaard, Erik Edvard; Hodnesdal, Christian; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind. 2017, International Journal of Stroke.
https://doi.org/10.1177/1747493017730760 (Academic article)
Long-term predictors of stroke in healthy middle-aged men. Prestgaard, Erik Edvard; Hodnesdal, Christian; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind. 2017, International Journal of Stroke.
https://doi.org/10.1177/1747493017730760 (Academic article)
Mechanisms of ECG signs in chronic obstructive pulmonary disease. Larssen, Marte Strømsnes; Steine, Kjetil; Mykland Hilde, Janne; Skjørten, Ingunn; Hodnesdal, Christian; Liestøl, Knut & Gjesdal, Knut. 2017, Open heart.
https://doi.org/10.1136/openhrt-2016-000552 (Academic article)
Mechanisms of ECG signs in chronic obstructive pulmonary disease. Larssen, Marte Strømsnes; Steine, Kjetil; Mykland Hilde, Janne; Skjørten, Ingunn; Hodnesdal, Christian; Liestøl, Knut & Gjesdal, Knut. 2017, Open heart.
https://doi.org/10.1136/openhrt-2016-000552 (Academic article)
Neuronify: An educational simulator for neural circuits. Dragly, Svenn-Arne; Mobarhan, Milad; Solbrå, Andreas Våvang; Tennøe, Simen; Hafreager, Anders; Malthe-Sørenssen, Anders; Fyhn, Marianne; Hafting, Torkel & Einevoll, Gaute. 2017, eNeuro.
https://doi.org/10.1523/ENEURO.0022-17.2017 (Academic article)
Neuronify: An educational simulator for neural circuits. Dragly, Svenn-Arne; Mobarhan, Milad; Solbrå, Andreas Våvang; Tennøe, Simen; Hafreager, Anders; Malthe-Sørenssen, Anders; Fyhn, Marianne; Hafting, Torkel & Einevoll, Gaute. 2017, eNeuro.
https://doi.org/10.1523/ENEURO.0022-17.2017 (Academic article)
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. Khelik, Ksenia; Lagesen, Karin; Sandve, Geir Kjetil; Rognes, Torbjørn & Nederbragt, Alexander Johan. 2017, BMC Bioinformatics.
https://doi.org/10.1186/s12859-017-1748-z (Academic article)
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. Khelik, Ksenia; Lagesen, Karin; Sandve, Geir Kjetil; Rognes, Torbjørn & Nederbragt, Alexander Johan. 2017, BMC Bioinformatics.
https://doi.org/10.1186/s12859-017-1748-z (Academic article)
Our genes, our selves: hereditary breast cancer and biological citizenship in Norway. Møller, Pål & Hovig, Eivind. 2017, Medicine, Health care and Philosophy.
https://doi.org/10.1007/s11019-017-9803-0 (Short communication)
Our genes, our selves: hereditary breast cancer and biological citizenship in Norway. Møller, Pål & Hovig, Eivind. 2017, Medicine, Health care and Philosophy.
https://doi.org/10.1007/s11019-017-9803-0 (Short communication)
Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R et al.. 2017, Nature Communications.
https://doi.org/10.1038/s41467-017-01355-0 (Academic article)
Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R et al.. 2017, Nature Communications.
https://doi.org/10.1038/s41467-017-01355-0 (Academic article)
Patterns of constitutively phosphorylated kinases in B cells are associated with disease severity in common variable immunodeficiency. Taraldsrud, Eli; Aukrust, Pål; Jørgensen, Silje Fjellgård; Lingjærde, Ole Christian; Olweus, Johanna; Myklebust, June & Fevang, Børre. 2017, Clinical Immunology.
https://doi.org/10.1016/j.clim.2016.11.014 (Academic article)
Patterns of constitutively phosphorylated kinases in B cells are associated with disease severity in common variable immunodeficiency. Taraldsrud, Eli; Aukrust, Pål; Jørgensen, Silje Fjellgård; Lingjærde, Ole Christian; Olweus, Johanna; Myklebust, June & Fevang, Børre. 2017, Clinical Immunology.
https://doi.org/10.1016/j.clim.2016.11.014 (Academic article)
Potentially pathogenic germline CHEK2 c.319+2T>A among multiple early-onset cancer families. Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål et al.. 2017, Familial Cancer.
https://doi.org/10.1007/s10689-017-0011-0 (Academic article)
Potentially pathogenic germline CHEK2 c.319+2T>A among multiple early-onset cancer families. Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål et al.. 2017, Familial Cancer.
https://doi.org/10.1007/s10689-017-0011-0 (Academic article)
T cells expressing checkpoint receptor TIGIT are enriched in follicular lymphoma tumors and characterized by reversible suppression of T-cell receptor signaling. Josefsson, Sarah Elisabet Göthberg; Huse, Kanutte; Kolstad, Arne; Beiske, Klaus; Pende, Daniela; Steen, Chloe Beate; Inderberg, Else Marit ; Lingjærde, Ole Christian; Østenstad, Bjørn; Smeland, Erlend B et al.. 2017, Clinical Cancer Research.
https://doi.org/10.1158/1078-0432.CCR-17-2337 (Academic article)
T cells expressing checkpoint receptor TIGIT are enriched in follicular lymphoma tumors and characterized by reversible suppression of T-cell receptor signaling. Josefsson, Sarah Elisabet Göthberg; Huse, Kanutte; Kolstad, Arne; Beiske, Klaus; Pende, Daniela; Steen, Chloe Beate; Inderberg, Else Marit ; Lingjærde, Ole Christian; Østenstad, Bjørn; Smeland, Erlend B et al.. 2017, Clinical Cancer Research.
https://doi.org/10.1158/1078-0432.CCR-17-2337 (Academic article)
The BRCA2 variant c.68-7 T>A is associated with breast cancer. Møller, Pål & Hovig, Eivind. 2017, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-017-0080-y (Academic article)
The BRCA2 variant c.68-7 T>A is associated with breast cancer. Møller, Pål & Hovig, Eivind. 2017, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-017-0080-y (Academic article)
The longitudinal transcriptional response to neoadjuvant chemotherapy with and without bevacizumab in breast cancer. Silwal-Pandit, Laxmi; Nord, Silje; Gythfeldt, Hedda; Møller, Elen Kristine; Fleischer, Thomas; Rødland, Einar Andreas; Krohn, Marit; Borgen, Elin; Garred, Øystein; Olsen, Tone et al.. 2017, Clinical Cancer Research.
https://doi.org/10.1158/1078-0432.CCR-17-0160 (Academic article)
The longitudinal transcriptional response to neoadjuvant chemotherapy with and without bevacizumab in breast cancer. Silwal-Pandit, Laxmi; Nord, Silje; Gythfeldt, Hedda; Møller, Elen Kristine; Fleischer, Thomas; Rødland, Einar Andreas; Krohn, Marit; Borgen, Elin; Garred, Øystein; Olsen, Tone et al.. 2017, Clinical Cancer Research.
https://doi.org/10.1158/1078-0432.CCR-17-0160 (Academic article)
The rainfall plot: Its motivation, characteristics and pitfalls. Domanska, Diana Ewa; Vodak, Daniel; Christin, Lund-Andersen; Salvatore, Stefania; Hovig, Eivind & Sandve, Geir Kjetil. 2017, BMC Bioinformatics.
https://doi.org/10.1186/s12859-017-1679-8 (Academic article)
The rainfall plot: Its motivation, characteristics and pitfalls. Domanska, Diana Ewa; Vodak, Daniel; Christin, Lund-Andersen; Salvatore, Stefania; Hovig, Eivind & Sandve, Geir Kjetil. 2017, BMC Bioinformatics.
https://doi.org/10.1186/s12859-017-1679-8 (Academic article)
Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B. et al.. 2017, Scientific Reports.
https://doi.org/10.1038/s41598-017-07314-5 (Academic article)
Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B. et al.. 2017, Scientific Reports.
https://doi.org/10.1038/s41598-017-07314-5 (Academic article)
Use of liquid biopsies to monitor disease progression in a sarcoma patient: a case report. Namløs, Heidi Maria; Zaikova, Olga; Bjerkehagen, Bodil; Vodak, Daniel; Hovig, Johannes Eivind; Myklebost, Ola; Pedersen, Kjetil Boye & Meza, Leonardo Zepeda. 2017, BMC Cancer.
https://doi.org/10.1186/s12885-016-2992-8 (Academic article)
Use of liquid biopsies to monitor disease progression in a sarcoma patient: a case report. Namløs, Heidi Maria; Zaikova, Olga; Bjerkehagen, Bodil; Vodak, Daniel; Hovig, Johannes Eivind; Myklebost, Ola; Pedersen, Kjetil Boye & Meza, Leonardo Zepeda. 2017, BMC Cancer.
https://doi.org/10.1186/s12885-016-2992-8 (Academic article)
2016
A comparison between wastewater-based drug data and an illicit drug use survey in a selected community. van Wel, Janelle H.P.; Kinyua, Juliet; van Nuijs, Alexander L.N.; Salvatore, Stefania; Bramness, Jørgen Gustav; Covaci, Adrian & van Hal, Guido. 2016, International journal of drug policy.
https://doi.org/10.1016/j.drugpo.2016.04.003 (Academic article)
A comparison between wastewater-based drug data and an illicit drug use survey in a selected community. van Wel, Janelle H.P.; Kinyua, Juliet; van Nuijs, Alexander L.N.; Salvatore, Stefania; Bramness, Jørgen Gustav; Covaci, Adrian & van Hal, Guido. 2016, International journal of drug policy.
https://doi.org/10.1016/j.drugpo.2016.04.003 (Academic article)
A nuanced picture of illicit drug use in 17 Italian cities through functional principal component analysis of temporal wastewater data. Salvatore, Stefania; Frøslie, Kathrine Frey; Røislien, Jo; Zuccato, Ettore; Castiglioni, Sara & Bramness, Jørgen Gustav. 2016, Journal of Public Health (Berlin).
https://doi.org/10.1007/s10389-016-0717-8 (Academic article)
A nuanced picture of illicit drug use in 17 Italian cities through functional principal component analysis of temporal wastewater data. Salvatore, Stefania; Frøslie, Kathrine Frey; Røislien, Jo; Zuccato, Ettore; Castiglioni, Sara & Bramness, Jørgen Gustav. 2016, Journal of Public Health (Berlin).
https://doi.org/10.1007/s10389-016-0717-8 (Academic article)
A systematic comparison of copy number alterations in four types of female cancer. Kaveh, Fatemeh; Baumbusch, Lars Oliver; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian; Edvardsen, Hege; Kristensen, Vessela N. & Solvang, Hiroko Kato. 2016, BMC Cancer.
https://doi.org/10.1186/s12885-016-2899-4 (Academic article)
A systematic comparison of copy number alterations in four types of female cancer. Kaveh, Fatemeh; Baumbusch, Lars Oliver; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian; Edvardsen, Hege; Kristensen, Vessela N. & Solvang, Hiroko Kato. 2016, BMC Cancer.
https://doi.org/10.1186/s12885-016-2899-4 (Academic article)
AGXT and ERCC2 polymorphisms are associated with clinical outcome in metastatic colorectal cancer patients treated with 5-FU/oxaliplatin. Kjersem, Janne Beathe; Thomsen, Maria; Guren, Tormod Kyrre; Hamfjord, Julian; Carlsson, G; Gustavsson, B.; Ikdahl, Tone; Indrebø, Gunnar; Pfeiffer, P; Lingjærde, Ole Christian et al.. 2016, The Pharmacogenomics Journal.
https://doi.org/10.1038/tpj.2015.54 (Academic article)
AGXT and ERCC2 polymorphisms are associated with clinical outcome in metastatic colorectal cancer patients treated with 5-FU/oxaliplatin. Kjersem, Janne Beathe; Thomsen, Maria; Guren, Tormod Kyrre; Hamfjord, Julian; Carlsson, G; Gustavsson, B.; Ikdahl, Tone; Indrebø, Gunnar; Pfeiffer, P; Lingjærde, Ole Christian et al.. 2016, The Pharmacogenomics Journal.
https://doi.org/10.1038/tpj.2015.54 (Academic article)
ALIX and ESCRT-I/II function as parallel ESCRT-III recruiters in cytokinetic abscission. Christ, Liliane Florence; Wenzel, Eva; Liestøl, Knut; Raiborg, Camilla; Campsteijn, Coen & Stenmark, Harald Alfred. 2016, Journal of Cell Biology.
https://doi.org/10.1083/jcb.201507009 (Academic article)
ALIX and ESCRT-I/II function as parallel ESCRT-III recruiters in cytokinetic abscission. Christ, Liliane Florence; Wenzel, Eva; Liestøl, Knut; Raiborg, Camilla; Campsteijn, Coen & Stenmark, Harald Alfred. 2016, Journal of Cell Biology.
https://doi.org/10.1083/jcb.201507009 (Academic article)
Changes in Chromatin Structure in Curettage Specimens Identifies High-Risk Patients in Endometrial Cancer. Hveem, Tarjei Sveinsgjerd; Njølstad, Tormund Salvesen; Nielsen, Birgitte; Syvertsen, Rolf Anders; Nesheim, John Arne; Kjæreng, Marna Lill; Kildal, Wanja; Pradhan, Manohar; Marcickiewicz, Janusz; Tingulstad, Solveig et al.. 2016, Cancer Epidemiology, Biomarkers and Prevention.
https://doi.org/10.1158/1055-9965.EPI-16-0215 (Academic article)
Changes in Chromatin Structure in Curettage Specimens Identifies High-Risk Patients in Endometrial Cancer. Hveem, Tarjei Sveinsgjerd; Njølstad, Tormund Salvesen; Nielsen, Birgitte; Syvertsen, Rolf Anders; Nesheim, John Arne; Kjæreng, Marna Lill; Kildal, Wanja; Pradhan, Manohar; Marcickiewicz, Janusz; Tingulstad, Solveig et al.. 2016, Cancer Epidemiology, Biomarkers and Prevention.
https://doi.org/10.1158/1055-9965.EPI-16-0215 (Academic article)
Chromatin changes predict recurrence after radical prostatectomy. Hveem, Tarjei Sveinsgjerd; Kleppe, Andreas; Vlatkovic, Ljiljana; Ersvær, Elin; Wæhre, Haakon; Nielsen, Birgitte; Kjær, Marte Avranden; Pradhan, Manohar; Syvertsen, Rolf Anders; Nesheim, John Arne et al.. 2016, British Journal of Cancer.
https://doi.org/10.1038/bjc.2016.96 (Academic article)
Chromatin changes predict recurrence after radical prostatectomy. Hveem, Tarjei Sveinsgjerd; Kleppe, Andreas; Vlatkovic, Ljiljana; Ersvær, Elin; Wæhre, Haakon; Nielsen, Birgitte; Kjær, Marte Avranden; Pradhan, Manohar; Syvertsen, Rolf Anders; Nesheim, John Arne et al.. 2016, British Journal of Cancer.
https://doi.org/10.1038/bjc.2016.96 (Academic article)
cnvScan: A CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data. Samarakoon, Pubudu Saneth; Sorte, Hanne Sørmo; Stray-Pedersen, Asbjørg; Rødningen, Olaug Kristin; Rognes, Torbjørn & Lyle, Robert. 2016, BMC Genomics.
https://doi.org/10.1186/s12864-016-2374-2 (Academic article)
cnvScan: A CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data. Samarakoon, Pubudu Saneth; Sorte, Hanne Sørmo; Stray-Pedersen, Asbjørg; Rødningen, Olaug Kristin; Rognes, Torbjørn & Lyle, Robert. 2016, BMC Genomics.
https://doi.org/10.1186/s12864-016-2374-2 (Academic article)
Comparison of pharmaceutical, illicit drug, alcohol, nicotine and caffeine levels in wastewater with sale, seizure and consumption data for 8 European cities. Baz-Lomba, Jose Antonio; Salvatore, Stefania; Gracia-Lor, Emma; Bade, Richard; Castiglioni, Sara; Castrignanò, Erika; Causanilles, Ana; Hernandez, Félix; Kasprzyk-Hordern, Barbara; Kinyua, Juliet et al.. 2016, BMC Public Health.
https://doi.org/10.1186/s12889-016-3686-5 (Academic article)
Comparison of pharmaceutical, illicit drug, alcohol, nicotine and caffeine levels in wastewater with sale, seizure and consumption data for 8 European cities. Baz-Lomba, Jose Antonio; Salvatore, Stefania; Gracia-Lor, Emma; Bade, Richard; Castiglioni, Sara; Castrignanò, Erika; Causanilles, Ana; Hernandez, Félix; Kasprzyk-Hordern, Barbara; Kinyua, Juliet et al.. 2016, BMC Public Health.
https://doi.org/10.1186/s12889-016-3686-5 (Academic article)
Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. Sandhu, Vandana; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Skrede, Martina; Hamfjord, Julian; Larsen, Astrid Marie; Buanes, Trond; Dube, Gugu; Kale, MM; Sawant, S et al.. 2016, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2015.10.011 (Academic article)
Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. Sandhu, Vandana; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Skrede, Martina; Hamfjord, Julian; Larsen, Astrid Marie; Buanes, Trond; Dube, Gugu; Kale, MM; Sawant, S et al.. 2016, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2015.10.011 (Academic article)
Experimental factors affecting the robustness of DNA methylation analysis. Pharo, Heidi Dietrichson; Honne, Hilde; Vedeld, Hege Marie; Dahl, Christina; Andresen, Kim; Liestøl, Knut; Jeanmougin, Marine; Guldberg, Per & Lind, Guro Elisabeth. 2016, Scientific Reports.
https://doi.org/10.1038/srep33936 (Academic article)
Experimental factors affecting the robustness of DNA methylation analysis. Pharo, Heidi Dietrichson; Honne, Hilde; Vedeld, Hege Marie; Dahl, Christina; Andresen, Kim; Liestøl, Knut; Jeanmougin, Marine; Guldberg, Per & Lind, Guro Elisabeth. 2016, Scientific Reports.
https://doi.org/10.1038/srep33936 (Academic article)
Exploring functional data analysis and wavelet principal component analysis on ecstasy (MDMA) wastewater data. Salvatore, Stefania; Bramness, Jørgen Gustav & Røislien, Jo. 2016, BMC Medical Research Methodology.
https://doi.org/10.1186/s12874-016-0179-2 (Academic article)
Exploring functional data analysis and wavelet principal component analysis on ecstasy (MDMA) wastewater data. Salvatore, Stefania; Bramness, Jørgen Gustav & Røislien, Jo. 2016, BMC Medical Research Methodology.
https://doi.org/10.1186/s12874-016-0179-2 (Academic article)
Galaxy Portal: Interacting with the galaxy platform through mobile devices. Børnich, Claus; Grytten, Ivar; Hovig, Johannes Eivind; Paulsen, Jonas; Cech, Martin & Sandve, Geir Kjetil. 2016, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btw042 (Academic article)
Galaxy Portal: Interacting with the galaxy platform through mobile devices. Børnich, Claus; Grytten, Ivar; Hovig, Johannes Eivind; Paulsen, Jonas; Cech, Martin & Sandve, Geir Kjetil. 2016, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btw042 (Academic article)
Handling high-dimensional data in air pollution forecasting tasks. Domanska, Diana Ewa & Lukasik, Szymon. 2016, Ecological Informatics.
https://doi.org/10.1016/j.ecoinf.2016.04.007 (Academic article)
Handling high-dimensional data in air pollution forecasting tasks. Domanska, Diana Ewa & Lukasik, Szymon. 2016, Ecological Informatics.
https://doi.org/10.1016/j.ecoinf.2016.04.007 (Academic article)
Heart rate reserve predicts cardiovascular death among physically unfit but otherwise healthy middle-aged men: a 35-year follow-up study. Engeseth, Kristian; Hodnesdal, Christian; Grundvold, Irene; Liestøl, Knut; Gjesdal, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2016, European Journal of Preventive Cardiology (EJPC).
https://doi.org/10.1177/2047487314553202 (Academic article)
Heart rate reserve predicts cardiovascular death among physically unfit but otherwise healthy middle-aged men: a 35-year follow-up study. Engeseth, Kristian; Hodnesdal, Christian; Grundvold, Irene; Liestøl, Knut; Gjesdal, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2016, European Journal of Preventive Cardiology (EJPC).
https://doi.org/10.1177/2047487314553202 (Academic article)
Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization. Di Stefano, Marco; Paulsen, Jonas; Lien, Tonje Gulbrandsen; Hovig, Johannes Eivind & Micheletti, Cristian. 2016, Scientific Reports.
https://doi.org/10.1038/srep35985 (Academic article)
Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization. Di Stefano, Marco; Paulsen, Jonas; Lien, Tonje Gulbrandsen; Hovig, Johannes Eivind & Micheletti, Cristian. 2016, Scientific Reports.
https://doi.org/10.1038/srep35985 (Academic article)
HS1BP3 negatively regulates autophagy by modulation of phosphatidic acid levels. Holland, Petter; Knævelsrud, Helene; Søreng, Kristiane; Mathai, Benan John; Lystad, Alf Håkon; Pankiv, Serhiy; Bjørndal, Gunnveig Toft; Schultz, Sebastian; Lobert, Viola; Chan, Robin B et al.. 2016, Nature Communications.
https://doi.org/10.1038/ncomms13889 (Academic article)
HS1BP3 negatively regulates autophagy by modulation of phosphatidic acid levels. Holland, Petter; Knævelsrud, Helene; Søreng, Kristiane; Mathai, Benan John; Lystad, Alf Håkon; Pankiv, Serhiy; Bjørndal, Gunnveig Toft; Schultz, Sebastian; Lobert, Viola; Chan, Robin B et al.. 2016, Nature Communications.
https://doi.org/10.1038/ncomms13889 (Academic article)
Incorrect results in software engineering experiments: How to improve research practices. Jørgensen, Magne; Dybå, Tore; Liestøl, Knut & Sjøberg, Dag. 2016, Journal of Systems and Software.
https://doi.org/10.1016/j.jss.2015.03.065 (Academic article)
Incorrect results in software engineering experiments: How to improve research practices. Jørgensen, Magne; Dybå, Tore; Liestøl, Knut & Sjøberg, Dag. 2016, Journal of Systems and Software.
https://doi.org/10.1016/j.jss.2015.03.065 (Academic article)
Interaction with epsin 1 regulates the constitutive clathrin-dependent internalization of ErbB3. Szymanska, Monika; Fosdahl, Anne-Marthe; Raiborg, Camilla; Dietrich, Markus; Liestøl, Knut; Stang, Espen & Bertelsen, Vibeke. 2016, BBA - Molecular Cell Research.
https://doi.org/10.1016/j.bbamcr.2016.03.011 (Academic article)
Interaction with epsin 1 regulates the constitutive clathrin-dependent internalization of ErbB3. Szymanska, Monika; Fosdahl, Anne-Marthe; Raiborg, Camilla; Dietrich, Markus; Liestøl, Knut; Stang, Espen & Bertelsen, Vibeke. 2016, BBA - Molecular Cell Research.
https://doi.org/10.1016/j.bbamcr.2016.03.011 (Academic article)
Intra-patient inter-metastatic genetic heterogeneity in colorectal cancer as a key determinant of survival after curative liver resection. Sveen, Anita; Løes, Inger Marie; Alagaratnam, Sharmini; Nilsen, Gro; Høland, Maren; Lingjærde, Ole Christian; Sorbye, Halfdan; Berg, Kaja Christine Graue; Horn, Arild; Angelsen, Jon-Helge et al.. 2016, PLoS Genetics.
https://doi.org/10.1371/journal.pgen.1006225 (Academic article)
Intra-patient inter-metastatic genetic heterogeneity in colorectal cancer as a key determinant of survival after curative liver resection. Sveen, Anita; Løes, Inger Marie; Alagaratnam, Sharmini; Nilsen, Gro; Høland, Maren; Lingjærde, Ole Christian; Sorbye, Halfdan; Berg, Kaja Christine Graue; Horn, Arild; Angelsen, Jon-Helge et al.. 2016, PLoS Genetics.
https://doi.org/10.1371/journal.pgen.1006225 (Academic article)
Investigation of agreement between wastewater-based epidemiology and survey data on alcohol and nicotine use in a community. van Wel, Janelle H.P.; Garcia-Lor, Emma; van Nuijs, Alexander L.N.; Kinyua, Juliet; Salvatore, Stefania; Castiglioni, Sara; Bramness, Jørgen Gustav; Covaci, Adrian & van Hal, Guido. 2016, Drug and Alcohol Dependence.
https://doi.org/10.1016/j.drugalcdep.2016.03.002 (Academic article)
Investigation of agreement between wastewater-based epidemiology and survey data on alcohol and nicotine use in a community. van Wel, Janelle H.P.; Garcia-Lor, Emma; van Nuijs, Alexander L.N.; Kinyua, Juliet; Salvatore, Stefania; Castiglioni, Sara; Bramness, Jørgen Gustav; Covaci, Adrian & van Hal, Guido. 2016, Drug and Alcohol Dependence.
https://doi.org/10.1016/j.drugalcdep.2016.03.002 (Academic article)
Landscape of somatic mutations in 560 breast cancer whole-genome sequences. Nik-Zainal, Serena; Davies, Helen; Staaf, Johan; Ramakrishna, Manasa; Glodzik, Dominik; Zou, Xueqing; Martincorena, Inigo; Alexandrov, Ludmil B.; Martin, Sancha; Wedge, David C. et al.. 2016, Nature.
https://doi.org/10.1038/nature17676 (Academic article)
Landscape of somatic mutations in 560 breast cancer whole-genome sequences. Nik-Zainal, Serena; Davies, Helen; Staaf, Johan; Ramakrishna, Manasa; Glodzik, Dominik; Zou, Xueqing; Martincorena, Inigo; Alexandrov, Ludmil B.; Martin, Sancha; Wedge, David C. et al.. 2016, Nature.
https://doi.org/10.1038/nature17676 (Academic article)
LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer. Sas-Chen, Aldema; Aure, Miriam Ragle; Leibovich, Limor; Carvalho, Silvia; Enuka, Yehoshua; Körner, Cindy; Polycarpou-Schwarz, Maria; Lavi, Sara; Nevo, Nava; Kuznetsov, Yuri et al.. 2016, EMBO Molecular Medicine.
https://doi.org/10.15252/emmm.201606198 (Academic article)
LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer. Sas-Chen, Aldema; Aure, Miriam Ragle; Leibovich, Limor; Carvalho, Silvia; Enuka, Yehoshua; Körner, Cindy; Polycarpou-Schwarz, Maria; Lavi, Sara; Nevo, Nava; Kuznetsov, Yuri et al.. 2016, EMBO Molecular Medicine.
https://doi.org/10.15252/emmm.201606198 (Academic article)
Metabolic clusters of breast cancer in relation to gene- and protein expression subtypes. Haukaas, Tonje Husby; Euceda, Leslie R.; Giskeødegård, Guro F.; Lamichhane, Santosh; Krohn, Marit; Jernström, Sandra Johanna; Aure, Miriam Ragle; Lingjærde, Ole Christian; Schlichting, Ellen; Garred, Øystein et al.. 2016, Cancer & Metabolism.
https://doi.org/10.1186/s40170-016-0152-x (Academic article)
Metabolic clusters of breast cancer in relation to gene- and protein expression subtypes. Haukaas, Tonje Husby; Euceda, Leslie R.; Giskeødegård, Guro F.; Lamichhane, Santosh; Krohn, Marit; Jernström, Sandra Johanna; Aure, Miriam Ragle; Lingjærde, Ole Christian; Schlichting, Ellen; Garred, Øystein et al.. 2016, Cancer & Metabolism.
https://doi.org/10.1186/s40170-016-0152-x (Academic article)
Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses. Nygaard, Vegard; Rødland, Einar Andreas & Hovig, Johannes Eivind. 2016, Biostatistics.
https://doi.org/10.1093/biostatistics/kxv027 (Academic article)
Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses. Nygaard, Vegard; Rødland, Einar Andreas & Hovig, Johannes Eivind. 2016, Biostatistics.
https://doi.org/10.1093/biostatistics/kxv027 (Academic article)
MITF depletion elevates expression levels of ERBB3 receptor and its cognate ligand NRG1-beta in melanoma. Alver, Tine Norman; Lavelle, Timothy J; Longva, Ane Sager; Øy, Geir Frode; Hovig, Johannes Eivind & Bøe, Sigurd. 2016, OncoTarget.
https://doi.org/10.18632/oncotarget.10422 (Academic article)
MITF depletion elevates expression levels of ERBB3 receptor and its cognate ligand NRG1-beta in melanoma. Alver, Tine Norman; Lavelle, Timothy J; Longva, Ane Sager; Øy, Geir Frode; Hovig, Johannes Eivind & Bøe, Sigurd. 2016, OncoTarget.
https://doi.org/10.18632/oncotarget.10422 (Academic article)
Naive donor NK cell repertoires associated with less leukemia relapse after allogeneic hematopoietic stem cell transplantation. Björklund, Andreas T.; Clancy, Trevor; Goodridge, Jodie; Béziat, Vivien; Schaffer, Marie; Hovig, Johannes Eivind; Ljunggren, Hans-Gustaf; Ljungman, Per T. & Malmberg, Karl-Johan. 2016, Journal of Immunology.
https://doi.org/10.4049/jimmunol.1501434 (Academic article)
Naive donor NK cell repertoires associated with less leukemia relapse after allogeneic hematopoietic stem cell transplantation. Björklund, Andreas T.; Clancy, Trevor; Goodridge, Jodie; Béziat, Vivien; Schaffer, Marie; Hovig, Johannes Eivind; Ljunggren, Hans-Gustaf; Ljungman, Per T. & Malmberg, Karl-Johan. 2016, Journal of Immunology.
https://doi.org/10.4049/jimmunol.1501434 (Academic article)
Open-source sequence clustering methods improve the state of the art. Kopylova, Evguenia; Navas-Molina, Jose A.; Mercier, Céline; Xu, Zhenjiang Zech; Mahé, Frédéric; He, Yan; Zhou, Hong-Wei; Rognes, Torbjørn; Caporaso, J. Gregory & Knight, Rob. 2016, mSystems.
https://doi.org/10.1128/mSystems.00003-15 (Academic article)
Open-source sequence clustering methods improve the state of the art. Kopylova, Evguenia; Navas-Molina, Jose A.; Mercier, Céline; Xu, Zhenjiang Zech; Mahé, Frédéric; He, Yan; Zhou, Hong-Wei; Rognes, Torbjørn; Caporaso, J. Gregory & Knight, Rob. 2016, mSystems.
https://doi.org/10.1128/mSystems.00003-15 (Academic article)
Pre-diagnostic serum levels of EGFR and ErbB2 and genetic glioma risk variants: a nested case-control study. Späth, Florentin; Andersson, Ulrika; Dahlin, Anna M; Langseth, Hilde; Hovig, Johannes Eivind; Johannesen, Tom Børge; Grankvist, Kjell; Björkblom, Benny; Wibom, Carl & Melin, Beatrice. 2016, Tumour Biology.
https://doi.org/10.1007/s13277-015-4742-y (Academic article)
Pre-diagnostic serum levels of EGFR and ErbB2 and genetic glioma risk variants: a nested case-control study. Späth, Florentin; Andersson, Ulrika; Dahlin, Anna M; Langseth, Hilde; Hovig, Johannes Eivind; Johannesen, Tom Børge; Grankvist, Kjell; Björkblom, Benny; Wibom, Carl & Melin, Beatrice. 2016, Tumour Biology.
https://doi.org/10.1007/s13277-015-4742-y (Academic article)
Profiling networks of distinct immune-cells in tumors. Clancy, Trevor & Hovig, Eivind. 2016, BMC Bioinformatics.
https://doi.org/10.1186/s12859-016-1141-3 (Academic article)
Profiling networks of distinct immune-cells in tumors. Clancy, Trevor & Hovig, Eivind. 2016, BMC Bioinformatics.
https://doi.org/10.1186/s12859-016-1141-3 (Academic article)
Subtype-specific micro-RNA expression signatures in breast cancer progression. Haakensen, Vilde Drageset; Nygaard, Vegard; Greger, Liliana; Aure, Miriam Ragle; Fromm, Bastian; Bukholm, Ida Rashida Khan; Luders, Torben; Chin, Suet-Feung; Git, Anna; Caldas, Carlos et al.. 2016, International Journal of Cancer.
https://doi.org/10.1002/ijc.30142 (Academic article)
Subtype-specific micro-RNA expression signatures in breast cancer progression. Haakensen, Vilde Drageset; Nygaard, Vegard; Greger, Liliana; Aure, Miriam Ragle; Fromm, Bastian; Bukholm, Ida Rashida Khan; Luders, Torben; Chin, Suet-Feung; Git, Anna; Caldas, Carlos et al.. 2016, International Journal of Cancer.
https://doi.org/10.1002/ijc.30142 (Academic article)
Temporal reduction in chronotropic index predicts risk of cardiovascular death among healthy middle-aged men: A 28-year follow-up study. Engeseth, Kristian; Hodnesdal, Christian; Grundvold, Irene; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2016, Journal of the American Heart Association (JAHA).
https://doi.org/10.1161/JAHA.116.004555 (Academic article)
Temporal reduction in chronotropic index predicts risk of cardiovascular death among healthy middle-aged men: A 28-year follow-up study. Engeseth, Kristian; Hodnesdal, Christian; Grundvold, Irene; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2016, Journal of the American Heart Association (JAHA).
https://doi.org/10.1161/JAHA.116.004555 (Academic article)
The genomic landscape of pancreatic and periampullary adenocarcinoma. Sandhu, Vandana; Wedge, David C.; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Dentro, Stefan C.; Buanes, Trond; Skrede, Martina; Larsen, Astrid Marie; Munthe, Else; Myklebost, Ola et al.. 2016, Cancer Research.
https://doi.org/10.1158/0008-5472.CAN-16-0658 (Academic article)
The genomic landscape of pancreatic and periampullary adenocarcinoma. Sandhu, Vandana; Wedge, David C.; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Dentro, Stefan C.; Buanes, Trond; Skrede, Martina; Larsen, Astrid Marie; Munthe, Else; Myklebost, Ola et al.. 2016, Cancer Research.
https://doi.org/10.1158/0008-5472.CAN-16-0658 (Academic article)
The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress. Namouchi, Amine; Gomez Munoz, Marta; Frye, Stephan Alfons; Moen, Line Victoria; Rognes, Torbjørn; Tonjum, Tone & Balasingham, Seetha. 2016, BMC Genomics.
https://doi.org/10.1186/s12864-016-3132-1 (Academic article)
The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress. Namouchi, Amine; Gomez Munoz, Marta; Frye, Stephan Alfons; Moen, Line Victoria; Rognes, Torbjørn; Tonjum, Tone & Balasingham, Seetha. 2016, BMC Genomics.
https://doi.org/10.1186/s12864-016-3132-1 (Academic article)
The tumour microenvironment influences survival and time to transformation in follicular lymphoma in the rituximab era. Blaker, Yngvild Nuvin; Spetalen, Signe; Eide, Marianne Brodtkorb; Lingjærde, Ole Christian; Beiske, Klaus; Østenstad, Bjørn; Sander, Birgitta; Wahlin, Björn Engelbrekt; Melen, Christopher Michael; Myklebust, June et al.. 2016, British Journal of Haematology.
https://doi.org/10.1111/bjh.14201 (Academic article)
The tumour microenvironment influences survival and time to transformation in follicular lymphoma in the rituximab era. Blaker, Yngvild Nuvin; Spetalen, Signe; Eide, Marianne Brodtkorb; Lingjærde, Ole Christian; Beiske, Klaus; Østenstad, Bjørn; Sander, Birgitta; Wahlin, Björn Engelbrekt; Melen, Christopher Michael; Myklebust, June et al.. 2016, British Journal of Haematology.
https://doi.org/10.1111/bjh.14201 (Academic article)
TP53 mutation spectrum in smokers and never smoking lung cancer patients. Halvorsen, Ann Rita; Silwal-Pandit, Laxmi; Meza, Leonardo Zepeda; Vodak, Daniel; Vu, Phuong Ngoc Thi; Sagerup, Camilla Maria Troøien; Hovig, Johannes Eivind; Myklebost, Ola; Børresen-Dale, Anne-Lise; Brustugun, Odd Terje et al.. 2016, Frontiers in Genetics.
https://doi.org/10.3389/fgene.2016.00085 (Academic article)
TP53 mutation spectrum in smokers and never smoking lung cancer patients. Halvorsen, Ann Rita; Silwal-Pandit, Laxmi; Meza, Leonardo Zepeda; Vodak, Daniel; Vu, Phuong Ngoc Thi; Sagerup, Camilla Maria Troøien; Hovig, Johannes Eivind; Myklebost, Ola; Børresen-Dale, Anne-Lise; Brustugun, Odd Terje et al.. 2016, Frontiers in Genetics.
https://doi.org/10.3389/fgene.2016.00085 (Academic article)
Transcriptomic Profiling of Tumor Aggressiveness in Sporadic Nonfunctioning Pancreatic Neuroendocrine Neoplasms. Haugvik, Sven-Petter; Vodak, Daniel; Haugom, Lisbeth; Hovig, Johannes Eivind; Gladhaug, Ivar Prydz; Heim, Sverre & Micci, Francesca. 2016, Pancreas.
https://doi.org/10.1097/MPA.0000000000000610 (Academic article)
Transcriptomic Profiling of Tumor Aggressiveness in Sporadic Nonfunctioning Pancreatic Neuroendocrine Neoplasms. Haugvik, Sven-Petter; Vodak, Daniel; Haugom, Lisbeth; Hovig, Johannes Eivind; Gladhaug, Ivar Prydz; Heim, Sverre & Micci, Francesca. 2016, Pancreas.
https://doi.org/10.1097/MPA.0000000000000610 (Academic article)
VSEARCH: A versatile open source tool for metagenomics. Rognes, Torbjørn; Flouri, Tomáš; Nichols, Ben; Quince, Christopher & Mahé, Frédéric. 2016, PeerJ.
https://doi.org/10.7717/peerj.2584 (Academic article)
VSEARCH: A versatile open source tool for metagenomics. Rognes, Torbjørn; Flouri, Tomáš; Nichols, Ben; Quince, Christopher & Mahé, Frédéric. 2016, PeerJ.
https://doi.org/10.7717/peerj.2584 (Academic article)
2015
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing. Alioto, Tyler S.; Buchhalter, Ivo; Derdak, Sophia; Hutter, Barbara; Eldridge, Matthew D.; Hovig, Johannes Eivind; Heisler, Lawrence E.; Beck, Timothy A.; Simpson, Jared T.; Tonon, Laurie et al.. 2015, Nature Communications.
https://doi.org/10.1038/ncomms10001 (Academic article)
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing. Alioto, Tyler S.; Buchhalter, Ivo; Derdak, Sophia; Hutter, Barbara; Eldridge, Matthew D.; Hovig, Johannes Eivind; Heisler, Lawrence E.; Beck, Timothy A.; Simpson, Jared T.; Tonon, Laurie et al.. 2015, Nature Communications.
https://doi.org/10.1038/ncomms10001 (Academic article)
A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer. Vollan, Hans Kristian Moen; Rueda, Oscar M.; Chin, Suet-Feung; Curtis, Christina; Turashvili, Gulisa; Shah, Sohrab P.; Lingjærde, Ole Christian; Yuan, Yinyin; Ng, Charlotte K.; Dunning, Mark J. et al.. 2015, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2014.07.019 (Academic article)
A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer. Vollan, Hans Kristian Moen; Rueda, Oscar M.; Chin, Suet-Feung; Curtis, Christina; Turashvili, Gulisa; Shah, Sohrab P.; Lingjærde, Ole Christian; Yuan, Yinyin; Ng, Charlotte K.; Dunning, Mark J. et al.. 2015, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2014.07.019 (Academic article)
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Fromm, Bastian; Billipp, Tyler; Peck, Liam E.; Johansen, Morten; Tarver, James E.; King, Benjamin L.; Newcomb, James M.; Sempere, Lorenzo F.; Flatmark, Kjersti; Hovig, Johannes Eivind et al.. 2015, Annual Review of Genetics.
https://doi.org/10.1146/annurev-genet-120213-092023 (Academic article)
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Fromm, Bastian; Billipp, Tyler; Peck, Liam E.; Johansen, Morten; Tarver, James E.; King, Benjamin L.; Newcomb, James M.; Sempere, Lorenzo F.; Flatmark, Kjersti; Hovig, Johannes Eivind et al.. 2015, Annual Review of Genetics.
https://doi.org/10.1146/annurev-genet-120213-092023 (Academic article)
Achievements in congenital heart defect surgery: A prospective, 40-year study of 7038 patients. Erikssen, Gunnar; Liestøl, Knut; Seem, Egil; Birkelance, Sigurce; Saatvedt, Kjell; Nilsen-Hoel, Tom; Døhlen, Gaute; Skulstad, Helge; Svennevig, Jan Ludvig; Thaulow, Erik et al.. 2015, Circulation.
https://doi.org/10.1161/CIRCULATIONAHA.114.012033 (Academic article)
Achievements in congenital heart defect surgery: A prospective, 40-year study of 7038 patients. Erikssen, Gunnar; Liestøl, Knut; Seem, Egil; Birkelance, Sigurce; Saatvedt, Kjell; Nilsen-Hoel, Tom; Døhlen, Gaute; Skulstad, Helge; Svennevig, Jan Ludvig; Thaulow, Erik et al.. 2015, Circulation.
https://doi.org/10.1161/CIRCULATIONAHA.114.012033 (Academic article)
ALIX and ESCRT-III Coordinately Control Cytokinetic Abscission during Germline Stem Cell Division In Vivo. Eikenes, Åsmund Husabø; Malerød, Lene; Christensen, Anette Lie; Steen, Chloe Beate; Mathieu, Juliette; Nezis, Ioannis P; Liestøl, Knut; Huynh, Jean-Rene; Stenmark, Harald & Haglund, Kaisa. 2015, PLoS Genetics.
https://doi.org/10.1371/journal.pgen.1004904 (Academic article)
ALIX and ESCRT-III Coordinately Control Cytokinetic Abscission during Germline Stem Cell Division In Vivo. Eikenes, Åsmund Husabø; Malerød, Lene; Christensen, Anette Lie; Steen, Chloe Beate; Mathieu, Juliette; Nezis, Ioannis P; Liestøl, Knut; Huynh, Jean-Rene; Stenmark, Harald & Haglund, Kaisa. 2015, PLoS Genetics.
https://doi.org/10.1371/journal.pgen.1004904 (Academic article)
Apolipoprotein E allelotype is associated with neuropathological findings in Alzheimer's disease. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael & Mæhlen, Jan. 2015, Virchows Archiv.
https://doi.org/10.1007/s00428-015-1772-1 (Academic article)
Apolipoprotein E allelotype is associated with neuropathological findings in Alzheimer's disease. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael & Mæhlen, Jan. 2015, Virchows Archiv.
https://doi.org/10.1007/s00428-015-1772-1 (Academic article)
Automated amplicon design suitable for analysis of DNA variants by melting techniques. Ekstrøm, Per Olaf; Nakken, Sigve; Johansen, Morten & Hovig, Johannes Eivind. 2015, BMC Research Notes.
https://doi.org/10.1186/s13104-015-1624-8 (Academic article)
Automated amplicon design suitable for analysis of DNA variants by melting techniques. Ekstrøm, Per Olaf; Nakken, Sigve; Johansen, Morten & Hovig, Johannes Eivind. 2015, BMC Research Notes.
https://doi.org/10.1186/s13104-015-1624-8 (Academic article)
Bioinformatikk - å forstå teksten. Hovig, Eivind & Rognes, Torbjørn. 2015, Gyldendal Norsk Forlag A/S.
(Popular scientific chapter/article)
Bioinformatikk - å forstå teksten. Hovig, Eivind & Rognes, Torbjørn. 2015, Gyldendal Norsk Forlag A/S.
(Popular scientific chapter/article)
BRAF V600E mutation in early-stage multiple myeloma: good response to broad acting drugs and no relation to prognosis. Rustad, Even Holth; Dai, Hong Yan; Hov, Håkon; Coward, Eivind; Beisvag, Vidar; Myklebost, Ola; Hovig, Johannes Eivind; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda et al.. 2015, Blood Cancer Journal.
https://doi.org/10.1038/bcj.2015.24 (Academic article)
BRAF V600E mutation in early-stage multiple myeloma: good response to broad acting drugs and no relation to prognosis. Rustad, Even Holth; Dai, Hong Yan; Hov, Håkon; Coward, Eivind; Beisvag, Vidar; Myklebost, Ola; Hovig, Johannes Eivind; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda et al.. 2015, Blood Cancer Journal.
https://doi.org/10.1038/bcj.2015.24 (Academic article)
c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind; Sandve, Geir Kjetil F.; Gabrielsen, Odd Stokke & Eskeland, Ragnhild. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0133280 (Academic article)
c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind; Sandve, Geir Kjetil F.; Gabrielsen, Odd Stokke & Eskeland, Ragnhild. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0133280 (Academic article)
Cancer incidence and survival in Lynch syndrome patients receiving colonoscopic and gynaecological surveillance: first report from the prospective Lynch syndrome database. Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D Gareth; Lindblom, Annika; Macrae, Finlay A.; Blanco, Ignacio; Sijmons, Rolf et al.. 2015, Gut.
https://doi.org/10.1136/gutjnl-2015-309675 (Academic article)
Cancer incidence and survival in Lynch syndrome patients receiving colonoscopic and gynaecological surveillance: first report from the prospective Lynch syndrome database. Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D Gareth; Lindblom, Annika; Macrae, Finlay A.; Blanco, Ignacio; Sijmons, Rolf et al.. 2015, Gut.
https://doi.org/10.1136/gutjnl-2015-309675 (Academic article)
Canine Mammary Tumours Are Affected by Frequent Copy Number Aberrations, including Amplification of MYC and Loss of PTEN. Borge, Kaja Sverdrup; Nord, Silje H.; Van Loo, Peter; Lingjærde, Ole Christian; Gunnes, Gjermund; Grenaker, Grethe Irene; Solvang, Hiroko Kato; Luders, Torben; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0126371 (Academic article)
Canine Mammary Tumours Are Affected by Frequent Copy Number Aberrations, including Amplification of MYC and Loss of PTEN. Borge, Kaja Sverdrup; Nord, Silje H.; Van Loo, Peter; Lingjærde, Ole Christian; Gunnes, Gjermund; Grenaker, Grethe Irene; Solvang, Hiroko Kato; Luders, Torben; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0126371 (Academic article)
CD14 and complement crosstalk and largely mediate the transcriptional response to Escherichia coli in human whole blood as revealed by DNA microarray. Lau, Corinna; Nygård, Ståle; Fure, Hilde; Olstad, Ole Kristoffer; Holden, Marit; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0117261 (Academic article)
CD14 and complement crosstalk and largely mediate the transcriptional response to Escherichia coli in human whole blood as revealed by DNA microarray. Lau, Corinna; Nygård, Ståle; Fure, Hilde; Olstad, Ole Kristoffer; Holden, Marit; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0117261 (Academic article)
ClusTrack: Feature extraction and similarity measures for clustering of genome-wide data sets. Rydbeck, Halfdan; Sandve, Geir Kjetil F.; Ferkingstad, Egil; Simovski, Boris; Rye, Morten Beck & Hovig, Johannes Eivind. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0123261 (Academic article)
ClusTrack: Feature extraction and similarity measures for clustering of genome-wide data sets. Rydbeck, Halfdan; Sandve, Geir Kjetil F.; Ferkingstad, Egil; Simovski, Boris; Rye, Morten Beck & Hovig, Johannes Eivind. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0123261 (Academic article)
Combining MYC, BCL2 and TP53 gene and protein expression alterations improves risk stratification in diffuse large B-cell lymphoma. Fiskvik, Idun Hege; Beiske, Klaus; Delabie, Jan; Yri, Olav Erich; Spetalen, Signe; Karjalainen-Lindsberg, Marja-Liisa; Leppä, Sirpa; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2015, Leukemia and Lymphoma.
https://doi.org/10.3109/10428194.2014.970550 (Academic article)
Combining MYC, BCL2 and TP53 gene and protein expression alterations improves risk stratification in diffuse large B-cell lymphoma. Fiskvik, Idun Hege; Beiske, Klaus; Delabie, Jan; Yri, Olav Erich; Spetalen, Signe; Karjalainen-Lindsberg, Marja-Liisa; Leppä, Sirpa; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2015, Leukemia and Lymphoma.
https://doi.org/10.3109/10428194.2014.970550 (Academic article)
Computerized image analysis of the Ki-67 proliferation index in mantle cell lymphoma. Blaker, Yngvild Nuvin; Brodtkorb, Marianne; Maddison, John; Hveem, Tarjei Sveinsgjerd; Nesheim, John Arne; Mohn, Hans Martin; Kolstad, Arne; Geisler, Christian H.; Liestøl, Knut; Smeland, Erlend B et al.. 2015, Histopathology.
https://doi.org/10.1111/his.12624 (Academic article)
Computerized image analysis of the Ki-67 proliferation index in mantle cell lymphoma. Blaker, Yngvild Nuvin; Brodtkorb, Marianne; Maddison, John; Hveem, Tarjei Sveinsgjerd; Nesheim, John Arne; Mohn, Hans Martin; Kolstad, Arne; Geisler, Christian H.; Liestøl, Knut; Smeland, Erlend B et al.. 2015, Histopathology.
https://doi.org/10.1111/his.12624 (Academic article)
Discovery of recurrent mutations associated with chemo-immunotherapy relapse in diffuse large B-cell lymphoma. Wise, Jillian Frances; Nakken, Sigve; Vodak, Daniel; Trøen, Gunhild; Lingjærde, Ole Christian; Meza-Zepeda, Leonardo A; Myklebost, Ola; Beiske, Klaus; Myklebust, June Helene; Hovig, Eivind et al.. 2015, Blood.
https://doi.org/10.1182/blood.v126.23.110.110 (Academic article)
Discovery of recurrent mutations associated with chemo-immunotherapy relapse in diffuse large B-cell lymphoma. Wise, Jillian Frances; Nakken, Sigve; Vodak, Daniel; Trøen, Gunhild; Lingjærde, Ole Christian; Meza-Zepeda, Leonardo A; Myklebost, Ola; Beiske, Klaus; Myklebust, June Helene; Hovig, Eivind et al.. 2015, Blood.
https://doi.org/10.1182/blood.v126.23.110.110 (Academic article)
EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy. Ricigliano, Vito A. G.; Handel, Adam E; Sandve, Geir Kjetil F.; Annibali, Viviana; Ristori, Giovanni; Mechelli, Rosella; Cader, M.Zameel & Salvetti, Marco. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0119605 (Academic article)
EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy. Ricigliano, Vito A. G.; Handel, Adam E; Sandve, Geir Kjetil F.; Annibali, Viviana; Ristori, Giovanni; Mechelli, Rosella; Cader, M.Zameel & Salvetti, Marco. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0119605 (Academic article)
Gene expression profiling of Gram-negative bacteria-induced inflammation in human whole blood: The role of complement and CD14-mediated innate immune response. Lau, Corinna; Olstad, Ole Kristoffer; Holden, Marit; Nygård, Ståle; Fure, Hilde; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik. 2015, Genomics Data.
https://doi.org/10.1016/j.gdata.2015.05.019 (Academic article)
Gene expression profiling of Gram-negative bacteria-induced inflammation in human whole blood: The role of complement and CD14-mediated innate immune response. Lau, Corinna; Olstad, Ole Kristoffer; Holden, Marit; Nygård, Ståle; Fure, Hilde; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik. 2015, Genomics Data.
https://doi.org/10.1016/j.gdata.2015.05.019 (Academic article)
Glycan-related gene expression signatures in breast cancer subtypes; relation to survival. Potapenko, Ivan Olegovich; Luders, Torben; Russnes, Hege Elisabeth Giercksky; Helland, Åslaug; Sørlie, Therese; Kristensen, Vessela N.; Nordgard, Silje H.; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise & Haakensen, Vilde Drageset. 2015, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2014.12.013 (Academic article)
Glycan-related gene expression signatures in breast cancer subtypes; relation to survival. Potapenko, Ivan Olegovich; Luders, Torben; Russnes, Hege Elisabeth Giercksky; Helland, Åslaug; Sørlie, Therese; Kristensen, Vessela N.; Nordgard, Silje H.; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise & Haakensen, Vilde Drageset. 2015, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2014.12.013 (Academic article)
In the loop: promoter-enhancer interactions and bioinformatics. Mora Ortiz, Antonio Carlos; Sandve, Geir Kjetil; Gabrielsen, Odd Stokke & Eskeland, Ragnhild. 2015, Briefings in Bioinformatics.
https://doi.org/10.1093/bib/bbv097 (Academic literature review)
In the loop: promoter-enhancer interactions and bioinformatics. Mora Ortiz, Antonio Carlos; Sandve, Geir Kjetil; Gabrielsen, Odd Stokke & Eskeland, Ragnhild. 2015, Briefings in Bioinformatics.
https://doi.org/10.1093/bib/bbv097 (Academic literature review)
Integrated analysis reveals microRNA networks coordinately expressed with key proteins in breast cancer. Aure, Miriam Ragle; Jernström, Sandra Johanna; Krohn, Marit; Vollan, Hans Kristian Moen; Due, Eldri Undlien; Rødland, Einar Andreas; Kåresen, Rolf; Ram, Prahlad T.; Lu, Yiling; Mills, Gordon B. et al.. 2015, Genome Medicine.
https://doi.org/10.1186/s13073-015-0135-5 (Academic article)
Integrated analysis reveals microRNA networks coordinately expressed with key proteins in breast cancer. Aure, Miriam Ragle; Jernström, Sandra Johanna; Krohn, Marit; Vollan, Hans Kristian Moen; Due, Eldri Undlien; Rødland, Einar Andreas; Kåresen, Rolf; Ram, Prahlad T.; Lu, Yiling; Mills, Gordon B. et al.. 2015, Genome Medicine.
https://doi.org/10.1186/s13073-015-0135-5 (Academic article)
Investigation of established genetic risk variants for glioma in prediagnostic samples from a population-based nested case-control study. Wibom, Carl; Späth, Florentin; Dahlin, Anna M.; Langseth, Hilde; Hovig, Johannes Eivind; Rajaraman, Preetha; Johannesen, Tom Børge; Andersson, Ulrika & Melin, Beatrice. 2015, Cancer Epidemiology, Biomarkers and Prevention.
https://doi.org/10.1158/1055-9965.EPI-14-1106 (Academic article)
Investigation of established genetic risk variants for glioma in prediagnostic samples from a population-based nested case-control study. Wibom, Carl; Späth, Florentin; Dahlin, Anna M.; Langseth, Hilde; Hovig, Johannes Eivind; Rajaraman, Preetha; Johannesen, Tom Børge; Andersson, Ulrika & Melin, Beatrice. 2015, Cancer Epidemiology, Biomarkers and Prevention.
https://doi.org/10.1158/1055-9965.EPI-14-1106 (Academic article)
Molecular signatures of mRNAs and miRNAs as prognostic biomarkers in pancreatobiliary and intestinal types of periampullary adenocarcinomas. Sandhu, Vandana; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Lingjærde, Ole Christian; Buanes, Trond; Dalsgaard, Astrid Marie; Skrede, Martina; Hamfjord, Julian; Haaland, Therese Kristina; Eide, Tor Jacob et al.. 2015, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2014.12.002 (Academic article)
Molecular signatures of mRNAs and miRNAs as prognostic biomarkers in pancreatobiliary and intestinal types of periampullary adenocarcinomas. Sandhu, Vandana; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Lingjærde, Ole Christian; Buanes, Trond; Dalsgaard, Astrid Marie; Skrede, Martina; Hamfjord, Julian; Haaland, Therese Kristina; Eide, Tor Jacob et al.. 2015, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2014.12.002 (Academic article)
Monte Carlo Null Models for Genomic Data. Ferkingstad, Egil; Holden, Lars & Sandve, Geir Kjetil F.. 2015, Statistical Science.
https://doi.org/10.1214/14-STS484 (Academic article)
Monte Carlo Null Models for Genomic Data. Ferkingstad, Egil; Holden, Lars & Sandve, Geir Kjetil F.. 2015, Statistical Science.
https://doi.org/10.1214/14-STS484 (Academic article)
Non-homologous functions of the AlkB homologs. Ougland, Rune; Rognes, Torbjørn; Klungland, Arne & Larsen, Elisabeth. 2015, Journal of Molecular Cell Biology.
https://doi.org/10.1093/jmcb/mjv029 (Academic literature review)
Non-homologous functions of the AlkB homologs. Ougland, Rune; Rognes, Torbjørn; Klungland, Arne & Larsen, Elisabeth. 2015, Journal of Molecular Cell Biology.
https://doi.org/10.1093/jmcb/mjv029 (Academic literature review)
Radiotherapy compared to other strategies in the treatment of stage I/II follicular lymphoma: A study of 404 patients with a median follow-up of 15 years. Barzenje, Dlawer Abdulla; Småstuen, Milada C; Liestøl, Knut; Fosså, Alexander; Delabie, Jan; Kolstad, Arne & Holte, Harald. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0131158 (Academic article)
Radiotherapy compared to other strategies in the treatment of stage I/II follicular lymphoma: A study of 404 patients with a median follow-up of 15 years. Barzenje, Dlawer Abdulla; Småstuen, Milada C; Liestøl, Knut; Fosså, Alexander; Delabie, Jan; Kolstad, Arne & Holte, Harald. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0131158 (Academic article)
Regulator of chromosome condensation 2 identifies high-risk patients within both major phenotypes of colorectal cancer. Bruun, Jarle; Kolberg, Matthias; Ahlquist, Terje Cruickshank; Røyrvik, Ellen Christine; Nome, Torfinn; Leithe, Edward; Lind, Guro Elisabeth; Merok, Marianne Aarstad; Rognum, Torleiv Ole; Bjørkøy, Geir et al.. 2015, Clinical Cancer Research.
https://doi.org/10.1158/1078-0432.CCR-14-3294 (Academic article)
Regulator of chromosome condensation 2 identifies high-risk patients within both major phenotypes of colorectal cancer. Bruun, Jarle; Kolberg, Matthias; Ahlquist, Terje Cruickshank; Røyrvik, Ellen Christine; Nome, Torfinn; Leithe, Edward; Lind, Guro Elisabeth; Merok, Marianne Aarstad; Rognum, Torleiv Ole; Bjørkøy, Geir et al.. 2015, Clinical Cancer Research.
https://doi.org/10.1158/1078-0432.CCR-14-3294 (Academic article)
Serum N-glycome characterization in patients with resectable periampullary adenocarcinoma. Hamfjord, Julian; Saldova, Radka; Stockmann, Henning; Sandhu, Vandana; Lothe, Inger Marie Bowitz; Buanes, Trond; Lingjærde, Ole Christian; Labori, Knut Jørgen; Rudd, Pauline M & Kure, Elin H.. 2015, Journal of Proteome Research.
https://doi.org/10.1021/acs.jproteome.5b00395 (Academic article)
Serum N-glycome characterization in patients with resectable periampullary adenocarcinoma. Hamfjord, Julian; Saldova, Radka; Stockmann, Henning; Sandhu, Vandana; Lothe, Inger Marie Bowitz; Buanes, Trond; Lingjærde, Ole Christian; Labori, Knut Jørgen; Rudd, Pauline M & Kure, Elin H.. 2015, Journal of Proteome Research.
https://doi.org/10.1021/acs.jproteome.5b00395 (Academic article)
Src64 controls a novel actin network required for proper ring canal formation in the drosophila male germline. Eikenes, Åsmund Husabø; Malerød, Lene; Christensen, Anette Lie; Wegner, Catherine E Sem; Brech, Andreas; Liestøl, Knut; Stenmark, Harald Alfred & Haglund, Kaisa. 2015, Development.
https://doi.org/10.1242/dev.124370 (Academic article)
Src64 controls a novel actin network required for proper ring canal formation in the drosophila male germline. Eikenes, Åsmund Husabø; Malerød, Lene; Christensen, Anette Lie; Wegner, Catherine E Sem; Brech, Andreas; Liestøl, Knut; Stenmark, Harald Alfred & Haglund, Kaisa. 2015, Development.
https://doi.org/10.1242/dev.124370 (Academic article)
Structure, dynamics, and functionality of tankyrase inhibitor-induced degradasomes. Thorvaldsen, Tor Espen; Pedersen, Nina Marie; Wenzel, Eva; Schultz, Sebastian; Brech, Andreas; Liestøl, Knut; Waaler, Jo; Krauss, Stefan & Stenmark, Harald Alfred. 2015, Molecular Cancer Research.
https://doi.org/10.1158/1541-7786.MCR-15-0125 (Academic article)
Structure, dynamics, and functionality of tankyrase inhibitor-induced degradasomes. Thorvaldsen, Tor Espen; Pedersen, Nina Marie; Wenzel, Eva; Schultz, Sebastian; Brech, Andreas; Liestøl, Knut; Waaler, Jo; Krauss, Stefan & Stenmark, Harald Alfred. 2015, Molecular Cancer Research.
https://doi.org/10.1158/1541-7786.MCR-15-0125 (Academic article)
Swarm v2: highly-scalable and high-resolution amplicon clustering. Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah. 2015, PeerJ.
https://doi.org/10.7717/peerj.1420 (Academic article)
Swarm v2: highly-scalable and high-resolution amplicon clustering. Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah. 2015, PeerJ.
https://doi.org/10.7717/peerj.1420 (Academic article)
Ten modifiers of BRCA1 penetrance validated in a Norwegian series. Heramb, Cecilie; Ekstrøm, Per Olaf; Tharmaratnam, Kukatharmini; Hovig, Johannes Eivind; Møller, Pål & Mæhle, Lovise Olaug. 2015, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-015-0035-0 (Academic article)
Ten modifiers of BRCA1 penetrance validated in a Norwegian series. Heramb, Cecilie; Ekstrøm, Per Olaf; Tharmaratnam, Kukatharmini; Hovig, Johannes Eivind; Møller, Pål & Mæhle, Lovise Olaug. 2015, Hereditary Cancer in Clinical Practice.
https://doi.org/10.1186/s13053-015-0035-0 (Academic article)
Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis. Kraus, Hanne Irene; Sandve, Geir Kjetil F.; Schmitz, Martina; Dürst, Matthias & Hovig, Johannes Eivind. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0119566 (Academic article)
Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis. Kraus, Hanne Irene; Sandve, Geir Kjetil F.; Schmitz, Martina; Dürst, Matthias & Hovig, Johannes Eivind. 2015, PLOS ONE.
https://doi.org/10.1371/journal.pone.0119566 (Academic article)
Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway. Yang, Mingyi; Lin, Xiaolin; Rowe, Alexander D.; Rognes, Torbjørn; Eide, Lars & Bjørås, Magnar. 2015, Scientific Reports.
https://doi.org/10.1038/srep17409 (Academic article)
Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway. Yang, Mingyi; Lin, Xiaolin; Rowe, Alexander D.; Rognes, Torbjørn; Eide, Lars & Bjørås, Magnar. 2015, Scientific Reports.
https://doi.org/10.1038/srep17409 (Academic article)
Translocational renal cell carcinoma (t(6;11)(p21;q12) with transcription factor EB (TFEB) amplification and an integrated precision approach: A case report. Lilleby, Wolfgang; Vlatkovic, Ljiljana; Meza, Leonardo Zepeda; Revheim, Mona Elisabeth & Hovig, Johannes Eivind. 2015, Journal of Medical Case Reports.
https://doi.org/10.1186/s13256-015-0749-7 (Short communication)
Translocational renal cell carcinoma (t(6;11)(p21;q12) with transcription factor EB (TFEB) amplification and an integrated precision approach: A case report. Lilleby, Wolfgang; Vlatkovic, Ljiljana; Meza, Leonardo Zepeda; Revheim, Mona Elisabeth & Hovig, Johannes Eivind. 2015, Journal of Medical Case Reports.
https://doi.org/10.1186/s13256-015-0749-7 (Short communication)
Tumor expression, plasma levels and genetic polymorphisms of the coagulation inhibitor TFPI are associated with clinicopathological parameters and survival in breast cancer, in contrast to the coagulation initiator TF. Tinholt, Mari; Vollan, Hans Kristian Moen; Sahlberg, Kristine Kleivi; Jernström, Sandra Johanna; Kaveh, Fatemeh; Lingjærde, Ole Christian; Kåresen, Rolf; Sauer, Torill; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2015, Breast Cancer Research.
https://doi.org/10.1186/s13058-015-0548-5 (Academic article)
Tumor expression, plasma levels and genetic polymorphisms of the coagulation inhibitor TFPI are associated with clinicopathological parameters and survival in breast cancer, in contrast to the coagulation initiator TF. Tinholt, Mari; Vollan, Hans Kristian Moen; Sahlberg, Kristine Kleivi; Jernström, Sandra Johanna; Kaveh, Fatemeh; Lingjærde, Ole Christian; Kåresen, Rolf; Sauer, Torill; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2015, Breast Cancer Research.
https://doi.org/10.1186/s13058-015-0548-5 (Academic article)
Using adrenaline during neonatal resuscitation may have an impact on serum cardiac troponin-T levels. Helmer, Caroline; Skranes, Janne Helen; Liestøl, Knut & Fugelseth, Drude. 2015, Acta Paediatrica.
https://doi.org/10.1111/apa.13055 (Academic article)
Using adrenaline during neonatal resuscitation may have an impact on serum cardiac troponin-T levels. Helmer, Caroline; Skranes, Janne Helen; Liestøl, Knut & Fugelseth, Drude. 2015, Acta Paediatrica.
https://doi.org/10.1111/apa.13055 (Academic article)
Whole-genome copy number analyses of NSCLC tumors reveal aberrations associated with EGFR mutations and may have prognostic impact. Bjaanæs, Maria Moksnes; Nilsen, Gro; Solberg, Steinar; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2015, Journal of Thoracic Oncology.
(Academic article)
Whole-genome copy number analyses of NSCLC tumors reveal aberrations associated with EGFR mutations and may have prognostic impact. Bjaanæs, Maria Moksnes; Nilsen, Gro; Solberg, Steinar; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2015, Journal of Thoracic Oncology.
(Academic article)
2014
A gene panel, including LRP12, is frequently hypermethylated in major types of B-cell lymphoma. Bethge, Nicole; Honne, Hilde; Andresen, Kim; Hilden, Vera Irene; Trøen, Gunhild; Liestøl, Knut; Holte, Harald; Delabie, Jan; Lind, Guro Elisabeth & Smeland, Erlend B. 2014, PLOS ONE.
https://doi.org/10.1371/journal.pone.0104249 (Academic article)
A gene panel, including LRP12, is frequently hypermethylated in major types of B-cell lymphoma. Bethge, Nicole; Honne, Hilde; Andresen, Kim; Hilden, Vera Irene; Trøen, Gunhild; Liestøl, Knut; Holte, Harald; Delabie, Jan; Lind, Guro Elisabeth & Smeland, Erlend B. 2014, PLOS ONE.
https://doi.org/10.1371/journal.pone.0104249 (Academic article)
A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions. Paulsen, Jonas; Rødland, Einar Andreas; Holden, Lars; Holden, Marit & Hovig, Johannes Eivind. 2014, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gku738 (Academic article)
A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions. Paulsen, Jonas; Rødland, Einar Andreas; Holden, Lars; Holden, Marit & Hovig, Johannes Eivind. 2014, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gku738 (Academic article)
ANCHR mediates Aurora-B-dependent abscission checkpoint control through retention of VPS4. Thoresen, Sigrid Bratlie; Campsteijn, Coen; Vietri, Marina; Schink, Kay Oliver; Liestøl, Knut; Andersen, Jens S.; Raiborg, Camilla & Stenmark, Harald. 2014, Nature Cell Biology.
https://doi.org/10.1038/ncb2959 (Academic article)
ANCHR mediates Aurora-B-dependent abscission checkpoint control through retention of VPS4. Thoresen, Sigrid Bratlie; Campsteijn, Coen; Vietri, Marina; Schink, Kay Oliver; Liestøl, Knut; Andersen, Jens S.; Raiborg, Camilla & Stenmark, Harald. 2014, Nature Cell Biology.
https://doi.org/10.1038/ncb2959 (Academic article)
Breast cancer stromal elastosis is associated with mammography screening detection, low Ki67 expression and favourable prognosis in a population-based study. Chen, Ying; Klingen, Tor Audun; Wik, Elisabeth; Aas, Hans; Vigeland, Einar; Liestøl, Knut; Garred, Øystein; Mæhlen, Jan; Akslen, Lars A. & Lømo, Jon. 2014, Diagnostic Pathology.
https://doi.org/10.1186/s13000-014-0230-8 (Academic article)
Breast cancer stromal elastosis is associated with mammography screening detection, low Ki67 expression and favourable prognosis in a population-based study. Chen, Ying; Klingen, Tor Audun; Wik, Elisabeth; Aas, Hans; Vigeland, Einar; Liestøl, Knut; Garred, Øystein; Mæhlen, Jan; Akslen, Lars A. & Lømo, Jon. 2014, Diagnostic Pathology.
https://doi.org/10.1186/s13000-014-0230-8 (Academic article)
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A & Drabløs, Finn. 2014, BMC Genomics.
https://doi.org/10.1186/1471-2164-15-120 (Academic article)
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A & Drabløs, Finn. 2014, BMC Genomics.
https://doi.org/10.1186/1471-2164-15-120 (Academic article)
Colorectal cancer DNA methylation marker panel validated with high performance in Non-Hodgkin lymphoma. Bethge, Nicole; Lothe, Ragnhild A; Honne, Hilde; Andresen, Kim; Trøen, Gunhild; Eknæs, Mette; Liestøl, Knut; Holte, Harald; Delabie, Jan; Smeland, Erlend B et al.. 2014, Epigenetics.
https://doi.org/10.4161/epi.27554 (Academic article)
Colorectal cancer DNA methylation marker panel validated with high performance in Non-Hodgkin lymphoma. Bethge, Nicole; Lothe, Ragnhild A; Honne, Hilde; Andresen, Kim; Trøen, Gunhild; Eknæs, Mette; Liestøl, Knut; Holte, Harald; Delabie, Jan; Smeland, Erlend B et al.. 2014, Epigenetics.
https://doi.org/10.4161/epi.27554 (Academic article)
Differential protein network analysis of the immune cell lineage. Clancy, Trevor & Hovig, Johannes Eivind. 2014, BioMed Research International.
https://doi.org/10.1155/2014/363408 (Academic article)
Differential protein network analysis of the immune cell lineage. Clancy, Trevor & Hovig, Johannes Eivind. 2014, BioMed Research International.
https://doi.org/10.1155/2014/363408 (Academic article)
DNase hypersensitive sites and association with multiple sclerosisxs. Disanto, Giulio; Sandve, Geir Kjetil; Ricigliano, Vito AG; Pakpoor, Julia; Berlanga-Taylor, Antonio; Handel, Adam E; Kuhle, Jens; Holden, Lars; Watson, Corey T; Giovannoni, Gavin et al.. 2014, Human Molecular Genetics.
https://doi.org/10.1093/hmg/ddt489 (Academic article)
DNase hypersensitive sites and association with multiple sclerosisxs. Disanto, Giulio; Sandve, Geir Kjetil; Ricigliano, Vito AG; Pakpoor, Julia; Berlanga-Taylor, Antonio; Handel, Adam E; Kuhle, Jens; Holden, Lars; Watson, Corey T; Giovannoni, Gavin et al.. 2014, Human Molecular Genetics.
https://doi.org/10.1093/hmg/ddt489 (Academic article)
From proteomes to complexomes in the era of systems biology. Clancy, Trevor & Hovig, Johannes Eivind. 2014, Proteomics.
https://doi.org/10.1002/pmic.201300230 (Academic literature review)
From proteomes to complexomes in the era of systems biology. Clancy, Trevor & Hovig, Johannes Eivind. 2014, Proteomics.
https://doi.org/10.1002/pmic.201300230 (Academic literature review)
Genomic copy number changes and the prognostic impact of the encoded genes PTEN and BIRC5 in malignant peripheral nerve sheath tumours. Høland, Maren; Kolberg, Mathias; Davidson, Ben; Sundby Hall, Kirsten; Mertens, Fredrik; van den Berg, E; Smeland, Sigbjørn; Picci, Piero; Lingjærde, Ole Christian & Lothe, Ragnhild A. 2014, European Journal of Cancer.
(Abstract)
Genomic copy number changes and the prognostic impact of the encoded genes PTEN and BIRC5 in malignant peripheral nerve sheath tumours. Høland, Maren; Kolberg, Mathias; Davidson, Ben; Sundby Hall, Kirsten; Mertens, Fredrik; van den Berg, E; Smeland, Sigbjørn; Picci, Piero; Lingjærde, Ole Christian & Lothe, Ragnhild A. 2014, European Journal of Cancer.
(Abstract)
HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization. Paulsen, Jonas; Sandve, Geir Kjetil F.; Gundersen, Sveinung; Lien, Tonje Gulbrandsen; Trengereid, Kai & Hovig, Johannes Eivind. 2014, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btu082 (Academic article)
HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization. Paulsen, Jonas; Sandve, Geir Kjetil F.; Gundersen, Sveinung; Lien, Tonje Gulbrandsen; Trengereid, Kai & Hovig, Johannes Eivind. 2014, Bioinformatics.
https://doi.org/10.1093/bioinformatics/btu082 (Academic article)
High dose chemotherapy with autologous stem cell transplant for patients with transformed B-cell non-Hodgkin lymphoma in the rituximab era. Blaker, Yngvild Nuvin; Eide, Marianne Brodtkorb; Liestøl, Knut; Lauritzsen, Grete Fossum; Kolstad, Arne; Fosså, Alexander; Smeland, Erlend B & Holte, Harald. 2014, Leukemia and Lymphoma.
https://doi.org/10.3109/10428194.2013.871632 (Academic article)
High dose chemotherapy with autologous stem cell transplant for patients with transformed B-cell non-Hodgkin lymphoma in the rituximab era. Blaker, Yngvild Nuvin; Eide, Marianne Brodtkorb; Liestøl, Knut; Lauritzsen, Grete Fossum; Kolstad, Arne; Fosså, Alexander; Smeland, Erlend B & Holte, Harald. 2014, Leukemia and Lymphoma.
https://doi.org/10.3109/10428194.2013.871632 (Academic article)
High rate of per oral mecillinam treatment failure in community-acquired urinary tract infections caused by ESBL-producing escherichia coli. Søraas, Arne Vasli Lund; Sundsfjord, Arnfinn; Jørgensen, Silje Bakken; Liestøl, Knut & Jenum, Pål. 2014, PLOS ONE.
https://doi.org/10.1371/journal.pone.0085889 (Academic article)
High rate of per oral mecillinam treatment failure in community-acquired urinary tract infections caused by ESBL-producing escherichia coli. Søraas, Arne Vasli Lund; Sundsfjord, Arnfinn; Jørgensen, Silje Bakken; Liestøl, Knut & Jenum, Pål. 2014, PLOS ONE.
https://doi.org/10.1371/journal.pone.0085889 (Academic article)
Human somatic cell mutagenesis creates genetically tractable sarcomas. Molyneux, Sam; Waterhouse, PD; Shelton, Dawne; Shao, Yang W; Watling, Christopher M; Tang, Qing-Lian; Harris, Isaac S; Dickson, Brendan C; Tharmapalan, Pirashaanthy; Sandve, Geir Kjetil F. et al.. 2014, Nature Genetics.
https://doi.org/10.1038/ng.3065 (Academic article)
Human somatic cell mutagenesis creates genetically tractable sarcomas. Molyneux, Sam; Waterhouse, PD; Shelton, Dawne; Shao, Yang W; Watling, Christopher M; Tang, Qing-Lian; Harris, Isaac S; Dickson, Brendan C; Tharmapalan, Pirashaanthy; Sandve, Geir Kjetil F. et al.. 2014, Nature Genetics.
https://doi.org/10.1038/ng.3065 (Academic article)
Identifying pathogenic processes by integrating microarray data with prior knowledge. Nygård, Ståle; Reitan, Trond; Clancy, Trevor; Nygaard, Vegard; BJØRNSTAD, JOHANNES; Skrbic, Biljana; Tønnessen, Theis; Christensen, Geir Arve & Hovig, Johannes Eivind. 2014, BMC Bioinformatics.
https://doi.org/10.1186/1471-2105-15-115 (Academic article)
Identifying pathogenic processes by integrating microarray data with prior knowledge. Nygård, Ståle; Reitan, Trond; Clancy, Trevor; Nygaard, Vegard; BJØRNSTAD, JOHANNES; Skrbic, Biljana; Tønnessen, Theis; Christensen, Geir Arve & Hovig, Johannes Eivind. 2014, BMC Bioinformatics.
https://doi.org/10.1186/1471-2105-15-115 (Academic article)
Integrative analysis reveals extensive association between microRNA expression and mRNA−protein translation. Aure, Miriam Ragle; Jernstrøm, Sandra; Krohn, Marit; Due, Eldri Undlien; consortium, OSBREAC; Mills, Gordon B.; Børresen-Dale, Anne-Lise ; Sahlberg, Kristine Kleivi; Lingjærde, Ole Christian; Kristensen, Vessela Nedelcheva et al.. 2014, European Journal of Cancer.
(Abstract)
Integrative analysis reveals extensive association between microRNA expression and mRNA−protein translation. Aure, Miriam Ragle; Jernstrøm, Sandra; Krohn, Marit; Due, Eldri Undlien; consortium, OSBREAC; Mills, Gordon B.; Børresen-Dale, Anne-Lise ; Sahlberg, Kristine Kleivi; Lingjærde, Ole Christian; Kristensen, Vessela Nedelcheva et al.. 2014, European Journal of Cancer.
(Abstract)
Melanoma brain colonization involves the emergence of a brain-adaptive phenotype. Nygaard, Vigdis; Prasmickaite, Lina; Vasiliauskaite, Kotryna; Clancy, Trevor & Hovig, Johannes Eivind. 2014, Oncoscience.
https://doi.org/10.18632/oncoscience.11 (Academic article)
Melanoma brain colonization involves the emergence of a brain-adaptive phenotype. Nygaard, Vigdis; Prasmickaite, Lina; Vasiliauskaite, Kotryna; Clancy, Trevor & Hovig, Johannes Eivind. 2014, Oncoscience.
https://doi.org/10.18632/oncoscience.11 (Academic article)
Myocardial function in term and preterm infants. Influence of heart size, gestational age and postnatal maturation. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2014, Early Human Development.
https://doi.org/10.1016/j.earlhumdev.2014.04.010 (Academic article)
Myocardial function in term and preterm infants. Influence of heart size, gestational age and postnatal maturation. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2014, Early Human Development.
https://doi.org/10.1016/j.earlhumdev.2014.04.010 (Academic article)
Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels. Aanes, Håvard; Winata, Cecilia L.; Moen, Lars Fredrik; Østrup, Olga; Mathavan, Sinnakaruppan; Collas, Philippe; Rognes, Torbjørn & Alestrøm, Peter. 2014, PLOS ONE.
https://doi.org/10.1371/journal.pone.0089158 (Academic article)
Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels. Aanes, Håvard; Winata, Cecilia L.; Moen, Lars Fredrik; Østrup, Olga; Mathavan, Sinnakaruppan; Collas, Philippe; Rognes, Torbjørn & Alestrøm, Peter. 2014, PLOS ONE.
https://doi.org/10.1371/journal.pone.0089158 (Academic article)
Performance comparison of four exome capture systems for deep sequencing. Chilamakuri, Chandra Sekhar Reddy; Lorenz, Susanne; Madoui, Mohammed-Amin; Vodak, Daniel; Sun, Jinchang; Hovig, Johannes Eivind; Myklebost, Ola & Meza, Leonardo Zepeda. 2014, BMC Genomics.
https://doi.org/10.1186/1471-2164-15-449 (Academic article)
Performance comparison of four exome capture systems for deep sequencing. Chilamakuri, Chandra Sekhar Reddy; Lorenz, Susanne; Madoui, Mohammed-Amin; Vodak, Daniel; Sun, Jinchang; Hovig, Johannes Eivind; Myklebost, Ola & Meza, Leonardo Zepeda. 2014, BMC Genomics.
https://doi.org/10.1186/1471-2164-15-449 (Academic article)
Photoactivation Approaches Reveal a Role for Rab11 in FGFR4 Recycling and Signalling. Haugsten, Ellen Margrethe; Brech, Andreas; Liestøl, Knut; Norman, Jim C. & Wesche, Jørgen. 2014, Traffic: The moving front of cell biology.
https://doi.org/10.1111/tra.12168 (Academic article)
Photoactivation Approaches Reveal a Role for Rab11 in FGFR4 Recycling and Signalling. Haugsten, Ellen Margrethe; Brech, Andreas; Liestøl, Knut; Norman, Jim C. & Wesche, Jørgen. 2014, Traffic: The moving front of cell biology.
https://doi.org/10.1111/tra.12168 (Academic article)
Plasma microRNAs predicting clinical outcome in metastatic colorectal cancer patients receiving first-line oxaliplatin-based treatment. Kjersem, Janne Beathe; Ikdahl, Tone; Lingjærde, Ole Christian; Guren, Tormod Kyrre; Tveit, Magne Kjell & Kure, Elin H.. 2014, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2013.09.001 (Academic article)
Plasma microRNAs predicting clinical outcome in metastatic colorectal cancer patients receiving first-line oxaliplatin-based treatment. Kjersem, Janne Beathe; Ikdahl, Tone; Lingjærde, Ole Christian; Guren, Tormod Kyrre; Tveit, Magne Kjell & Kure, Elin H.. 2014, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2013.09.001 (Academic article)
Postmortem heart weight: relation to body size and effects of cardiovascular disease and cancer. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael & Mæhlen, Jan. 2014, Cardiovascular pathology.
https://doi.org/10.1016/j.carpath.2013.09.001 (Academic article)
Postmortem heart weight: relation to body size and effects of cardiovascular disease and cancer. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael & Mæhlen, Jan. 2014, Cardiovascular pathology.
https://doi.org/10.1016/j.carpath.2013.09.001 (Academic article)
Principles and methods of integrative genomic analyses in cancer. Kristensen, Vessela N.; Lingjærde, Ole Christian; Russnes, Hege Elisabeth Giercksky; Vollan, Hans Kristian Moen; Frigessi, Arnoldo & Børresen-Dale, Anne-Lise . 2014, Nature Reviews Cancer.
https://doi.org/10.1038/nrc3721 (Academic literature review)
Principles and methods of integrative genomic analyses in cancer. Kristensen, Vessela N.; Lingjærde, Ole Christian; Russnes, Hege Elisabeth Giercksky; Vollan, Hans Kristian Moen; Frigessi, Arnoldo & Børresen-Dale, Anne-Lise . 2014, Nature Reviews Cancer.
https://doi.org/10.1038/nrc3721 (Academic literature review)
Prognostic impact of genomic instability in colorectal cancer. Hveem, Tarjei Sveinsgjerd; Merok, Marianne Aarstad; Pretorius, Maria; Novelli, Marco; Silihagen, Mette; Sjo, Ole Helmer; Clinch, N; Liestøl, Knut; Svindland, Aud; Lothe, Ragnhild A et al.. 2014, British Journal of Cancer.
https://doi.org/10.1038/bjc.2014.133 (Academic article)
Prognostic impact of genomic instability in colorectal cancer. Hveem, Tarjei Sveinsgjerd; Merok, Marianne Aarstad; Pretorius, Maria; Novelli, Marco; Silihagen, Mette; Sjo, Ole Helmer; Clinch, N; Liestøl, Knut; Svindland, Aud; Lothe, Ragnhild A et al.. 2014, British Journal of Cancer.
https://doi.org/10.1038/bjc.2014.133 (Academic article)
Swarm: robust and fast clustering method for amplicon-based studies. Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah. 2014, PeerJ.
https://doi.org/10.7717/peerj.593 (Academic article)
Swarm: robust and fast clustering method for amplicon-based studies. Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah. 2014, PeerJ.
https://doi.org/10.7717/peerj.593 (Academic article)
Systematic assessment of prognostic gene signatures for breast cancer shows distinct influence of time and ER status. Zhao, Xi; Rødland, Einar Andreas; Sørlie, Therese; Vollan, Hans Kristian Moen; Russnes, Hege Elisabeth Giercksky; Kristensen, Vessela N.; Lingjærde, Ole Christian & Børresen-Dale, Anne-Lise . 2014, BMC Cancer.
https://doi.org/10.1186/1471-2407-14-211 (Academic article)
Systematic assessment of prognostic gene signatures for breast cancer shows distinct influence of time and ER status. Zhao, Xi; Rødland, Einar Andreas; Sørlie, Therese; Vollan, Hans Kristian Moen; Russnes, Hege Elisabeth Giercksky; Kristensen, Vessela N.; Lingjærde, Ole Christian & Børresen-Dale, Anne-Lise . 2014, BMC Cancer.
https://doi.org/10.1186/1471-2407-14-211 (Academic article)
The multitude of molecular analyses in cancer: the opening of Pandora’s box. Russnes, Hege Elisabeth Giercksky; Lønning, Per Eystein; Børresen-Dale, Anne-Lise & Lingjærde, Ole Christian. 2014, Genome Biology.
https://doi.org/10.1186/s13059-014-0447-6 (Academic article)
The multitude of molecular analyses in cancer: the opening of Pandora’s box. Russnes, Hege Elisabeth Giercksky; Lønning, Per Eystein; Børresen-Dale, Anne-Lise & Lingjærde, Ole Christian. 2014, Genome Biology.
https://doi.org/10.1186/s13059-014-0447-6 (Academic article)
Tissue Doppler imaging in very preterm infants during the first 24 h of life: an observational study. Lee, Anja; Nestaas, Eirik; Liestøl, Knut; Brunvand, Leif; Lindemann, Rolf & Fugelseth, Drude . 2014, Archives of Disease in Childhood: Fetal and Neonatal Edition.
https://doi.org/10.1136/archdischild-2013-304197 (Academic article)
Tissue Doppler imaging in very preterm infants during the first 24 h of life: an observational study. Lee, Anja; Nestaas, Eirik; Liestøl, Knut; Brunvand, Leif; Lindemann, Rolf & Fugelseth, Drude . 2014, Archives of Disease in Childhood: Fetal and Neonatal Edition.
https://doi.org/10.1136/archdischild-2013-304197 (Academic article)
Whole-genome integrative analysis reveals expression signatures predicting transformation in follicular lymphoma. Brodtkorb, Marianne; Lingjærde, Ole Christian; Huse, Kanutte; Trøen, Gunhild; Hystad, Marit Elise; Hilden, Vera Irene; Myklebust, June; Leich, Ellen; Rosenwald, Andreas; Delabie, Jan et al.. 2014, Blood.
https://doi.org/10.1182/blood-2013-07-512392 (Academic article)
Whole-genome integrative analysis reveals expression signatures predicting transformation in follicular lymphoma. Brodtkorb, Marianne; Lingjærde, Ole Christian; Huse, Kanutte; Trøen, Gunhild; Hystad, Marit Elise; Hilden, Vera Irene; Myklebust, June; Leich, Ellen; Rosenwald, Andreas; Delabie, Jan et al.. 2014, Blood.
https://doi.org/10.1182/blood-2013-07-512392 (Academic article)
2013
A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures. Backe, Paul Hoff; Simm, Roger; Lærdahl, Jon Kristen; Dalhus, Bjørn; Fagerlund, Annette; Økstad, Ole Andreas Løchen; Rognes, Torbjørn; Alseth, Ingrun; Kolstø, Anne-Brit & Bjørås, Magnar. 2013, Journal of Structural Biology.
https://doi.org/10.1016/j.jsb.2013.04.007 (Academic article)
A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures. Backe, Paul Hoff; Simm, Roger; Lærdahl, Jon Kristen; Dalhus, Bjørn; Fagerlund, Annette; Økstad, Ole Andreas Løchen; Rognes, Torbjørn; Alseth, Ingrun; Kolstø, Anne-Brit & Bjørås, Magnar. 2013, Journal of Structural Biology.
https://doi.org/10.1016/j.jsb.2013.04.007 (Academic article)
Bioinformatics in genomics. Hovig, Johannes Eivind; Nakken, S; Clancy, T; Paulsen, J; Gundersen, S; Lien, T; Glad, I; Nygard, S; Frigessi, A & Sandve, GK. 2013, European Journal of Cancer.
(Abstract)
Bioinformatics in genomics. Hovig, Johannes Eivind; Nakken, S; Clancy, T; Paulsen, J; Gundersen, S; Lien, T; Glad, I; Nygard, S; Frigessi, A & Sandve, GK. 2013, European Journal of Cancer.
(Abstract)
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer. Schee, Kristina; Lorenz, Susanne; Worren, Merete Molton; Günther, Clara-Cecilie; Holden, Marit; Hovig, Johannes Eivind; Fodstad, Øystein; Meza, Leonardo Zepeda & Flatmark, Kjersti. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0066165 (Academic article)
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer. Schee, Kristina; Lorenz, Susanne; Worren, Merete Molton; Günther, Clara-Cecilie; Holden, Marit; Hovig, Johannes Eivind; Fodstad, Øystein; Meza, Leonardo Zepeda & Flatmark, Kjersti. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0066165 (Academic article)
Enhancing nucleic acid delivery by photochemical internalization. Bøe, Sigurd & Hovig, Eivind. 2013, Therapeutic delivery.
https://doi.org/10.4155/tde.13.78 (Academic literature review)
Enhancing nucleic acid delivery by photochemical internalization. Bøe, Sigurd & Hovig, Eivind. 2013, Therapeutic delivery.
https://doi.org/10.4155/tde.13.78 (Academic literature review)
Evaluation of Biodegradable Peptide Carriers for Light-Directed Targeting. Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Hovig, Johannes Eivind & Bøe, Sigurd. 2013, Nucleic Acid Therapeutics.
https://doi.org/10.1089/nat.2012.0403 (Academic article)
Evaluation of Biodegradable Peptide Carriers for Light-Directed Targeting. Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Hovig, Johannes Eivind & Bøe, Sigurd. 2013, Nucleic Acid Therapeutics.
https://doi.org/10.1089/nat.2012.0403 (Academic article)
Evolutionary Paths of the cAMP-Dependent Protein Kinase (PKA) Catalytic Subunits. Søberg, Kristoffer; Jahnsen, Tore; Rognes, Torbjørn; Skålhegg, Bjørn Steen & Lærdahl, Jon Kristen. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0060935 (Academic article)
Evolutionary Paths of the cAMP-Dependent Protein Kinase (PKA) Catalytic Subunits. Søberg, Kristoffer; Jahnsen, Tore; Rognes, Torbjørn; Skålhegg, Bjørn Steen & Lærdahl, Jon Kristen. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0060935 (Academic article)
Flotillins as regulators of ErbB2 levels in breast cancer. Pust, Sascha; Klokk, Tove Irene; Musa, Nagham; Jenstad, Monica; Risberg, Bjørn Åke; Erikstein, Bjørn K; Tcatchoff, Lionel; Liestøl, Knut; Danielsen, Håvard Emil; van Deurs, Bo et al.. 2013, Oncogene.
https://doi.org/10.1038/onc.2012.357 (Academic article)
Flotillins as regulators of ErbB2 levels in breast cancer. Pust, Sascha; Klokk, Tove Irene; Musa, Nagham; Jenstad, Monica; Risberg, Bjørn Åke; Erikstein, Bjørn K; Tcatchoff, Lionel; Liestøl, Knut; Danielsen, Håvard Emil; van Deurs, Bo et al.. 2013, Oncogene.
https://doi.org/10.1038/onc.2012.357 (Academic article)
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements. Paulsen, Jonas; Lien, Tonje Gulbrandsen; Sandve, Geir Kjetil; Holden, Lars; Borgan, Ørnulf; Glad, Ingrid Kristine & Hovig, Johannes Eivind. 2013, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkt227 (Academic article)
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements. Paulsen, Jonas; Lien, Tonje Gulbrandsen; Sandve, Geir Kjetil; Holden, Lars; Borgan, Ørnulf; Glad, Ingrid Kristine & Hovig, Johannes Eivind. 2013, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkt227 (Academic article)
High Levels of Genomic Aberrations in Serous Ovarian Cancers Are Associated with Better Survival. Baumbusch, Lars Oliver; Helland, Åslaug; Wang, Yun; Liestøl, Knut; Schaner, M.E.; Holm, Ruth; Etemadmoghadam, D; Alsop, Kathryn; Brown, Pat; Mitchell, Gillian et al.. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0054356 (Academic article)
High Levels of Genomic Aberrations in Serous Ovarian Cancers Are Associated with Better Survival. Baumbusch, Lars Oliver; Helland, Åslaug; Wang, Yun; Liestøl, Knut; Schaner, M.E.; Holm, Ruth; Etemadmoghadam, D; Alsop, Kathryn; Brown, Pat; Mitchell, Gillian et al.. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0054356 (Academic article)
Identification of Highly Methylated Genes across Various Types of B-Cell Non-Hodgkin Lymphoma. Bethge, Nicole; Honne, Hilde; Hilden, Vera Irene; Trøen, Gunhild; Eknæs, Mette; Liestøl, Knut; Holte, Harald; Delabie, Jan; Smeland, Erlend B & Lind, Guro Elisabeth. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0079602 (Academic article)
Identification of Highly Methylated Genes across Various Types of B-Cell Non-Hodgkin Lymphoma. Bethge, Nicole; Honne, Hilde; Hilden, Vera Irene; Trøen, Gunhild; Eknæs, Mette; Liestøl, Knut; Holte, Harald; Delabie, Jan; Smeland, Erlend B & Lind, Guro Elisabeth. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0079602 (Academic article)
Identifying clusters in genomics data by recursive partitioning. Nilsen, Gro; Borgan, Ørnulf; Liestøl, Knut & Lingjærde, Ole Christian. 2013, Statistical Applications in Genetics and Molecular Biology.
https://doi.org/10.1515/sagmb-2013-0016 (Academic article)
Identifying clusters in genomics data by recursive partitioning. Nilsen, Gro; Borgan, Ørnulf; Liestøl, Knut & Lingjærde, Ole Christian. 2013, Statistical Applications in Genetics and Molecular Biology.
https://doi.org/10.1515/sagmb-2013-0016 (Academic article)
Identifying In-Trans Process Associated Genes in Breast Cancer by Integrated Analysis of Copy Number and Expression Data. Aure, Miriam Ragle; Steinfeld, I; Baumbusch, Lars Oliver; Liestøl, Knut; Lipson, Doron; Nyberg, Sandra Johanna; Naume, Bjørn; Sahlberg, Kristine Kleivi; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0053014 (Academic article)
Identifying In-Trans Process Associated Genes in Breast Cancer by Integrated Analysis of Copy Number and Expression Data. Aure, Miriam Ragle; Steinfeld, I; Baumbusch, Lars Oliver; Liestøl, Knut; Lipson, Doron; Nyberg, Sandra Johanna; Naume, Bjørn; Sahlberg, Kristine Kleivi; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2013, PLOS ONE.
https://doi.org/10.1371/journal.pone.0053014 (Academic article)
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors. Aure, Miriam Ragle; Leivonen, Suvi-Katri; Fleischer, Thomas; Zhu, Qian; Overgaard, Jens; Alsner, Jan; Tramm, Trine; Louhimo, Riku; Grenaker, Grethe Irene; Åerälä, Merja et al.. 2013, Genome Biology.
https://doi.org/10.1186/gb-2013-14-11-r126 (Academic article)
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors. Aure, Miriam Ragle; Leivonen, Suvi-Katri; Fleischer, Thomas; Zhu, Qian; Overgaard, Jens; Alsner, Jan; Tramm, Trine; Louhimo, Riku; Grenaker, Grethe Irene; Åerälä, Merja et al.. 2013, Genome Biology.
https://doi.org/10.1186/gb-2013-14-11-r126 (Academic article)
Influence of DNA copy number and mRNA levels on the expression of breast cancer related proteins. Myhre, Simen; Lingjærde, Ole Christian; Hennessy, Bryan T; Aure, Miriam Ragle; Carey, Mark S; Alsner, Jan; Tramm, Trine; Ouergaard, Jens; Mills, Gordon B.; Børresen-Dale, Anne-Lise et al.. 2013, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2013.02.018 (Academic article)
Influence of DNA copy number and mRNA levels on the expression of breast cancer related proteins. Myhre, Simen; Lingjærde, Ole Christian; Hennessy, Bryan T; Aure, Miriam Ragle; Carey, Mark S; Alsner, Jan; Tramm, Trine; Ouergaard, Jens; Mills, Gordon B.; Børresen-Dale, Anne-Lise et al.. 2013, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2013.02.018 (Academic article)
Influence of polymorphisms in genes encoding immunoregulatory proteins and metabolizing enzymes on susceptibility and outcome in patients with diffuse large B-cell lymphoma treated with rituximab. Yri, Olav Erich; Ekstrøm, Per Olaf; Hilden, Vera Irene; Gaudernack, Gustav; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2013, Leukemia and Lymphoma.
https://doi.org/10.3109/10428194.2013.774392 (Academic article)
Influence of polymorphisms in genes encoding immunoregulatory proteins and metabolizing enzymes on susceptibility and outcome in patients with diffuse large B-cell lymphoma treated with rituximab. Yri, Olav Erich; Ekstrøm, Per Olaf; Hilden, Vera Irene; Gaudernack, Gustav; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2013, Leukemia and Lymphoma.
https://doi.org/10.3109/10428194.2013.774392 (Academic article)
Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression. Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Handunnetthi, Lahiru; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2013, BMC Medical Genomics.
https://doi.org/10.1186/1755-8794-6-45 (Academic article)
Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression. Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Handunnetthi, Lahiru; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2013, BMC Medical Genomics.
https://doi.org/10.1186/1755-8794-6-45 (Academic article)
Light-Controlled Modulation of Gene Expression Using Polyamidoamine Formulations. Bøe, Sigurd; Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Lavelle, Timothy J; Sæbøe-Larssen, Stein & Hovig, Johannes Eivind. 2013, Nucleic Acid Therapeutics.
https://doi.org/10.1089/nat.2012.0413 (Academic article)
Light-Controlled Modulation of Gene Expression Using Polyamidoamine Formulations. Bøe, Sigurd; Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Lavelle, Timothy J; Sæbøe-Larssen, Stein & Hovig, Johannes Eivind. 2013, Nucleic Acid Therapeutics.
https://doi.org/10.1089/nat.2012.0413 (Academic article)
Light-induced mRNA transfection. Bøe, Sigurd & Hovig, Eivind. 2013, Methods in molecular biology.
https://doi.org/10.1007/978-1-62703-260-5_6 (Academic article)
Light-induced mRNA transfection. Bøe, Sigurd & Hovig, Eivind. 2013, Methods in molecular biology.
https://doi.org/10.1007/978-1-62703-260-5_6 (Academic article)
Longitudinal assessment of atrioventricular annulus excursion by grey-scale m-mode and colour tissue Doppler imaging in premature infants. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2013, Early Human Development.
https://doi.org/10.1016/j.earlhumdev.2013.09.006 (Academic article)
Longitudinal assessment of atrioventricular annulus excursion by grey-scale m-mode and colour tissue Doppler imaging in premature infants. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2013, Early Human Development.
https://doi.org/10.1016/j.earlhumdev.2013.09.006 (Academic article)
Low Heart Rates Predict Incident Atrial Fibrillation in Healthy Middle-Aged Men. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Engeseth, Kristian; Gjesdal, Knut; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2013, Circulation: Arrhythmia and Electrophysiology.
https://doi.org/10.1161/CIRCEP.113.000267 (Academic article)
Low Heart Rates Predict Incident Atrial Fibrillation in Healthy Middle-Aged Men. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Engeseth, Kristian; Gjesdal, Knut; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2013, Circulation: Arrhythmia and Electrophysiology.
https://doi.org/10.1161/CIRCEP.113.000267 (Academic article)
Membrane remodeling by the PX-BAR protein SNX18 promotes autophagosome formation. Knævelsrud, Helene; Søreng, Kristiane; Raiborg, Camilla; Håberg, Karin; Rasmuson, Fredrik; Brech, Andreas; Liestøl, Knut; Rusten, Tor Erik; Stenmark, Harald Alfred; Neufeld, TP et al.. 2013, Journal of Cell Biology.
https://doi.org/10.1083/jcb.201205129 (Academic article)
Membrane remodeling by the PX-BAR protein SNX18 promotes autophagosome formation. Knævelsrud, Helene; Søreng, Kristiane; Raiborg, Camilla; Håberg, Karin; Rasmuson, Fredrik; Brech, Andreas; Liestøl, Knut; Rusten, Tor Erik; Stenmark, Harald Alfred; Neufeld, TP et al.. 2013, Journal of Cell Biology.
https://doi.org/10.1083/jcb.201205129 (Academic article)
Muscle activity and head kinematics in unconstrained movements in subjects with chronic neck pain; cervical motor dysfunction or low exertion motor output?. Vikne, Harald; Bakke, Eva; Liestøl, Knut; Engen, Stian Rugsveen & Vøllestad, Nina Køpke. 2013, BMC Musculoskeletal Disorders.
https://doi.org/10.1186/1471-2474-14-314 (Academic article)
Muscle activity and head kinematics in unconstrained movements in subjects with chronic neck pain; cervical motor dysfunction or low exertion motor output?. Vikne, Harald; Bakke, Eva; Liestøl, Knut; Engen, Stian Rugsveen & Vøllestad, Nina Køpke. 2013, BMC Musculoskeletal Disorders.
https://doi.org/10.1186/1471-2474-14-314 (Academic article)
Myocardial function in premature infants: a longitudinal observational study. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2013, BMJ Open.
https://doi.org/10.1136/bmjopen-2012-002441 (Academic article)
Myocardial function in premature infants: a longitudinal observational study. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2013, BMJ Open.
https://doi.org/10.1136/bmjopen-2012-002441 (Academic article)
Pathway analysis of genetic markers associated with a functional MRI faces paradigm implicates polymorphisms in calcium responsive pathways. Mattingsdal, Morten; Brown, Andrew; Djurovic, Srdjan; Sønderby, Ida Elken; ALONSO, ANDRES SERVER; Melle, Ingrid; Agartz, Ingrid; Hovig, Johannes Eivind; Jensen, Jimmy Kristian & Andreassen, Ole Andreas. 2013, NeuroImage.
https://doi.org/10.1016/j.neuroimage.2012.12.035 (Academic article)
Pathway analysis of genetic markers associated with a functional MRI faces paradigm implicates polymorphisms in calcium responsive pathways. Mattingsdal, Morten; Brown, Andrew; Djurovic, Srdjan; Sønderby, Ida Elken; ALONSO, ANDRES SERVER; Melle, Ingrid; Agartz, Ingrid; Hovig, Johannes Eivind; Jensen, Jimmy Kristian & Andreassen, Ole Andreas. 2013, NeuroImage.
https://doi.org/10.1016/j.neuroimage.2012.12.035 (Academic article)
Predicting Physical Interactions between Protein Complexes. Clancy, Trevor; Rødland, Einar Andreas; Nygård, Ståle & Hovig, Johannes Eivind. 2013, Molecular & Cellular Proteomics.
https://doi.org/10.1074/mcp.O112.019828 (Academic article)
Predicting Physical Interactions between Protein Complexes. Clancy, Trevor; Rødland, Einar Andreas; Nygård, Ståle & Hovig, Johannes Eivind. 2013, Molecular & Cellular Proteomics.
https://doi.org/10.1074/mcp.O112.019828 (Academic article)
Predictors of atrial fibrillation differ in men with high vs low physical fitness. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Engeseth, Kristian; Gjesdal, Knut; Kjeldsen, Sverre Erik; Arnesen, Harald; Erkssen, J. & Bodegard, Johan. 2013, European Heart Journal.
(Abstract)
Predictors of atrial fibrillation differ in men with high vs low physical fitness. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Engeseth, Kristian; Gjesdal, Knut; Kjeldsen, Sverre Erik; Arnesen, Harald; Erkssen, J. & Bodegard, Johan. 2013, European Heart Journal.
(Abstract)
Production of phosphatidylinositol 5-phosphate via PIKfyve and MTMR3 regulates cell migration. Oppelt, Angela; Lobert, Viola Helene; Haglund, Kaisa; Mackey, Ashley M.; Rameh, Lucia E.; Liestøl, Knut; Schink, Kay Oliver; Pedersen, Nina Marie; Wenzel, Eva; Haugsten, Ellen Margrethe et al.. 2013, EMBO Reports.
https://doi.org/10.1038/embor.2012.183 (Academic article)
Production of phosphatidylinositol 5-phosphate via PIKfyve and MTMR3 regulates cell migration. Oppelt, Angela; Lobert, Viola Helene; Haglund, Kaisa; Mackey, Ashley M.; Rameh, Lucia E.; Liestøl, Knut; Schink, Kay Oliver; Pedersen, Nina Marie; Wenzel, Eva; Haugsten, Ellen Margrethe et al.. 2013, EMBO Reports.
https://doi.org/10.1038/embor.2012.183 (Academic article)
Rapidly upsloping ST-segment on exercise ECG: a marker of reduced coronary heart disease mortality risk. Hodnesdal, Christian; Prestgaard, Erik Edvard; Erikssen, Gunnar; Gjesdal, Knut; Kjeldsen, Sverre Erik; Liestøl, Knut; Skretteberg, Torger; Erikssen, Jan Emil & Bodegard, Johan. 2013, European Journal of Preventive Cardiology (EJPC).
https://doi.org/10.1177/2047487312444370 (Academic article)
Rapidly upsloping ST-segment on exercise ECG: a marker of reduced coronary heart disease mortality risk. Hodnesdal, Christian; Prestgaard, Erik Edvard; Erikssen, Gunnar; Gjesdal, Knut; Kjeldsen, Sverre Erik; Liestøl, Knut; Skretteberg, Torger; Erikssen, Jan Emil & Bodegard, Johan. 2013, European Journal of Preventive Cardiology (EJPC).
https://doi.org/10.1177/2047487312444370 (Academic article)
Seven-Year Increase in Exercise Systolic Blood Pressure at Moderate Workload Predicts Long-Term Risk of Coronary Heart Disease and Mortality in Healthy Middle-Aged Men. Skretteberg, Per Torger; Grundvold, Irene; Kjeldsen, Sverre Erik; Engeseth, Kristian; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Gjesdal, Knut & Bodegard, Johan. 2013, Hypertension.
https://doi.org/10.1161/HYPERTENSIONAHA.111.00793 (Academic article)
Seven-Year Increase in Exercise Systolic Blood Pressure at Moderate Workload Predicts Long-Term Risk of Coronary Heart Disease and Mortality in Healthy Middle-Aged Men. Skretteberg, Per Torger; Grundvold, Irene; Kjeldsen, Sverre Erik; Engeseth, Kristian; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Gjesdal, Knut & Bodegard, Johan. 2013, Hypertension.
https://doi.org/10.1161/HYPERTENSIONAHA.111.00793 (Academic article)
Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities. Weel-Sneve, Ragnhild; Kristiansen, Knut Ivan; Odsbu, Ingvild; Dalhus, Bjørn; Booth, James; Rognes, Torbjørn; Skarstad, Kirsten & Bjørås, Magnar. 2013, PLoS Genetics.
https://doi.org/10.1371/journal.pgen.1003260 (Academic article)
Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities. Weel-Sneve, Ragnhild; Kristiansen, Knut Ivan; Odsbu, Ingvild; Dalhus, Bjørn; Booth, James; Rognes, Torbjørn; Skarstad, Kirsten & Bjørås, Magnar. 2013, PLoS Genetics.
https://doi.org/10.1371/journal.pgen.1003260 (Academic article)
Substantial loss of conserved and gain of novel microRNA families in flatworms. Fromm, Bastian; Worren, Merete Molton; Hahn, Christoph; Hovig, Johannes Eivind & Bachmann, Lutz. 2013, Molecular Biology and Evolution (MBE).
https://doi.org/10.1093/molbev/mst155 (Academic article)
Substantial loss of conserved and gain of novel microRNA families in flatworms. Fromm, Bastian; Worren, Merete Molton; Hahn, Christoph; Hovig, Johannes Eivind & Bachmann, Lutz. 2013, Molecular Biology and Evolution (MBE).
https://doi.org/10.1093/molbev/mst155 (Academic article)
Subtype-specific response to bevacizumab is reflected in the metabolome and transcriptome of breast cancer xenografts. Borgan, Eldrid; Lindholm, Evita Maria; Moestue, Siver Andreas; Mælandsmo, Gunhild; Lingjærde, Ole Christian; Gribbestad, Ingrid S; Børresen-Dale, Anne-Lise ; Engebråten, Olav & Sørlie, Therese. 2013, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2012.10.005 (Academic article)
Subtype-specific response to bevacizumab is reflected in the metabolome and transcriptome of breast cancer xenografts. Borgan, Eldrid; Lindholm, Evita Maria; Moestue, Siver Andreas; Mælandsmo, Gunhild; Lingjærde, Ole Christian; Gribbestad, Ingrid S; Børresen-Dale, Anne-Lise ; Engebråten, Olav & Sørlie, Therese. 2013, Molecular Oncology.
https://doi.org/10.1016/j.molonc.2012.10.005 (Academic article)
Survival meta-analyses for > 1800 malignant peripheral nerve sheath tumor patients with and without neurofibromatosis type 1. Kolberg, Matthias; Høland, Maren; Ågesen, Trude Holmeide; Brekke, Helge Roar; Liestøl, Knut; Hall, Kirsten Sundby; Mertens, Fredrik; Picci, Piero; Smeland, Sigbjørn & Lothe, Ragnhild A. 2013, Neuro-Oncology.
https://doi.org/10.1093/neuonc/nos287 (Academic literature review)
Survival meta-analyses for > 1800 malignant peripheral nerve sheath tumor patients with and without neurofibromatosis type 1. Kolberg, Matthias; Høland, Maren; Ågesen, Trude Holmeide; Brekke, Helge Roar; Liestøl, Knut; Hall, Kirsten Sundby; Mertens, Fredrik; Picci, Piero; Smeland, Sigbjørn & Lothe, Ragnhild A. 2013, Neuro-Oncology.
https://doi.org/10.1093/neuonc/nos287 (Academic literature review)
Ten Simple Rules for Reproducible Computational Research. Sandve, Geir Kjetil; Nekrutenko, Anton; Taylor, James & Hovig, Johannes Eivind. 2013, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1003285 (Editoral)
Ten Simple Rules for Reproducible Computational Research. Sandve, Geir Kjetil; Nekrutenko, Anton; Taylor, James & Hovig, Johannes Eivind. 2013, PLoS Computational Biology.
https://doi.org/10.1371/journal.pcbi.1003285 (Editoral)
The Genomic HyperBrowser: an analysis web server for genome-scale data. Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard et al.. 2013, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkt342 (Academic article)
The Genomic HyperBrowser: an analysis web server for genome-scale data. Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard et al.. 2013, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gkt342 (Academic article)
The smoothness of unconstrained head movements is velocity-dependent. Vikne, Harald; Bakke, Eva; Liestøl, Knut; Sandbæk, Gunnar & Vøllestad, Nina Køpke. 2013, Human Movement Science.
https://doi.org/10.1016/j.humov.2012.12.013 (Academic article)
The smoothness of unconstrained head movements is velocity-dependent. Vikne, Harald; Bakke, Eva; Liestøl, Knut; Sandbæk, Gunnar & Vøllestad, Nina Køpke. 2013, Human Movement Science.
https://doi.org/10.1016/j.humov.2012.12.013 (Academic article)
Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response. Booth, James A.; Thomassen, Gard O Sundby; Rowe, Alexander D.; Weel-Sneve, Ragnhild; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar; Rognes, Torbjørn & Lindvall, Jessica Margareta. 2013, Scientific Reports.
https://doi.org/10.1038/srep03053 (Academic article)
Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response. Booth, James A.; Thomassen, Gard O Sundby; Rowe, Alexander D.; Weel-Sneve, Ragnhild; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar; Rognes, Torbjørn & Lindvall, Jessica Margareta. 2013, Scientific Reports.
https://doi.org/10.1038/srep03053 (Academic article)
Triglycerides-diabetes association in healthy middle-aged men: Modified by physical fitness? A long term follow-up of 1962 Norwegian men in the Oslo Ischemia Study. Skretteberg, Torger; Nordeide, Grytten Anette; Gjertsen, Kathrine; Grundvold, Irene; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Mellbin, Linda; Liestøl, Knut; Fraser, David A.; Erikssen, Gunnar et al.. 2013, Diabetes Research and Clinical Practice.
https://doi.org/10.1016/j.diabres.2013.06.001 (Academic article)
Triglycerides-diabetes association in healthy middle-aged men: Modified by physical fitness? A long term follow-up of 1962 Norwegian men in the Oslo Ischemia Study. Skretteberg, Torger; Nordeide, Grytten Anette; Gjertsen, Kathrine; Grundvold, Irene; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Mellbin, Linda; Liestøl, Knut; Fraser, David A.; Erikssen, Gunnar et al.. 2013, Diabetes Research and Clinical Practice.
https://doi.org/10.1016/j.diabres.2013.06.001 (Academic article)
Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Berlanga-Taylor, Antonio; Gallone, Anna; Hanwell, Heather EC; Drabløs, Finn; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V. 2013, BMC Medicine.
https://doi.org/10.1186/1741-7015-11-163 (Academic article)
Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Berlanga-Taylor, Antonio; Gallone, Anna; Hanwell, Heather EC; Drabløs, Finn; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V. 2013, BMC Medicine.
https://doi.org/10.1186/1741-7015-11-163 (Academic article)
2012
7-year reduction of exercise max heart rate predicts new onset diabetes. Engeseth, Kristian; Skretteberg, Per Torger; Grundvold, Irene; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Kjeldsen, Sverre Erik & Bodegard, Johan. 2012, European Heart Journal.
(Abstract)
7-year reduction of exercise max heart rate predicts new onset diabetes. Engeseth, Kristian; Skretteberg, Per Torger; Grundvold, Irene; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Kjeldsen, Sverre Erik & Bodegard, Johan. 2012, European Heart Journal.
(Abstract)
A primer on the current state of microarray technologies. Trachtenberg, AJ; Robert, JH; Abdalla, AE; Fraser, A; He, SY; Lacy, JN; Rivas-Morello, C; Truong, A; Hardiman, G; Ohno-Machado, Lucila et al.. 2012, Methods in molecular biology.
(Academic literature review)
A primer on the current state of microarray technologies. Trachtenberg, AJ; Robert, JH; Abdalla, AE; Fraser, A; He, SY; Lacy, JN; Rivas-Morello, C; Truong, A; Hardiman, G; Ohno-Machado, Lucila et al.. 2012, Methods in molecular biology.
(Academic literature review)
Age-Associated Hyper-Methylated Regions in the Human Brain Overlap with Bivalent Chromatin Domains. Watson, Corey T; Disanto, Giulio; Sandve, Geir Kjetil; Breden, Felix; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0043840 (Academic article)
Age-Associated Hyper-Methylated Regions in the Human Brain Overlap with Bivalent Chromatin Domains. Watson, Corey T; Disanto, Giulio; Sandve, Geir Kjetil; Breden, Felix; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0043840 (Academic article)
Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nordstrand, Line Mari; Furu, Kari; Paulsen, Jonas; Rognes, Torbjørn & Klungland, Arne. 2012, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gks839 (Academic article)
Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nordstrand, Line Mari; Furu, Kari; Paulsen, Jonas; Rognes, Torbjørn & Klungland, Arne. 2012, Nucleic Acids Research (NAR).
https://doi.org/10.1093/nar/gks839 (Academic article)
ALKBH1 Is a Histone H2A Dioxygenase Involved in Neural Differentiation. Ougland, Rune; Lando, David; Jonson, Ida; Dahl, John Arne; Moen, Marivi; Nordstrand, Line Mari; Rognes, Torbjørn; Lee, Jeannie T; Klungland, Arne; Kouzarides, Tony et al.. 2012, Stem Cells.
https://doi.org/10.1002/stem.1228 (Academic article)
ALKBH1 Is a Histone H2A Dioxygenase Involved in Neural Differentiation. Ougland, Rune; Lando, David; Jonson, Ida; Dahl, John Arne; Moen, Marivi; Nordstrand, Line Mari; Rognes, Torbjørn; Lee, Jeannie T; Klungland, Arne; Kouzarides, Tony et al.. 2012, Stem Cells.
https://doi.org/10.1002/stem.1228 (Academic article)
Analyzing cancer samples with SNP arrays. van Loo, Peter; Nilsen, Gro; Nordgard, Silje H.; Vollan, Hans Kristian Moen; Børresen-Dale, Anne-Lise ; Kristensen, Vessela N. & Lingjærde, Ole Christian. 2012, Humana Press.
https://doi.org/10.1007/978-1-61779-400-1_4 (Academic chapter/article/Conference paper)
Analyzing cancer samples with SNP arrays. van Loo, Peter; Nilsen, Gro; Nordgard, Silje H.; Vollan, Hans Kristian Moen; Børresen-Dale, Anne-Lise ; Kristensen, Vessela N. & Lingjærde, Ole Christian. 2012, Humana Press.
https://doi.org/10.1007/978-1-61779-400-1_4 (Academic chapter/article/Conference paper)
CellLineMiner: a knowledge portal for human cell lines. Nakken, Sigve; Johansen, Morten; Fillebeen, Julien; Berge, Ole Petter; Kirkerød, Harald; Jenssen, Tor-Kristian & Hovig, Eivind. 2012, Bioinformation.
https://doi.org/10.6026/97320630081119 (Academic article)
CellLineMiner: a knowledge portal for human cell lines. Nakken, Sigve; Johansen, Morten; Fillebeen, Julien; Berge, Ole Petter; Kirkerød, Harald; Jenssen, Tor-Kristian & Hovig, Eivind. 2012, Bioinformation.
https://doi.org/10.6026/97320630081119 (Academic article)
ColoGuidePro: A Prognostic 7-Gene Expression Signature for Stage III Colorectal Cancer Patients. Sveen, Anita; Ågesen, Trude Holmeide; Nesbakken, Arild; Meling, Gunn Iren; Rognum, Torleiv Ole; Liestøl, Knut; Skotheim, Rolf Inge & Lothe, Ragnhild A. 2012, Clinical Cancer Research.
https://doi.org/10.1158/1078-0432.CCR-11-3302 (Academic article)
ColoGuidePro: A Prognostic 7-Gene Expression Signature for Stage III Colorectal Cancer Patients. Sveen, Anita; Ågesen, Trude Holmeide; Nesbakken, Arild; Meling, Gunn Iren; Rognum, Torleiv Ole; Liestøl, Knut; Skotheim, Rolf Inge & Lothe, Ragnhild A. 2012, Clinical Cancer Research.
https://doi.org/10.1158/1078-0432.CCR-11-3302 (Academic article)
Copynumber: Efficient algorithms for single and multi-track copy number segmentation. Nilsen, Gro; Liestøl, Knut; Van Loo, P; Vollan, Hans Kristian Moen; Eide, Marianne Brodtkorb; Rueda, Oscar M.; Chin, Suet-Feung; Russel, Roslin; Baumbusch, Lars Oliver; Caldas, Carlos et al.. 2012, BMC Genomics.
https://doi.org/10.1186/1471-2164-13-591 (Academic article)
Copynumber: Efficient algorithms for single and multi-track copy number segmentation. Nilsen, Gro; Liestøl, Knut; Van Loo, P; Vollan, Hans Kristian Moen; Eide, Marianne Brodtkorb; Rueda, Oscar M.; Chin, Suet-Feung; Russel, Roslin; Baumbusch, Lars Oliver; Caldas, Carlos et al.. 2012, BMC Genomics.
https://doi.org/10.1186/1471-2164-13-591 (Academic article)
Genomic Regions Associated with Multiple Sclerosis Are Active in B Cells. Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Morahan, Julia; Dobson, Ruth; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0032281 (Academic article)
Genomic Regions Associated with Multiple Sclerosis Are Active in B Cells. Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Morahan, Julia; Dobson, Ruth; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0032281 (Academic article)
Genomsekvensering for persontilpasset kreftbehandling. Skotheim, Rolf Inge; Meza-Zepeda, Leonardo Andrés; Hovig, Eivind; Lønning, Per Eystein; Lothe, Ragnhild A & Myklebost, Ola. 2012, Tidsskrift for Den norske legeforening.
https://doi.org/10.4045/tidsskr.12.0784 (Feature article)
Genomsekvensering for persontilpasset kreftbehandling. Skotheim, Rolf Inge; Meza-Zepeda, Leonardo Andrés; Hovig, Eivind; Lønning, Per Eystein; Lothe, Ragnhild A & Myklebost, Ola. 2012, Tidsskrift for Den norske legeforening.
https://doi.org/10.4045/tidsskr.12.0784 (Feature article)
High-resolution analyses of copy number changes in disseminated tumor cells of patients with breast cancer. Ruud Mathiesen, Randi Margit; Fjelldal, Renathe; Liestøl, Knut; Due, Eldri Undlien; Geigl, Jochen; Riethdorf, Sabine; Borgen, Elin; Rye, Inga Hansine; Schneider, Ida Johansson; Obenauf, Anna et al.. 2012, International Journal of Cancer.
https://doi.org/10.1002/ijc.26444 (Academic article)
High-resolution analyses of copy number changes in disseminated tumor cells of patients with breast cancer. Ruud Mathiesen, Randi Margit; Fjelldal, Renathe; Liestøl, Knut; Due, Eldri Undlien; Geigl, Jochen; Riethdorf, Sabine; Borgen, Elin; Rye, Inga Hansine; Schneider, Ida Johansson; Obenauf, Anna et al.. 2012, International Journal of Cancer.
https://doi.org/10.1002/ijc.26444 (Academic article)
Identification and Characterization of Novel Mutations in the Human Gene Encoding the Catalytic Subunit Calpha of Protein Kinase A (PKA). Søberg, Kristoffer; Larsen, Anja C V; Diskar, Mandy; Backe, Paul Hoff; Bjørås, Magnar; Jahnsen, Tore; Lærdahl, Jon Kristen; Rognes, Torbjørn; Herberg, Friedrich W. & Skålhegg, Bjørn Steen. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0034838 (Academic article)
Identification and Characterization of Novel Mutations in the Human Gene Encoding the Catalytic Subunit Calpha of Protein Kinase A (PKA). Søberg, Kristoffer; Larsen, Anja C V; Diskar, Mandy; Backe, Paul Hoff; Bjørås, Magnar; Jahnsen, Tore; Lærdahl, Jon Kristen; Rognes, Torbjørn; Herberg, Friedrich W. & Skålhegg, Bjørn Steen. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0034838 (Academic article)
Importance of physical fitness on the predictive effect of body mass index and weight gain on incident atrial fibrillation in healthy middle-aged men. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Gjesdal, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2012, American Journal of Cardiology.
https://doi.org/10.1016/j.amjcard.2012.03.043 (Academic article)
Importance of physical fitness on the predictive effect of body mass index and weight gain on incident atrial fibrillation in healthy middle-aged men. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Gjesdal, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2012, American Journal of Cardiology.
https://doi.org/10.1016/j.amjcard.2012.03.043 (Academic article)
Increased expression of IRF4 and ETS1 in CD4(+) cells from patients with intermittent allergic rhinitis. Bruhn, Sören; Barrenäs, Fredrik; Mobini, R; Andersson, B; Chavali, S.; Egan, B. S.; Hovig, Eivind; Sandve, Geir Kjetil; Langston, M. A.; Rogers, Gary et al.. 2012, Allergy. European Journal of Allergy and Clinical Immunology.
https://doi.org/10.1111/j.1398-9995.2011.02707.x (Academic article)
Increased expression of IRF4 and ETS1 in CD4(+) cells from patients with intermittent allergic rhinitis. Bruhn, Sören; Barrenäs, Fredrik; Mobini, R; Andersson, B; Chavali, S.; Egan, B. S.; Hovig, Eivind; Sandve, Geir Kjetil; Langston, M. A.; Rogers, Gary et al.. 2012, Allergy. European Journal of Allergy and Clinical Immunology.
https://doi.org/10.1111/j.1398-9995.2011.02707.x (Academic article)
Integrative Analysis Reveals Relationships of Genetic and Epigenetic Alterations in Osteosarcoma. Kresse, Stine Henrichson; Rydbeck, Halfdan; Skårn, Magne; Namløs, Heidi Maria; Barragan Polania, Ana H.; Cleton-Jansen, Anne-Marie; Serra, Massimo; Liestøl, Knut; Hogendoorn, Pancras C. W.; Hovig, Eivind et al.. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0048262 (Academic article)
Integrative Analysis Reveals Relationships of Genetic and Epigenetic Alterations in Osteosarcoma. Kresse, Stine Henrichson; Rydbeck, Halfdan; Skårn, Magne; Namløs, Heidi Maria; Barragan Polania, Ana H.; Cleton-Jansen, Anne-Marie; Serra, Massimo; Liestøl, Knut; Hogendoorn, Pancras C. W.; Hovig, Eivind et al.. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0048262 (Academic article)
Intermuscular relationship of human muscle fiber type proportions: Slow leg muscles predict slow neck muscles. Vikne, Harald; Gundersen, Kristian; Liestøl, Knut; Mæhlen, Jan & Vøllestad, Nina Køpke. 2012, Muscle and Nerve.
https://doi.org/10.1002/mus.22315 (Academic article)
Intermuscular relationship of human muscle fiber type proportions: Slow leg muscles predict slow neck muscles. Vikne, Harald; Gundersen, Kristian; Liestøl, Knut; Mæhlen, Jan & Vøllestad, Nina Køpke. 2012, Muscle and Nerve.
https://doi.org/10.1002/mus.22315 (Academic article)
Low-grade systolic murmurs in healthy middle-aged individuals: innocent or clinically significant? A 35-year follow-up study of 2014 Norwegian men. Bodegard, Johan; Skretteberg, Torger; Gjesdal, Knut; Pyöräla, Kalevi; Kjeldsen, Sverre Erik; Liestøl, Knut; Erikssen, Gunnar & Erikssen, Jan Emil. 2012, Journal of Internal Medicine.
https://doi.org/10.1111/j.1365-2796.2011.02480.x (Academic article)
Low-grade systolic murmurs in healthy middle-aged individuals: innocent or clinically significant? A 35-year follow-up study of 2014 Norwegian men. Bodegard, Johan; Skretteberg, Torger; Gjesdal, Knut; Pyöräla, Kalevi; Kjeldsen, Sverre Erik; Liestøl, Knut; Erikssen, Gunnar & Erikssen, Jan Emil. 2012, Journal of Internal Medicine.
https://doi.org/10.1111/j.1365-2796.2011.02480.x (Academic article)
Performance comparison of multiple microarray platforms for gene expression profiling. Liu, Fang; Kuo, Patrick Winston; Jenssen, Tor-Kristian & Hovig, Eivind. 2012, Methods in molecular biology.
https://doi.org/10.1007/978-1-61779-400-1_10 (Academic article)
Performance comparison of multiple microarray platforms for gene expression profiling. Liu, Fang; Kuo, Patrick Winston; Jenssen, Tor-Kristian & Hovig, Eivind. 2012, Methods in molecular biology.
https://doi.org/10.1007/978-1-61779-400-1_10 (Academic article)
Polymorphisms in genes encoding interleukin-10 and drug metabolizing enzymes GSTP1, GSTT1, GSTA1 and UGT1A1 influence risk and outcome in Hodgkin lymphoma. Yri, Olav Erich; Ekstrøm, Per Olaf; Hilden, Vera Irene; Gaudernack, Gustav; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2012, Leukemia and Lymphoma.
https://doi.org/10.3109/10428194.2012.682307 (Academic article)
Polymorphisms in genes encoding interleukin-10 and drug metabolizing enzymes GSTP1, GSTT1, GSTA1 and UGT1A1 influence risk and outcome in Hodgkin lymphoma. Yri, Olav Erich; Ekstrøm, Per Olaf; Hilden, Vera Irene; Gaudernack, Gustav; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2012, Leukemia and Lymphoma.
https://doi.org/10.3109/10428194.2012.682307 (Academic article)
Potent Gene Silencing In Vitro at Physiological pH Using Chitosan Polymers. Jørgensen, Jens Andreas Lindin; Hovig, Eivind & Bøe, Sigurd. 2012, Nucleic Acid Therapeutics.
https://doi.org/10.1089/nat.2011.0335 (Academic article)
Potent Gene Silencing In Vitro at Physiological pH Using Chitosan Polymers. Jørgensen, Jens Andreas Lindin; Hovig, Eivind & Bøe, Sigurd. 2012, Nucleic Acid Therapeutics.
https://doi.org/10.1089/nat.2011.0335 (Academic article)
Proffered Paper: Dissecting the Genetic Components of Breast Cancer Transcriptomes. Nord, S; Lingjærde, Ole Christian; Nebdal, D; Sun, W.; Alnaes, GIG; Van Loo, P; Naume, Bjørn; Børresen-Dale, Anne-Lise & Kristensen, Vessela N.. 2012, European Journal of Cancer.
(Abstract)
Proffered Paper: Dissecting the Genetic Components of Breast Cancer Transcriptomes. Nord, S; Lingjærde, Ole Christian; Nebdal, D; Sun, W.; Alnaes, GIG; Van Loo, P; Naume, Bjørn; Børresen-Dale, Anne-Lise & Kristensen, Vessela N.. 2012, European Journal of Cancer.
(Abstract)
Role of Smad Proteins in Resistance to BMP-Induced Growth Inhibition in B-Cell Lymphoma. Huse, Kanutte; Bakkebø, Maren; Waelchli, Sebastien; Oksvold, Morten Pedersen; Hilden, Vera Irene; Forfang, Lise; Bredahl, May K. Lyamouri; Liestøl, Knut; Alizadeh, Ash A.; Smeland, Erlend B et al.. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0046117 (Academic article)
Role of Smad Proteins in Resistance to BMP-Induced Growth Inhibition in B-Cell Lymphoma. Huse, Kanutte; Bakkebø, Maren; Waelchli, Sebastien; Oksvold, Morten Pedersen; Hilden, Vera Irene; Forfang, Lise; Bredahl, May K. Lyamouri; Liestøl, Knut; Alizadeh, Ash A.; Smeland, Erlend B et al.. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0046117 (Academic article)
Sequential ADP-stimulated light transmission and multiple electrode aggregometry in patients taking aspirin and clopidogrel after non ST-elevation myocardial infarction. Meen, Øystein; Brosstad, Frank Roger; Liestøl, Knut; Kunszt, Gabor; Bendz, Bjørn; Wettergreen, Marianne; Schjelderup, NM; Andreassen, Trine & Erikssen, Gunnar. 2012, Scandinavian Journal of Clinical and Laboratory Investigation.
https://doi.org/10.3109/00365513.2012.666565 (Academic article)
Sequential ADP-stimulated light transmission and multiple electrode aggregometry in patients taking aspirin and clopidogrel after non ST-elevation myocardial infarction. Meen, Øystein; Brosstad, Frank Roger; Liestøl, Knut; Kunszt, Gabor; Bendz, Bjørn; Wettergreen, Marianne; Schjelderup, NM; Andreassen, Trine & Erikssen, Gunnar. 2012, Scandinavian Journal of Clinical and Laboratory Investigation.
https://doi.org/10.3109/00365513.2012.666565 (Academic article)
Seven-year increase in exercise systolic blood pressure at 100w predicts long-term risk of coronary heart disease in healthy middle-aged men. Skretteberg, Per Torger; Grundvold, Irene; Kjeldsen, Sverre Erik; Gjesdal, Knut; Liestøl, Knut; Erikssen, Jan Emil; Erikssen, Gunnar & Bodegard, Johan. 2012, Journal of the American College of Cardiology.
https://doi.org/10.1016/S0735-1097(12)61628-3 (Abstract)
Seven-year increase in exercise systolic blood pressure at 100w predicts long-term risk of coronary heart disease in healthy middle-aged men. Skretteberg, Per Torger; Grundvold, Irene; Kjeldsen, Sverre Erik; Gjesdal, Knut; Liestøl, Knut; Erikssen, Jan Emil; Erikssen, Gunnar & Bodegard, Johan. 2012, Journal of the American College of Cardiology.
https://doi.org/10.1016/S0735-1097(12)61628-3 (Abstract)
The apolipoprotein E polymorphism and cardiovascular diseases-an autopsy study. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael; Brorson, Sverre Henning & Mæhlen, Jan. 2012, Cardiovascular pathology.
https://doi.org/10.1016/j.carpath.2012.02.005 (Academic article)
The apolipoprotein E polymorphism and cardiovascular diseases-an autopsy study. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael; Brorson, Sverre Henning & Mæhlen, Jan. 2012, Cardiovascular pathology.
https://doi.org/10.1016/j.carpath.2012.02.005 (Academic article)
The PtdIns3P-Binding Protein Phafin 2 Mediates Epidermal Growth Factor Receptor Degradation by Promoting Endosome Fusion. Pedersen, Nina Marie; Raiborg, Camilla; Brech, Andreas; Skarpen, Ellen; Roxrud, Ingrid; Platta, Harald W.; Liestøl, Knut & Stenmark, Harald Alfred. 2012, Traffic: The moving front of cell biology.
https://doi.org/10.1111/j.1600-0854.2012.01400.x (Academic article)
The PtdIns3P-Binding Protein Phafin 2 Mediates Epidermal Growth Factor Receptor Degradation by Promoting Endosome Fusion. Pedersen, Nina Marie; Raiborg, Camilla; Brech, Andreas; Skarpen, Ellen; Roxrud, Ingrid; Platta, Harald W.; Liestøl, Knut & Stenmark, Harald Alfred. 2012, Traffic: The moving front of cell biology.
https://doi.org/10.1111/j.1600-0854.2012.01400.x (Academic article)
The Terminal Part of the QT Interval (T peak to T end): A Predictor of Mortality after Acute Myocardial Infarction. Erikssen, Gunnar; Liestøl, Knut; Gullestad, Lars; Haugaa, Kristina; Bendz, Bjørn & Amlie, Jan Peder. 2012, Annals of Noninvasive Electrocardiology.
https://doi.org/10.1111/j.1542-474X.2012.00493.x (Academic article)
The Terminal Part of the QT Interval (T peak to T end): A Predictor of Mortality after Acute Myocardial Infarction. Erikssen, Gunnar; Liestøl, Knut; Gullestad, Lars; Haugaa, Kristina; Bendz, Bjørn & Amlie, Jan Peder. 2012, Annals of Noninvasive Electrocardiology.
https://doi.org/10.1111/j.1542-474X.2012.00493.x (Academic article)
Towards a quantitative understanding of the MITF-PIAS3-STAT3 connection. Thingnes, Josef; Lavelle, Timothy J.; Gjuvsland, Arne Bjørke; Omholt, Stig W & Hovig, Eivind. 2012, BMC Systems Biology.
https://doi.org/10.1186/1752-0509-6-11 (Academic article)
Towards a quantitative understanding of the MITF-PIAS3-STAT3 connection. Thingnes, Josef; Lavelle, Timothy J.; Gjuvsland, Arne Bjørke; Omholt, Stig W & Hovig, Eivind. 2012, BMC Systems Biology.
https://doi.org/10.1186/1752-0509-6-11 (Academic article)
Understanding the Melanocyte Distribution in Human Epidermis: An Agent-Based Computational Model Approach. Thingnes, Josef; Lavelle, Timothy J.; Hovig, Eivind & Omholt, Stig W. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0040377 (Academic article)
Understanding the Melanocyte Distribution in Human Epidermis: An Agent-Based Computational Model Approach. Thingnes, Josef; Lavelle, Timothy J.; Hovig, Eivind & Omholt, Stig W. 2012, PLOS ONE.
https://doi.org/10.1371/journal.pone.0040377 (Academic article)
Upper Normal Blood Pressures Predict Incident Atrial Fibrillation in Healthy Middle-Aged Men A 35-Year Follow-Up Study. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2012, Hypertension.
https://doi.org/10.1161/HYPERTENSIONAHA.111.179713 (Academic article)
Upper Normal Blood Pressures Predict Incident Atrial Fibrillation in Healthy Middle-Aged Men A 35-Year Follow-Up Study. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2012, Hypertension.
https://doi.org/10.1161/HYPERTENSIONAHA.111.179713 (Academic article)
Vitamin D receptor binding, chromatin states and association with multiple sclerosis. Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Ragnedda, Giammario; Morahan, Julia; Watson, Corey T; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V. 2012, Human Molecular Genetics.
https://doi.org/10.1093/hmg/dds189 (Academic article)
Vitamin D receptor binding, chromatin states and association with multiple sclerosis. Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Ragnedda, Giammario; Morahan, Julia; Watson, Corey T; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V. 2012, Human Molecular Genetics.
https://doi.org/10.1093/hmg/dds189 (Academic article)
2023
A Breast Cancer Polygenic Risk Score Is Feasible for Risk Stratification in the Norwegian Population. Akdeniz, Bayram Cevdet ; Mattingsdal, Morten; Dominguez-Valentin, Mev; Frei, Oleksandr; Shadrin, Alexey; Puustusmaa, Mikk; Saar, Regina; Sõber, Siim; Møller, Pål; Andreassen, Ole et al.. 2023, Cancers. https://doi.org/10.3390/cancers15164124 (Academic article)A Breast Cancer Polygenic Risk Score Is Feasible for Risk Stratification in the Norwegian Population. Akdeniz, Bayram Cevdet ; Mattingsdal, Morten; Dominguez-Valentin, Mev; Frei, Oleksandr; Shadrin, Alexey; Puustusmaa, Mikk; Saar, Regina; Sõber, Siim; Møller, Pål; Andreassen, Ole et al.. 2023, Cancers. https://doi.org/10.3390/cancers15164124 (Academic article)
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. Hsieh, Ping-Han; Lopes-Ramos, Camila Miranda; Zucknick, Manuela; Sandve, Geir Kjetil Ferkingstad; Glass, Kimberly & Kuijjer, Marieke. 2023, Bioinformatics. https://doi.org/10.1093/bioinformatics/btad610 (Academic article)
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. Hsieh, Ping-Han; Lopes-Ramos, Camila Miranda; Zucknick, Manuela; Sandve, Geir Kjetil Ferkingstad; Glass, Kimberly & Kuijjer, Marieke. 2023, Bioinformatics. https://doi.org/10.1093/bioinformatics/btad610 (Academic article)
ANDA: an open-source tool for automated image analysis of in vitro neuronal cells. Wæhler, Hallvard Austin; Labba, Nils-Anders Johannes; Paulsen, Ragnhild Elisabeth Heimtun; Sandve, Geir Kjetil Ferkingstad & Eskeland, Ragnhild. 2023, BMC Neuroscience. https://doi.org/10.1186/s12868-023-00826-z (Academic article)
ANDA: an open-source tool for automated image analysis of in vitro neuronal cells. Wæhler, Hallvard Austin; Labba, Nils-Anders Johannes; Paulsen, Ragnhild Elisabeth Heimtun; Sandve, Geir Kjetil Ferkingstad & Eskeland, Ragnhild. 2023, BMC Neuroscience. https://doi.org/10.1186/s12868-023-00826-z (Academic article)
Artificial intelligence-driven prediction of COVID-19-related hospitalization and death: a systematic review. Shakibfar, Saeed; Nyberg, Fredrik; Li, Huiqi; Zhao, Jing; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Pavlović, Milena; Hajiebrahimi, Mohammadhossein; Andersen, Morten & Sessa, Maurizio. 2023, Frontiers in Public Health. https://doi.org/10.3389/fpubh.2023.1183725 (Academic literature review)
Artificial intelligence-driven prediction of COVID-19-related hospitalization and death: a systematic review. Shakibfar, Saeed; Nyberg, Fredrik; Li, Huiqi; Zhao, Jing; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Pavlović, Milena; Hajiebrahimi, Mohammadhossein; Andersen, Morten & Sessa, Maurizio. 2023, Frontiers in Public Health. https://doi.org/10.3389/fpubh.2023.1183725 (Academic literature review)
Chromosomal instability and a deregulated cell cycle are intrinsic features of high-risk gastrointestinal stromal tumours with a metastatic potential. Namløs, Heidi Maria; Khelik, Ksenia; Nakken, Sigve; Vodak, Daniel; Hovig, Eivind; Myklebost, Ola; Pedersen, Kjetil Boye & Meza, Leonardo Zepeda. 2023, Molecular Oncology. https://doi.org/10.1002/1878-0261.13514 (Academic article)
Chromosomal instability and a deregulated cell cycle are intrinsic features of high-risk gastrointestinal stromal tumours with a metastatic potential. Namløs, Heidi Maria; Khelik, Ksenia; Nakken, Sigve; Vodak, Daniel; Hovig, Eivind; Myklebost, Ola; Pedersen, Kjetil Boye & Meza, Leonardo Zepeda. 2023, Molecular Oncology. https://doi.org/10.1002/1878-0261.13514 (Academic article)
Comprehensive interrogation of gene lists from genome-scale cancer screens with oncoEnrichR. Nakken, Sigve; Gundersen, Sveinung; Bernal, Fabian Leonardo Martinez; Polychronopoulos, Dimitris; Hovig, Eivind & Wesche, Jørgen. 2023, International Journal of Cancer. https://doi.org/10.1002/ijc.34666 (Academic article)
Comprehensive interrogation of gene lists from genome-scale cancer screens with oncoEnrichR. Nakken, Sigve; Gundersen, Sveinung; Bernal, Fabian Leonardo Martinez; Polychronopoulos, Dimitris; Hovig, Eivind & Wesche, Jørgen. 2023, International Journal of Cancer. https://doi.org/10.1002/ijc.34666 (Academic article)
DagSim: Combining DAG-based model structure with unconstrained data types and relations for flexible, transparent, and modularized data simulation. al Hajj, Ghadi; Pensar, Johan & Sandve, Geir Kjetil Ferkingstad. 2023, PLOS ONE. https://doi.org/10.1371/journal.pone.0284443 (Academic article)
DagSim: Combining DAG-based model structure with unconstrained data types and relations for flexible, transparent, and modularized data simulation. al Hajj, Ghadi; Pensar, Johan & Sandve, Geir Kjetil Ferkingstad. 2023, PLOS ONE. https://doi.org/10.1371/journal.pone.0284443 (Academic article)
Dominantly inherited micro-satellite instable cancer – the four Lynch syndromes - an EHTG, PLSD position statement. Møller, Pål; Seppälä, Toni T.; Ahadova, Aysel; Crosbie, Emma J.; Holinski-Feder, Elke; Scott, Rodney; Haupt, Saskia; Möslein, Gabriela; Winship, Ingrid; Broeke, Sanne W. Bajwa-ten et al.. 2023, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-023-00263-3 (Academic literature review)
Dominantly inherited micro-satellite instable cancer – the four Lynch syndromes - an EHTG, PLSD position statement. Møller, Pål; Seppälä, Toni T.; Ahadova, Aysel; Crosbie, Emma J.; Holinski-Feder, Elke; Scott, Rodney; Haupt, Saskia; Möslein, Gabriela; Winship, Ingrid; Broeke, Sanne W. Bajwa-ten et al.. 2023, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-023-00263-3 (Academic literature review)
Effects of prenatal exposure to (es)citalopram and maternal depression during pregnancy on DNA methylation and child neurodevelopment. Olstad, Emilie Willoch; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Lyle, Robert & Gervin, Kristina. 2023, Translational Psychiatry. https://doi.org/10.1038/s41398-023-02441-2 (Academic article)
Effects of prenatal exposure to (es)citalopram and maternal depression during pregnancy on DNA methylation and child neurodevelopment. Olstad, Emilie Willoch; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Lyle, Robert & Gervin, Kristina. 2023, Translational Psychiatry. https://doi.org/10.1038/s41398-023-02441-2 (Academic article)
Gene expression and copy number profiling of follicular lymphoma biopsies from patients treated with first-line rituximab without chemotherapy. Leich, E.; Brodtkorb, Marianne; Schmidt, T.; Altenbuchinger, M.; Lingjærde, Ole Christian; Lockmer, S.; Holte, Harald; Nedeva, T.; Grieb, T.; Sander, B. et al.. 2023, Leukemia and Lymphoma. https://doi.org/10.1080/10428194.2023.2240462 (Academic article)
Gene expression and copy number profiling of follicular lymphoma biopsies from patients treated with first-line rituximab without chemotherapy. Leich, E.; Brodtkorb, Marianne; Schmidt, T.; Altenbuchinger, M.; Lingjærde, Ole Christian; Lockmer, S.; Holte, Harald; Nedeva, T.; Grieb, T.; Sander, B. et al.. 2023, Leukemia and Lymphoma. https://doi.org/10.1080/10428194.2023.2240462 (Academic article)
hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks. Kalyanasundaram, Sumana; Lefol, Yohan Pierre; Gundersen, Sveinung; Rognes, Torbjørn; Alsøe, Lene; Nilsen, Hilde; Hovig, Eivind; Sandve, Geir Kjetil Ferkingstad & Domanska, Diana. 2023, PLOS ONE. https://doi.org/10.1371/journal.pone.0286330 (Academic article)
hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks. Kalyanasundaram, Sumana; Lefol, Yohan Pierre; Gundersen, Sveinung; Rognes, Torbjørn; Alsøe, Lene; Nilsen, Hilde; Hovig, Eivind; Sandve, Geir Kjetil Ferkingstad & Domanska, Diana. 2023, PLOS ONE. https://doi.org/10.1371/journal.pone.0286330 (Academic article)
HoCoRT: host contamination removal tool. Rumbavicius, Ignas; Rounge, Trine Ballestad & Rognes, Torbjørn. 2023, BMC Bioinformatics. https://doi.org/10.1186/s12859-023-05492-w (Academic article)
HoCoRT: host contamination removal tool. Rumbavicius, Ignas; Rounge, Trine Ballestad & Rognes, Torbjørn. 2023, BMC Bioinformatics. https://doi.org/10.1186/s12859-023-05492-w (Academic article)
Identification of gluten T cell epitopes driving celiac disease. Chlubnova, Marketa; Christophersen, Asbjørn Otto; Sandve, Geir Kjetil Ferkingstad; Lundin, Knut Erik Aslaksen; Jahnsen, Jørgen; Dahal-Koirala, Shiva & Sollid, Ludvig Magne. 2023, Science Advances. https://doi.org/10.1126/sciadv.ade5800 (Academic article)
Identification of gluten T cell epitopes driving celiac disease. Chlubnova, Marketa; Christophersen, Asbjørn Otto; Sandve, Geir Kjetil Ferkingstad; Lundin, Knut Erik Aslaksen; Jahnsen, Jørgen; Dahal-Koirala, Shiva & Sollid, Ludvig Magne. 2023, Science Advances. https://doi.org/10.1126/sciadv.ade5800 (Academic article)
Linguistically inspired roadmap for building biologically reliable protein language models. Vu, Mai Ha; Akbar, Rahmad; Robert, Philippe; Sandve, Geir Kjetil Ferkingstad; Haug, Dag Trygve Truslew & Greiff, Victor. 2023, Nature Machine Intelligence. https://doi.org/10.1038/s42256-023-00637-1 (Article in business/trade/industry journal)
Linguistically inspired roadmap for building biologically reliable protein language models. Vu, Mai Ha; Akbar, Rahmad; Robert, Philippe; Sandve, Geir Kjetil Ferkingstad; Haug, Dag Trygve Truslew & Greiff, Victor. 2023, Nature Machine Intelligence. https://doi.org/10.1038/s42256-023-00637-1 (Article in business/trade/industry journal)
Machine learning-driven development of a disease risk score for COVID-19 hospitalization and mortality: a Swedish and Norwegian register-based study. Shakibfar, Saeed; Zhao, Jing; Li, Huiqi; Nordeng, Hedvig Marie Egeland; Lupattelli, Angela; Pavlović, Milena; Sandve, Geir Kjetil Ferkingstad; Nyberg, Fredrik; Wettermark, Björn; Hajiebrahimi, Mohammadhossein et al.. 2023, Frontiers in Public Health. https://doi.org/10.3389/fpubh.2023.1258840 (Academic article)
Machine learning-driven development of a disease risk score for COVID-19 hospitalization and mortality: a Swedish and Norwegian register-based study. Shakibfar, Saeed; Zhao, Jing; Li, Huiqi; Nordeng, Hedvig Marie Egeland; Lupattelli, Angela; Pavlović, Milena; Sandve, Geir Kjetil Ferkingstad; Nyberg, Fredrik; Wettermark, Björn; Hajiebrahimi, Mohammadhossein et al.. 2023, Frontiers in Public Health. https://doi.org/10.3389/fpubh.2023.1258840 (Academic article)
Mortality by age, gene and gender in carriers of pathogenic mismatch repair gene variants receiving surveillance for early cancer diagnosis and treatment: a report from the prospective Lynch syndrome database. Dominguez-Valentin, Mev; Haupt, Saskia; Seppälä, Toni T.; Sampson, Julian R.; Sunde, Lone; Bernstein, Inge; Jenkins, Mark A.; Engel, Christoph; Aretz, Stefan; Nielsen, Maartje et al.. 2023, EClinicalMedicine. https://doi.org/10.1016/j.eclinm.2023.101909 (Academic article)
Mortality by age, gene and gender in carriers of pathogenic mismatch repair gene variants receiving surveillance for early cancer diagnosis and treatment: a report from the prospective Lynch syndrome database. Dominguez-Valentin, Mev; Haupt, Saskia; Seppälä, Toni T.; Sampson, Julian R.; Sunde, Lone; Bernstein, Inge; Jenkins, Mark A.; Engel, Christoph; Aretz, Stefan; Nielsen, Maartje et al.. 2023, EClinicalMedicine. https://doi.org/10.1016/j.eclinm.2023.101909 (Academic article)
simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods. Kanduri, Chakravarthi; Scheffer, Lonneke; Pavlović, Milena; Rand, Knut Dagestad; Chernigovskaya, Maria; Pirvandy, Oz; Yaari, Gur; Greiff, Victor & Sandve, Geir Kjetil Ferkingstad. 2023, GigaScience. https://doi.org/10.1093/gigascience/giad074 (Academic article)
simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods. Kanduri, Chakravarthi; Scheffer, Lonneke; Pavlović, Milena; Rand, Knut Dagestad; Chernigovskaya, Maria; Pirvandy, Oz; Yaari, Gur; Greiff, Victor & Sandve, Geir Kjetil Ferkingstad. 2023, GigaScience. https://doi.org/10.1093/gigascience/giad074 (Academic article)
T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases. Høye, Eirik; Dagenborg, Vegar Johansen; Kristensen, Annette Torgunrud; Lund-Andersen, Christin; Fretland, Åsmund Avdem; Lorenz, Susanne; Edwin, Bjørn von Gohren; Hovig, Eivind; Fromm, Bastian; Inderberg, Else Marit et al.. 2023, GigaScience. https://doi.org/10.1093/gigascience/giad032 (Academic article)
T cell receptor repertoire sequencing reveals chemotherapy-driven clonal expansion in colorectal liver metastases. Høye, Eirik; Dagenborg, Vegar Johansen; Kristensen, Annette Torgunrud; Lund-Andersen, Christin; Fretland, Åsmund Avdem; Lorenz, Susanne; Edwin, Bjørn von Gohren; Hovig, Eivind; Fromm, Bastian; Inderberg, Else Marit et al.. 2023, GigaScience. https://doi.org/10.1093/gigascience/giad032 (Academic article)
The genetic history of Scandinavia from the Roman Iron Age to the present. Rodriguez-Varela, Ricardo; Moore, Kristjan H.S.; Ebenesersdottir, Sunna; Kilinc, Gulsah; Kjellström, Anna; Papmehl-Dufay, Ludvig; Alfsdotter, Clara; Berglund, Birgitta; Alrawi, Loey; Kashuba, Natlija et al.. 2023, Cell. https://doi.org/10.1016/j.cell.2022.11.024 (Academic article)
The genetic history of Scandinavia from the Roman Iron Age to the present. Rodriguez-Varela, Ricardo; Moore, Kristjan H.S.; Ebenesersdottir, Sunna; Kilinc, Gulsah; Kjellström, Anna; Papmehl-Dufay, Ludvig; Alfsdotter, Clara; Berglund, Birgitta; Alrawi, Loey; Kashuba, Natlija et al.. 2023, Cell. https://doi.org/10.1016/j.cell.2022.11.024 (Academic article)
The Geriatric Prognostic Index: a clinical prediction model for survival of older diffuse large B-cell lymphoma patients treated with standard immunochemotherapy. Isaksen, Kathrine Thuestad; Galleberg, Renate Berget; Mastroianni, Maria Adele; Rinde, Marit; Rusten, Leiv Sindre; Barzenje, Dlawer Abdulla; Ramslien, Lloyd Frode; Fluge, Øystein; Jordhøy, Marit Slaaen; Meyer, Peter Albert et al.. 2023, Haematologica. https://doi.org/10.3324/haematol.2022.282289 (Academic article)
The Geriatric Prognostic Index: a clinical prediction model for survival of older diffuse large B-cell lymphoma patients treated with standard immunochemotherapy. Isaksen, Kathrine Thuestad; Galleberg, Renate Berget; Mastroianni, Maria Adele; Rinde, Marit; Rusten, Leiv Sindre; Barzenje, Dlawer Abdulla; Ramslien, Lloyd Frode; Fluge, Øystein; Jordhøy, Marit Slaaen; Meyer, Peter Albert et al.. 2023, Haematologica. https://doi.org/10.3324/haematol.2022.282289 (Academic article)
Transcriptomic subtyping of malignant peripheral nerve sheath tumours highlights immune signatures, genomic profiles, patient survival and therapeutic targets. Høland, Maren; Berg, Kaja Christine Graue; Eilertsen, Ina Andrassy; Bjerkehagen, Bodil; Kolberg, Matthias; Pedersen, Kjetil Boye; Lingjærde, Ole Christian; Guren, Tormod Kyrre; Mandahl, Nils; van den Berg, Eva et al.. 2023, EBioMedicine. https://doi.org/10.1016/j.ebiom.2023.104829 (Academic article)
Transcriptomic subtyping of malignant peripheral nerve sheath tumours highlights immune signatures, genomic profiles, patient survival and therapeutic targets. Høland, Maren; Berg, Kaja Christine Graue; Eilertsen, Ina Andrassy; Bjerkehagen, Bodil; Kolberg, Matthias; Pedersen, Kjetil Boye; Lingjærde, Ole Christian; Guren, Tormod Kyrre; Mandahl, Nils; van den Berg, Eva et al.. 2023, EBioMedicine. https://doi.org/10.1016/j.ebiom.2023.104829 (Academic article)
2022
A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer. Høye, Eirik; Fromm, Bastian; Böttger, Paul H.M.; Domanska, Diana; Kristensen, Annette Torgunrud; Lund-Andersen, Christin; Abrahamsen, Torveig Weum; Fretland, Åsmund Avdem; Dagenborg, Vegar Johansen; Lorenz, Susanne et al.. 2022, NAR Cancer. https://doi.org/10.1093/narcan/zcab051 (Academic article)A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer. Høye, Eirik; Fromm, Bastian; Böttger, Paul H.M.; Domanska, Diana; Kristensen, Annette Torgunrud; Lund-Andersen, Christin; Abrahamsen, Torveig Weum; Fretland, Åsmund Avdem; Dagenborg, Vegar Johansen; Lorenz, Susanne et al.. 2022, NAR Cancer. https://doi.org/10.1093/narcan/zcab051 (Academic article)
A national precision cancer medicine implementation initiative for Norway. Tasken, Kjetil; Russnes, Hege Elisabeth Giercksky; Aas, Eline; Bjørge, Line; Blix, Egil Støre; Ahlquist, Terje C.; Alikhani, Nyosha; Areffard, Mohammad Ali; Bergli, Elise; Edvardsen, Hege et al.. 2022, Nature Medicine. https://doi.org/10.1038/s41591-022-01777-4 (Letter to the editor)
A national precision cancer medicine implementation initiative for Norway. Tasken, Kjetil; Russnes, Hege Elisabeth Giercksky; Aas, Eline; Bjørge, Line; Blix, Egil Støre; Ahlquist, Terje C.; Alikhani, Nyosha; Areffard, Mohammad Ali; Bergli, Elise; Edvardsen, Hege et al.. 2022, Nature Medicine. https://doi.org/10.1038/s41591-022-01777-4 (Letter to the editor)
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking. Sandve, Geir Kjetil Ferkingstad & Greiff, Victor. 2022, Bioinformatics. https://doi.org/10.1093/bioinformatics/btac612 (Letter to the editor)
Access to ground truth at unconstrained size makes simulated data as indispensable as experimental data for bioinformatics methods development and benchmarking. Sandve, Geir Kjetil Ferkingstad & Greiff, Victor. 2022, Bioinformatics. https://doi.org/10.1093/bioinformatics/btac612 (Letter to the editor)
Characterization of the T cell receptor repertoire and melanoma tumor microenvironment upon combined treatment with ipilimumab and hTERT vaccination. Ellingsen, Espen Basmo; Bounova, Gergana; Kerzeli, Iliana; Anzar, Irantzu; Simnica, Donjete; Aamdal, Elin; Guren, Tormod Kyrre; Clancy, Trevor; Mezheyeuski, Artur; Inderberg, Else Marit et al.. 2022, Journal of Translational Medicine. https://doi.org/10.1186/s12967-022-03624-z (Academic article)
Characterization of the T cell receptor repertoire and melanoma tumor microenvironment upon combined treatment with ipilimumab and hTERT vaccination. Ellingsen, Espen Basmo; Bounova, Gergana; Kerzeli, Iliana; Anzar, Irantzu; Simnica, Donjete; Aamdal, Elin; Guren, Tormod Kyrre; Clancy, Trevor; Mezheyeuski, Artur; Inderberg, Else Marit et al.. 2022, Journal of Translational Medicine. https://doi.org/10.1186/s12967-022-03624-z (Academic article)
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers. Castro Mondragon, Jaime Abraham; Aure, Miriam Ragle; Lingjærde, Ole Christian; Langerød, Anita; Martens, John WM; Børresen-Dale, Anne-Lise; Kristensen, Vessela N. & Mathelier, Anthony. 2022, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkac1143 (Academic article)
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers. Castro Mondragon, Jaime Abraham; Aure, Miriam Ragle; Lingjærde, Ole Christian; Langerød, Anita; Martens, John WM; Børresen-Dale, Anne-Lise; Kristensen, Vessela N. & Mathelier, Anthony. 2022, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkac1143 (Academic article)
Clonal evolution after treatment pressure in multiple myeloma: heterogenous genomic aberrations and transcriptomic convergence. Misund, Kristine; Hofste op Bruinink, Davine; Coward, Eivind; Hoogenboezem, Remco M.; Rustad, Even Holth; Sanders, Mathijs A.; Rye, Morten Beck; Sponaas, Anne-Marit; van der Holt, Bronno; Zweegman, Sonja et al.. 2022, Leukemia. https://doi.org/10.1038/s41375-022-01597-y (Academic article)
Clonal evolution after treatment pressure in multiple myeloma: heterogenous genomic aberrations and transcriptomic convergence. Misund, Kristine; Hofste op Bruinink, Davine; Coward, Eivind; Hoogenboezem, Remco M.; Rustad, Even Holth; Sanders, Mathijs A.; Rye, Morten Beck; Sponaas, Anne-Marit; van der Holt, Bronno; Zweegman, Sonja et al.. 2022, Leukemia. https://doi.org/10.1038/s41375-022-01597-y (Academic article)
Clonal evolution in primary breast cancers under sequential epirubicin and docetaxel monotherapy. Venizelos, Andreas; Engebrethsen, Christina; Deng, Wei; Geisler, Jürgen; Geisler, Stephanie; Iversen, Gjertrud Titlestad; Aas, Turid; Aase, Hildegunn Siv; Seyedzadeh, Manouchehr; Steinskog, Eli Sihn Samdal et al.. 2022, Genome Medicine. https://doi.org/10.1186/s13073-022-01090-2 (Academic article)
Clonal evolution in primary breast cancers under sequential epirubicin and docetaxel monotherapy. Venizelos, Andreas; Engebrethsen, Christina; Deng, Wei; Geisler, Jürgen; Geisler, Stephanie; Iversen, Gjertrud Titlestad; Aas, Turid; Aase, Hildegunn Siv; Seyedzadeh, Manouchehr; Steinskog, Eli Sihn Samdal et al.. 2022, Genome Medicine. https://doi.org/10.1186/s13073-022-01090-2 (Academic article)
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching. Rognes, Torbjørn; Scheffer, Lonneke; Greiff, Victor & Sandve, Geir Kjetil. 2022, Bioinformatics. https://doi.org/10.1093/bioinformatics/btac505 (Academic article)
CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching. Rognes, Torbjørn; Scheffer, Lonneke; Greiff, Victor & Sandve, Geir Kjetil. 2022, Bioinformatics. https://doi.org/10.1093/bioinformatics/btac505 (Academic article)
Cooperative induction of receptor tyrosine kinases contributes to adaptive MAPK drug resistance in melanoma through the PI3K pathway. Alver, Tine Norman; Heintz, Karen Marie; Hovig, Eivind & Bøe, Sigurd. 2022, Cancer Reports. https://doi.org/10.1002/cnr2.1736 (Academic article)
Cooperative induction of receptor tyrosine kinases contributes to adaptive MAPK drug resistance in melanoma through the PI3K pathway. Alver, Tine Norman; Heintz, Karen Marie; Hovig, Eivind & Bøe, Sigurd. 2022, Cancer Reports. https://doi.org/10.1002/cnr2.1736 (Academic article)
Correction to: Improving public cancer care by implementing precision medicine in Norway: IMPRESS-Norway (Journal of Translational Medicine, (2022), 20, 1, (225), 10.1186/s12967-022-03432-5). Helland, Åslaug; Russnes, Hege Elisabeth Giercksky; Fagereng, Gro Live; Al-Shibli, Khalid Ibrahim; Andersson, Yvonne; Berg, Thomas; Bjørge, Line; Blix, Egil Støre; Bjerkehagen, Bodil; Brabrand, Sigmund et al.. 2022, Journal of Translational Medicine. https://doi.org/10.1186/s12967-022-03518-0 (Errata)
Correction to: Improving public cancer care by implementing precision medicine in Norway: IMPRESS-Norway (Journal of Translational Medicine, (2022), 20, 1, (225), 10.1186/s12967-022-03432-5). Helland, Åslaug; Russnes, Hege Elisabeth Giercksky; Fagereng, Gro Live; Al-Shibli, Khalid Ibrahim; Andersson, Yvonne; Berg, Thomas; Bjørge, Line; Blix, Egil Støre; Bjerkehagen, Bodil; Brabrand, Sigmund et al.. 2022, Journal of Translational Medicine. https://doi.org/10.1186/s12967-022-03518-0 (Errata)
Detecting statistical interactions in immune receptor datasets. Minotto, Thomas; Haff, Ingrid Hobæk & Sandve, Geir Kjetil Ferkingstad. 2022, EUT Edizioni Università di Trieste. (Academic chapter/article/Conference paper)
Detecting statistical interactions in immune receptor datasets. Minotto, Thomas; Haff, Ingrid Hobæk & Sandve, Geir Kjetil Ferkingstad. 2022, EUT Edizioni Università di Trieste. (Academic chapter/article/Conference paper)
Durable and dynamic hTERT immune responses following vaccination with the long-peptide cancer vaccine UV1: Long-Term follow-up of three phase i clinical trials. Ellingsen, Espen Basmo; Aamdal, Elin; Guren, Tormod Kyrre; Lilleby, Wolfgang; Brunsvig, Paal Fr.; Mangsbo, Sara M; Aamdal, Steinar; Hovig, Eivind; Mensali, Nadia; Gaudernack, Gustav et al.. 2022, Journal for ImmunoTherapy of Cancer (JITC). https://doi.org/10.1136/jitc-2021-004345 (Academic article)
Durable and dynamic hTERT immune responses following vaccination with the long-peptide cancer vaccine UV1: Long-Term follow-up of three phase i clinical trials. Ellingsen, Espen Basmo; Aamdal, Elin; Guren, Tormod Kyrre; Lilleby, Wolfgang; Brunsvig, Paal Fr.; Mangsbo, Sara M; Aamdal, Steinar; Hovig, Eivind; Mensali, Nadia; Gaudernack, Gustav et al.. 2022, Journal for ImmunoTherapy of Cancer (JITC). https://doi.org/10.1136/jitc-2021-004345 (Academic article)
Functional precision cancer medicine: drug sensitivity screening enabled by cell culture models. Flobak, Åsmund; Skånland, Sigrid S; Hovig, Eivind; Tasken, Kjetil & Russnes, Hege Elisabeth Giercksky. 2022, TIPS - Trends in Pharmacological Sciences. https://doi.org/10.1016/j.tips.2022.08.009 (Academic literature review)
Functional precision cancer medicine: drug sensitivity screening enabled by cell culture models. Flobak, Åsmund; Skånland, Sigrid S; Hovig, Eivind; Tasken, Kjetil & Russnes, Hege Elisabeth Giercksky. 2022, TIPS - Trends in Pharmacological Sciences. https://doi.org/10.1016/j.tips.2022.08.009 (Academic literature review)
Genetic Characterization in High-Risk Individuals from a Low-Resource City of Peru. Zavaleta, Elizabeth; Solis, Nelly; Palacios, Maria Isabel; Zevallos-Escobar, Liz Elva; Corales, Edison Vasquez; Bazo-Alvarez, Juan Carlos; Dominguez-Barrera, Constantino; Campos, Anthony; Wernhoff, Patrik; Ekstrøm, Per Olaf et al.. 2022, Cancers. https://doi.org/10.3390/cancers14225603 (Academic article)
Genetic Characterization in High-Risk Individuals from a Low-Resource City of Peru. Zavaleta, Elizabeth; Solis, Nelly; Palacios, Maria Isabel; Zevallos-Escobar, Liz Elva; Corales, Edison Vasquez; Bazo-Alvarez, Juan Carlos; Dominguez-Barrera, Constantino; Campos, Anthony; Wernhoff, Patrik; Ekstrøm, Per Olaf et al.. 2022, Cancers. https://doi.org/10.3390/cancers14225603 (Academic article)
Improving public cancer care by implementing precision medicine in Norway: IMPRESS-Norway. Helland, Åslaug; Russnes, Hege Elisabeth Giercksky; Fagereng, Gro Live; Al-Shibli, Khalid Ibrahim; Andersson, Yvonne; Berg, Thomas; Bjørge, Line; Blix, Egil Støre; Bjerkehagen, Bodil; Brabrand, Sigmund et al.. 2022, Journal of Translational Medicine. https://doi.org/10.1186/s12967-022-03432-5 (Article in business/trade/industry journal)
Improving public cancer care by implementing precision medicine in Norway: IMPRESS-Norway. Helland, Åslaug; Russnes, Hege Elisabeth Giercksky; Fagereng, Gro Live; Al-Shibli, Khalid Ibrahim; Andersson, Yvonne; Berg, Thomas; Bjørge, Line; Blix, Egil Støre; Bjerkehagen, Bodil; Brabrand, Sigmund et al.. 2022, Journal of Translational Medicine. https://doi.org/10.1186/s12967-022-03432-5 (Article in business/trade/industry journal)
In silico proof of principle of machine learning-based antibody design at unconstrained scale. Akbar, Rahmad; Robert, Philippe Paul Auguste; Weber, Cédric R.; Widrich, Michael; Frank, Robert; Pavlovic, Milena; Scheffer, Lonneke; Chernigovskaia, Maria; Snapkow, Igor; Slabodkin, Andrei et al.. 2022, mAbs. https://doi.org/10.1080/19420862.2022.2031482 (Academic article)
In silico proof of principle of machine learning-based antibody design at unconstrained scale. Akbar, Rahmad; Robert, Philippe Paul Auguste; Weber, Cédric R.; Widrich, Michael; Frank, Robert; Pavlovic, Milena; Scheffer, Lonneke; Chernigovskaia, Maria; Snapkow, Igor; Slabodkin, Andrei et al.. 2022, mAbs. https://doi.org/10.1080/19420862.2022.2031482 (Academic article)
KAGE: fast alignment-free graph-based genotyping of SNPs and short indels. Grytten, Ivar; Rand, Knut Dagestad & Sandve, Geir Kjetil Ferkingstad. 2022, Genome Biology. https://doi.org/10.1186/s13059-022-02771-2 (Academic article)
KAGE: fast alignment-free graph-based genotyping of SNPs and short indels. Grytten, Ivar; Rand, Knut Dagestad & Sandve, Geir Kjetil Ferkingstad. 2022, Genome Biology. https://doi.org/10.1186/s13059-022-02771-2 (Academic article)
Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures. Olstad, Emilie Willoch; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Lyle, Robert & Gervin, Kristina. 2022, Clinical Epigenetics. https://doi.org/10.1186/s13148-022-01299-3 (Academic article)
Low reliability of DNA methylation across Illumina Infinium platforms in cord blood: implications for replication studies and meta-analyses of prenatal exposures. Olstad, Emilie Willoch; Nordeng, Hedvig Marie Egeland; Sandve, Geir Kjetil Ferkingstad; Lyle, Robert & Gervin, Kristina. 2022, Clinical Epigenetics. https://doi.org/10.1186/s13148-022-01299-3 (Academic article)
MirGeneDB 2.1: toward a complete sampling of all major animal phyla. Fromm, Bastian; Høye, Eirik; Domanska, Diana; Zhong, Xiangfu; Aparicio-Puerta, Ernesto; Ovchinnikov, Vladimir; Umu, Sinan Ugur; Chabot, Peter J; Kang, Wenjing; Aslanzadeh, Morteza et al.. 2022, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkab1101 (Academic article)
MirGeneDB 2.1: toward a complete sampling of all major animal phyla. Fromm, Bastian; Høye, Eirik; Domanska, Diana; Zhong, Xiangfu; Aparicio-Puerta, Ernesto; Ovchinnikov, Vladimir; Umu, Sinan Ugur; Chabot, Peter J; Kang, Wenjing; Aslanzadeh, Morteza et al.. 2022, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkab1101 (Academic article)
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions. Rossini, Roberto; Kumar, Vipin; Mathelier, Anthony; Rognes, Torbjørn & Paulsen, Jonas. 2022, Genome Biology. https://doi.org/10.1186/s13059-022-02815-7 (Academic article)
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions. Rossini, Roberto; Kumar, Vipin; Mathelier, Anthony; Rognes, Torbjørn & Paulsen, Jonas. 2022, Genome Biology. https://doi.org/10.1186/s13059-022-02815-7 (Academic article)
Mutational analysis and protein profiling predict drug sensitivity in multiple myeloma cell lines. Giliberto, Mariaserena; Miranda Santana, Leonardo; Holien, Toril; Misund, Kristine; Nakken, Sigve; Vodak, Daniel; Hovig, Eivind; Meza, Leonardo Zepeda; Coward, Eivind; Waage, Anders et al.. 2022, Frontiers in Oncology. https://doi.org/10.3389/fonc.2022.1040730 (Academic article)
Mutational analysis and protein profiling predict drug sensitivity in multiple myeloma cell lines. Giliberto, Mariaserena; Miranda Santana, Leonardo; Holien, Toril; Misund, Kristine; Nakken, Sigve; Vodak, Daniel; Hovig, Eivind; Meza, Leonardo Zepeda; Coward, Eivind; Waage, Anders et al.. 2022, Frontiers in Oncology. https://doi.org/10.3389/fonc.2022.1040730 (Academic article)
NRF2 drives an oxidative stress response predictive of breast cancer. Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen; Skotheim, Rolf I.; Andersen, Sonja Benedikte; Zwiggelaar, Rosalie Theda Margien; Steigedal, Tonje S. et al.. 2022, Free Radical Biology & Medicine. https://doi.org/10.1016/j.freeradbiomed.2022.03.029 (Academic article)
NRF2 drives an oxidative stress response predictive of breast cancer. Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen; Skotheim, Rolf I.; Andersen, Sonja Benedikte; Zwiggelaar, Rosalie Theda Margien; Steigedal, Tonje S. et al.. 2022, Free Radical Biology & Medicine. https://doi.org/10.1016/j.freeradbiomed.2022.03.029 (Academic article)
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification. Kanduri, Chakravarthi; Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Chernigovskaia, Maria; Greiff, Victor & Sandve, Geir Kjetil Ferkingstad. 2022, GigaScience. https://doi.org/10.1093/gigascience/giac046 (Academic article)
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification. Kanduri, Chakravarthi; Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Chernigovskaia, Maria; Greiff, Victor & Sandve, Geir Kjetil Ferkingstad. 2022, GigaScience. https://doi.org/10.1093/gigascience/giac046 (Academic article)
Prognostic Significance of the Loss of Heterozygosity of KRAS in Early-Stage Lung Adenocarcinoma. Khadse, Anand; Haakensen, Vilde Drageset; Silwal-Pandit, Laxmi; Hamfjord, Julian; Micke, Patrick; Botling, Johan; Brustugun, Odd Terje; Lingjærde, Ole Christian; Helland, Åslaug & Kure, Elin Wenche Hegland. 2022, Frontiers in Oncology. https://doi.org/10.3389/fonc.2022.873532 (Academic article)
Prognostic Significance of the Loss of Heterozygosity of KRAS in Early-Stage Lung Adenocarcinoma. Khadse, Anand; Haakensen, Vilde Drageset; Silwal-Pandit, Laxmi; Hamfjord, Julian; Micke, Patrick; Botling, Johan; Brustugun, Odd Terje; Lingjærde, Ole Christian; Helland, Åslaug & Kure, Elin Wenche Hegland. 2022, Frontiers in Oncology. https://doi.org/10.3389/fonc.2022.873532 (Academic article)
Proteome Analysis of Pancreatic Tumors Implicates Extracellular Matrix in Patient Outcome. Silwal-Pandit, Laxmi; Stålberg, Stina Margrethe; Johansson, Henrik J.; Mermelekas, Georgios; Lothe, Inger Marie Bowitz; Skrede, Martina Landschoof; Dalsgaard, Astrid Marie; Nebdal, Daniel J.H.; Helland, Åslaug; Lingjærde, Ole Christian et al.. 2022, Cancer Research Communications. https://doi.org/10.1158/2767-9764.CRC-21-0100 (Academic article)
Proteome Analysis of Pancreatic Tumors Implicates Extracellular Matrix in Patient Outcome. Silwal-Pandit, Laxmi; Stålberg, Stina Margrethe; Johansson, Henrik J.; Mermelekas, Georgios; Lothe, Inger Marie Bowitz; Skrede, Martina Landschoof; Dalsgaard, Astrid Marie; Nebdal, Daniel J.H.; Helland, Åslaug; Lingjærde, Ole Christian et al.. 2022, Cancer Research Communications. https://doi.org/10.1158/2767-9764.CRC-21-0100 (Academic article)
Reference-based comparison of adaptive immune receptor repertoires. Weber, Cédric R.; Rubio, Teresa; Wang, Longlong; Zhang, Wei; Robert, Philippe Paul Auguste; Akbar, Rahmad; Snapkov, Igor; Wu, Jinghua; Kuijjer, Marieke; Tarazona, Sonia et al.. 2022, Cell Reports Methods. https://doi.org/10.1016/j.crmeth.2022.100269 (Academic article)
Reference-based comparison of adaptive immune receptor repertoires. Weber, Cédric R.; Rubio, Teresa; Wang, Longlong; Zhang, Wei; Robert, Philippe Paul Auguste; Akbar, Rahmad; Snapkov, Igor; Wu, Jinghua; Kuijjer, Marieke; Tarazona, Sonia et al.. 2022, Cell Reports Methods. https://doi.org/10.1016/j.crmeth.2022.100269 (Academic article)
screenwerk: a modular tool for the design and analysis of drug combination screens. Hanes, Robert; Ayuda-Duran, Maria del Pilar; Rønneberg, Leiv; Nakken, Sigve; Hovig, Eivind; Zucknick, Manuela & Enserink, Jorrit Martijn. 2022, Bioinformatics. https://doi.org/10.1093/bioinformatics/btac840 (Academic article)
screenwerk: a modular tool for the design and analysis of drug combination screens. Hanes, Robert; Ayuda-Duran, Maria del Pilar; Rønneberg, Leiv; Nakken, Sigve; Hovig, Eivind; Zucknick, Manuela & Enserink, Jorrit Martijn. 2022, Bioinformatics. https://doi.org/10.1093/bioinformatics/btac840 (Academic article)
Subtype and cell type specific expression of lncRNAs provide insight into breast cancer. Bjørklund, Sunniva; Aure, Miriam Ragle; Häkkinen, Jari; Vallon-Christersson, Johan; Kumar, Surendra; Bull Evensen, Katrine; Fleischer, Thomas; Tost, Jörg; Sahlberg, Kristine Kleivi; Mathelier, Anthony et al.. 2022, Communications Biology. https://doi.org/10.1038/s42003-022-03559-7 (Academic article)
Subtype and cell type specific expression of lncRNAs provide insight into breast cancer. Bjørklund, Sunniva; Aure, Miriam Ragle; Häkkinen, Jari; Vallon-Christersson, Johan; Kumar, Surendra; Bull Evensen, Katrine; Fleischer, Thomas; Tost, Jörg; Sahlberg, Kristine Kleivi; Mathelier, Anthony et al.. 2022, Communications Biology. https://doi.org/10.1038/s42003-022-03559-7 (Academic article)
TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences. Dahal-Koirala, Shiva; Balaban, Gabriel; Neumann, Ralf Stefan; Scheffer, Lonneke; Lundin, Knut; Greiff, Victor; Sollid, Ludvig Magne; Qiao, Shuo-Wang & Sandve, Geir Kjetil Ferkingstad. 2022, Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbab566 (Academic article)
TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences. Dahal-Koirala, Shiva; Balaban, Gabriel; Neumann, Ralf Stefan; Scheffer, Lonneke; Lundin, Knut; Greiff, Victor; Sollid, Ludvig Magne; Qiao, Shuo-Wang & Sandve, Geir Kjetil Ferkingstad. 2022, Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbab566 (Academic article)
The Norwegian Mother, Father, and Child cohort study (MoBa) genotyping data resource: MoBaPsychGen pipeline v.1. Corfield, Elizabeth Claire; Frei, Oleksandr; Shadrin, Alexey; Rahman, Zillur; Lin, Aihua; Athanasiu, Lavinia; Akdeniz, Bayram Cevdet; Hannigan, Laurie; Wootton, Robyn; Austerberry, Chloe et al.. 2022, Cold Spring Harbor Laboratory Press (CSHL). (Report)
The Norwegian Mother, Father, and Child cohort study (MoBa) genotyping data resource: MoBaPsychGen pipeline v.1. Corfield, Elizabeth Claire; Frei, Oleksandr; Shadrin, Alexey; Rahman, Zillur; Lin, Aihua; Athanasiu, Lavinia; Akdeniz, Bayram Cevdet; Hannigan, Laurie; Wootton, Robyn; Austerberry, Chloe et al.. 2022, Cold Spring Harbor Laboratory Press (CSHL). (Report)
The population genomic legacy of the second plague pandemic. Gopalakrishnan, Shyam; Ebenesersdottir, S.Sunna; Lundstrøm, Inge K.C.; Turner-Walker, Gordon; Moore, Kristjan H.S.; Luisi, Pierre; Magaryan, Ashot; Martin, Michael David; Ellegaard, Martin Rene; Magnusson, Olafur T. et al.. 2022, Current Biology. https://doi.org/10.1016/j.cub.2022.09.023 (Academic article)
The population genomic legacy of the second plague pandemic. Gopalakrishnan, Shyam; Ebenesersdottir, S.Sunna; Lundstrøm, Inge K.C.; Turner-Walker, Gordon; Moore, Kristjan H.S.; Luisi, Pierre; Magaryan, Ashot; Martin, Michael David; Ellegaard, Martin Rene; Magnusson, Olafur T. et al.. 2022, Current Biology. https://doi.org/10.1016/j.cub.2022.09.023 (Academic article)
The role of pressure and defects in the wurtzite to rock salt transition in cadmium selenide. Lervik, Anders; Svenum, Ingeborg-Helene; Wang, Zhaohui; Cabriolu, Raffaela; Riccardi, Enrico; Andersson, Stefan & van Erp, Titus Sebastiaan. 2022, Physical Chemistry, Chemical Physics - PCCP. https://doi.org/10.1039/d1cp05051f (Academic article)
The role of pressure and defects in the wurtzite to rock salt transition in cadmium selenide. Lervik, Anders; Svenum, Ingeborg-Helene; Wang, Zhaohui; Cabriolu, Raffaela; Riccardi, Enrico; Andersson, Stefan & van Erp, Titus Sebastiaan. 2022, Physical Chemistry, Chemical Physics - PCCP. https://doi.org/10.1039/d1cp05051f (Academic article)
Thin film breakage in oil–in–water emulsions, a multidisciplinary study. Aarøen, Ola; Riccardi, Enrico; van Erp, Titus Sebastiaan & Sletmoen, Marit. 2022, Colloids and Surfaces A: Physicochemical and Engineering Aspects. https://doi.org/10.1016/j.colsurfa.2021.127808 (Academic article)
Thin film breakage in oil–in–water emulsions, a multidisciplinary study. Aarøen, Ola; Riccardi, Enrico; van Erp, Titus Sebastiaan & Sletmoen, Marit. 2022, Colloids and Surfaces A: Physicochemical and Engineering Aspects. https://doi.org/10.1016/j.colsurfa.2021.127808 (Academic article)
Unconstrained generation of synthetic antibody–antigen structures to guide machine learning methodology for antibody specificity prediction. Robert, Philippe Paul Auguste; Akbar, Rahmad; Frank, Robert; Pavlović, Milena; Widrich, Michael; Snapkov, Igor; Slabodkin, Andrei; Chernigovskaya, Maria; Scheffer, Lonneke; Smorodina, Eva et al.. 2022, Nature Computational Science. https://doi.org/10.1038/s43588-022-00372-4 (Academic article)
Unconstrained generation of synthetic antibody–antigen structures to guide machine learning methodology for antibody specificity prediction. Robert, Philippe Paul Auguste; Akbar, Rahmad; Frank, Robert; Pavlović, Milena; Widrich, Michael; Snapkov, Igor; Slabodkin, Andrei; Chernigovskaya, Maria; Scheffer, Lonneke; Smorodina, Eva et al.. 2022, Nature Computational Science. https://doi.org/10.1038/s43588-022-00372-4 (Academic article)
Which single-cell analysis tool is best? Scientists offer advice. Dance, Amber; Sandve, Geir Kjetil Ferkingstad; Morris, Samantha; Saez-Rodriguez, Julio; Heyn, Holger & Levin, Joshua. 2022, Nature. https://doi.org/10.1038/d41586-022-04426-5 (Interview journal)
Which single-cell analysis tool is best? Scientists offer advice. Dance, Amber; Sandve, Geir Kjetil Ferkingstad; Morris, Samantha; Saez-Rodriguez, Julio; Heyn, Holger & Levin, Joshua. 2022, Nature. https://doi.org/10.1038/d41586-022-04426-5 (Interview journal)
2021
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding. Akbar, Rahmad; Robert, Philippe Paul Auguste; Pavlović, Milena; Jeliazkov, Jeliazko R.; Snapkov, Igor; Slabodkin, Andrei; Weber, Cédric R.; Scheffer, Lonneke; Miho, Enkelejda; Haff, Ingrid Hobæk et al.. 2021, Cell reports. https://doi.org/10.1016/j.celrep.2021.108856 (Academic article)A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding. Akbar, Rahmad; Robert, Philippe Paul Auguste; Pavlović, Milena; Jeliazkov, Jeliazko R.; Snapkov, Igor; Slabodkin, Andrei; Weber, Cédric R.; Scheffer, Lonneke; Miho, Enkelejda; Haff, Ingrid Hobæk et al.. 2021, Cell reports. https://doi.org/10.1016/j.celrep.2021.108856 (Academic article)
A Systemic Protein Deviation Score Linked to PD-1+ CD8+ T Cell Expansion That Predicts Overall Survival in Diffuse Large B Cell Lymphoma. Ask, Eivind Heggernes; Tschan-Plessl, Astrid; Gjerdingen, Thea Johanne; Hoel, Hanna Julie; Sætersmoen, Michelle Lu; Wiiger, Merete Thune; Olweus, Johanna; Wahlin, Björn E.; Lingjærde, Ole Christian; Horowitz, Amir et al.. 2021, Med. https://doi.org/10.1016/j.medj.2020.10.006 (Academic article)
A Systemic Protein Deviation Score Linked to PD-1+ CD8+ T Cell Expansion That Predicts Overall Survival in Diffuse Large B Cell Lymphoma. Ask, Eivind Heggernes; Tschan-Plessl, Astrid; Gjerdingen, Thea Johanne; Hoel, Hanna Julie; Sætersmoen, Michelle Lu; Wiiger, Merete Thune; Olweus, Johanna; Wahlin, Björn E.; Lingjærde, Ole Christian; Horowitz, Amir et al.. 2021, Med. https://doi.org/10.1016/j.medj.2020.10.006 (Academic article)
Analysis in the Prospective Lynch Syndrome Database identifies sarcoma as part of the Lynch syndrome tumor spectrum. Dominguez-Valentin, Mev; Sampson, Julian R.; Møller, Pål; Seppälä, Toni T.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2021, International Journal of Cancer. https://doi.org/10.1002/ijc.33214 (Letter to the editor)
Analysis in the Prospective Lynch Syndrome Database identifies sarcoma as part of the Lynch syndrome tumor spectrum. Dominguez-Valentin, Mev; Sampson, Julian R.; Møller, Pål; Seppälä, Toni T.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2021, International Journal of Cancer. https://doi.org/10.1002/ijc.33214 (Letter to the editor)
Biophysically detailed forward modeling of the neural origin of EEG and MEG signals. Næss, Solveig; Halnes, Geir; Hagen, Espen; Hagler, Donald J.; Dale, Anders M.; Einevoll, Gaute & Ness, Torbjørn Vefferstad. 2021, NeuroImage. https://doi.org/10.1016/j.neuroimage.2020.117467 (Academic article)
Biophysically detailed forward modeling of the neural origin of EEG and MEG signals. Næss, Solveig; Halnes, Geir; Hagen, Espen; Hagler, Donald J.; Dale, Anders M.; Einevoll, Gaute & Ness, Torbjørn Vefferstad. 2021, NeuroImage. https://doi.org/10.1016/j.neuroimage.2020.117467 (Academic article)
Breast cancer metastasis: immune profiling of lymph nodes reveals exhaustion of effector T cells and immunosuppression. Rye, Inga Hansine; Huse, Kanutte; Josefsson, Sarah Elisabet; Kildal, Wanja; Danielsen, Håvard Emil Greger; Schlichting, Ellen; Garred, Øystein; Riis, Margit; Lingjærde, Ole Christian; Myklebust, June Helen et al.. 2021, Molecular Oncology. https://doi.org/10.1002/1878-0261.13047 (Academic article)
Breast cancer metastasis: immune profiling of lymph nodes reveals exhaustion of effector T cells and immunosuppression. Rye, Inga Hansine; Huse, Kanutte; Josefsson, Sarah Elisabet; Kildal, Wanja; Danielsen, Håvard Emil Greger; Schlichting, Ellen; Garred, Øystein; Riis, Margit; Lingjærde, Ole Christian; Myklebust, June Helen et al.. 2021, Molecular Oncology. https://doi.org/10.1002/1878-0261.13047 (Academic article)
Cancer Predisposition Sequencing Reporter (CPSR): A flexible variant report engine for high-throughput germline screening in cancer. Nakken, Sigve; Saveliev, Vladislav; Hofmann, Oliver; Møller, Pål; Myklebost, Ola & Hovig, Eivind. 2021, International Journal of Cancer. https://doi.org/10.1002/ijc.33749 (Academic article)
Cancer Predisposition Sequencing Reporter (CPSR): A flexible variant report engine for high-throughput germline screening in cancer. Nakken, Sigve; Saveliev, Vladislav; Hofmann, Oliver; Møller, Pål; Myklebost, Ola & Hovig, Eivind. 2021, International Journal of Cancer. https://doi.org/10.1002/ijc.33749 (Academic article)
Chemistrees: Data-Driven Identification of Reaction Pathways via Machine Learning. Roet, Sander; Daub, Christopher David & Riccardi, Enrico. 2021, Journal of Chemical Theory and Computation. https://doi.org/10.1021/acs.jctc.1c00458 (Academic article)
Chemistrees: Data-Driven Identification of Reaction Pathways via Machine Learning. Roet, Sander; Daub, Christopher David & Riccardi, Enrico. 2021, Journal of Chemical Theory and Computation. https://doi.org/10.1021/acs.jctc.1c00458 (Academic article)
Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB. Lemma, Roza Berhanu; Ledsaak, Marit; Fuglerud, Bettina Maria; Sandve, Geir Kjetil; Eskeland, Ragnhild & Gabrielsen, Odd Stokke. 2021, Scientific Reports. https://doi.org/10.1038/s41598-021-88516-w (Academic article)
Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB. Lemma, Roza Berhanu; Ledsaak, Marit; Fuglerud, Bettina Maria; Sandve, Geir Kjetil; Eskeland, Ragnhild & Gabrielsen, Odd Stokke. 2021, Scientific Reports. https://doi.org/10.1038/s41598-021-88516-w (Academic article)
Clinicopathological factors associated with tumour-specific mutation detection in plasma of patients with RAS-mutated or BRAF-mutated metastatic colorectal cancer. Hamfjord, Julian; Guren, Tormod Kyrre; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Dajani, Olav; Lingjærde, Ole Christian; Tveit, Magne Kjell; Pallisgaard, Niels; Spindler, Karen-Lise Garm et al.. 2021, International Journal of Cancer. https://doi.org/10.1002/ijc.33672 (Academic article)
Clinicopathological factors associated with tumour-specific mutation detection in plasma of patients with RAS-mutated or BRAF-mutated metastatic colorectal cancer. Hamfjord, Julian; Guren, Tormod Kyrre; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Dajani, Olav; Lingjærde, Ole Christian; Tveit, Magne Kjell; Pallisgaard, Niels; Spindler, Karen-Lise Garm et al.. 2021, International Journal of Cancer. https://doi.org/10.1002/ijc.33672 (Academic article)
Combining a universal telomerase based cancer vaccine with ipilimumab in patients with metastatic melanoma - Five-year follow up of a phase I/IIa trial. Aamdal, Elin; Inderberg, Else Marit ; Ellingsen, Espen Basmo; Rasch, Wenche; Brunsvig, Paal Fr.; Aamdal, Steinar; Heintz, Karen Marie; Vodák, Daniel; Nakken, Sigve; Hovig, Eivind et al.. 2021, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.663865 (Academic article)
Combining a universal telomerase based cancer vaccine with ipilimumab in patients with metastatic melanoma - Five-year follow up of a phase I/IIa trial. Aamdal, Elin; Inderberg, Else Marit ; Ellingsen, Espen Basmo; Rasch, Wenche; Brunsvig, Paal Fr.; Aamdal, Steinar; Heintz, Karen Marie; Vodák, Daniel; Nakken, Sigve; Hovig, Eivind et al.. 2021, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.663865 (Academic article)
Comprehensive Analysis of CDR3 Sequences in Gluten-Specific T-Cell Receptors Reveals a Dominant R-Motif and Several New Minor Motifs. Dahal-Koirala, Shiva; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Christophersen, Asbjørn; Lundin, Knut E. A.; Sandve, Geir Kjetil; Qiao, Shuo-Wang & Sollid, Ludvig M.. 2021, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.639672 (Academic article)
Comprehensive Analysis of CDR3 Sequences in Gluten-Specific T-Cell Receptors Reveals a Dominant R-Motif and Several New Minor Motifs. Dahal-Koirala, Shiva; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Christophersen, Asbjørn; Lundin, Knut E. A.; Sandve, Geir Kjetil; Qiao, Shuo-Wang & Sollid, Ludvig M.. 2021, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.639672 (Academic article)
Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq. Yao, Ying; Wyrozemski, Lukasz Adam; Lundin, Knut; Sandve, Geir Kjetil Ferkingstad & Qiao, Shuo Wang. 2021, PLOS ONE. https://doi.org/10.1371/journal.pone.0258029 (Academic article)
Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq. Yao, Ying; Wyrozemski, Lukasz Adam; Lundin, Knut; Sandve, Geir Kjetil Ferkingstad & Qiao, Shuo Wang. 2021, PLOS ONE. https://doi.org/10.1371/journal.pone.0258029 (Academic article)
Editorial: Genomic Colocalization and Enrichment Analyses. Kanduri, Chakravarthi; Sandve, Geir Kjetil Ferkingstad; Hovig, Eivind; De, Subhajyoti & Layer, Ryan. 2021, Frontiers in Genetics. https://doi.org/10.3389/fgene.2020.617876 (Editoral)
Editorial: Genomic Colocalization and Enrichment Analyses. Kanduri, Chakravarthi; Sandve, Geir Kjetil Ferkingstad; Hovig, Eivind; De, Subhajyoti & Layer, Ryan. 2021, Frontiers in Genetics. https://doi.org/10.3389/fgene.2020.617876 (Editoral)
Erratum: The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID (NAR Cancer (2020) 2:3 (zcaa019) DOI: 10.1093/narcan/zcaa019). Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan et al.. 2021, NAR Cancer. https://doi.org/10.1093/NARCAN/ZCAA045 (Errata)
Erratum: The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID (NAR Cancer (2020) 2:3 (zcaa019) DOI: 10.1093/narcan/zcaa019). Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan et al.. 2021, NAR Cancer. https://doi.org/10.1093/NARCAN/ZCAA045 (Errata)
Exploring the effects of approach velocity on depletion force and coalescence in oil-in-water emulsions. Aarøen, Ola; Riccardi, Enrico & Sletmoen, Marit. 2021, RSC Advances. https://doi.org/10.1039/d1ra00661d (Academic article)
Exploring the effects of approach velocity on depletion force and coalescence in oil-in-water emulsions. Aarøen, Ola; Riccardi, Enrico & Sletmoen, Marit. 2021, RSC Advances. https://doi.org/10.1039/d1ra00661d (Academic article)
Exploring the role of the multiple sclerosis susceptibility gene CLEC16A in T cells. Eriksson, Anna Maria; Leikfoss, Ingvild Sørum; Abrahamsen, Greger; Gjerstad, Vibeke Sundvold; Mesel Isom, Martine; Keshari, Pankaj; Rognes, Torbjørn; Landsverk, Ole J. B.; Bos, Steffan Daniel; Harbo, Hanne Flinstad et al.. 2021, Scandinavian Journal of Immunology. https://doi.org/10.1111/sji.13050 (Academic article)
Exploring the role of the multiple sclerosis susceptibility gene CLEC16A in T cells. Eriksson, Anna Maria; Leikfoss, Ingvild Sørum; Abrahamsen, Greger; Gjerstad, Vibeke Sundvold; Mesel Isom, Martine; Keshari, Pankaj; Rognes, Torbjørn; Landsverk, Ole J. B.; Bos, Steffan Daniel; Harbo, Hanne Flinstad et al.. 2021, Scandinavian Journal of Immunology. https://doi.org/10.1111/sji.13050 (Academic article)
Individualized VDJ recombination predisposes the available Ig sequence space. Slabodkin, Andrei; Chernigovskaia, Maria; Mikocziova, Ivana; Akbar, Rahmad; Scheffer, Lonneke; Pavlović, Milena; Bashour, Habib; Snapkov, Igor; Mehta, Brij Bhushan; Weber, Cédric R. et al.. 2021, Genome Research. https://doi.org/10.1101/gr.275373.121 (Academic article)
Individualized VDJ recombination predisposes the available Ig sequence space. Slabodkin, Andrei; Chernigovskaia, Maria; Mikocziova, Ivana; Akbar, Rahmad; Scheffer, Lonneke; Pavlović, Milena; Bashour, Habib; Snapkov, Igor; Mehta, Brij Bhushan; Weber, Cédric R. et al.. 2021, Genome Research. https://doi.org/10.1101/gr.275373.121 (Academic article)
miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer. Ben-Elazar, Shay; Aure, Miriam Ragle; Jonsdottir, Kristin; Leivonen, Suvi-Katri; Kristensen, Vessela N.; Janssen, Emiel; Sahlberg, Kristine Kleivi; Lingjærde, Ole Christian & Yakhini, Zohar. 2021, PLoS Computational Biology. https://doi.org/10.1371/JOURNAL.PCBI.1008608 (Academic article)
miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer. Ben-Elazar, Shay; Aure, Miriam Ragle; Jonsdottir, Kristin; Leivonen, Suvi-Katri; Kristensen, Vessela N.; Janssen, Emiel; Sahlberg, Kristine Kleivi; Lingjærde, Ole Christian & Yakhini, Zohar. 2021, PLoS Computational Biology. https://doi.org/10.1371/JOURNAL.PCBI.1008608 (Academic article)
No difference in penetrance between truncating and missense/aberrant splicing pathogenic variants in mlh1 and msh2: A prospective lynch syndrome database study. Dominguez-Valentin, Mev; Plazzer, John-Paul; Sampson, Julian R.; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone; Bernstein, Inge; Capella, Gabriel; Balaguer, Francesc et al.. 2021, Journal of Clinical Medicine. https://doi.org/10.3390/jcm10132856 (Academic article)
No difference in penetrance between truncating and missense/aberrant splicing pathogenic variants in mlh1 and msh2: A prospective lynch syndrome database study. Dominguez-Valentin, Mev; Plazzer, John-Paul; Sampson, Julian R.; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone; Bernstein, Inge; Capella, Gabriel; Balaguer, Francesc et al.. 2021, Journal of Clinical Medicine. https://doi.org/10.3390/jcm10132856 (Academic article)
Permeation Rates of Oxygen through a Lipid Bilayer Using Replica Exchange Transition Interface Sampling. Riccardi, Enrico; Krämer, Andreas; van Erp, Titus Sebastiaan & Ghysels, An. 2021, Journal of Physical Chemistry B. https://doi.org/10.1021/acs.jpcb.0c09947 (Academic article)
Permeation Rates of Oxygen through a Lipid Bilayer Using Replica Exchange Transition Interface Sampling. Riccardi, Enrico; Krämer, Andreas; van Erp, Titus Sebastiaan & Ghysels, An. 2021, Journal of Physical Chemistry B. https://doi.org/10.1021/acs.jpcb.0c09947 (Academic article)
Probing the Putative Role of KATP Channels and Biological Variability in a Mathematical Model of Chondrocyte Electrophysiology. Fischer-Holzhausen, Sophie; Yamamoto, Kei; Fjeldstad, Maria Perona & Maleckar, Mary Margot Catherine. 2021, Bioelectricity. https://doi.org/10.1089/bioe.2021.0034 (Academic article)
Probing the Putative Role of KATP Channels and Biological Variability in a Mathematical Model of Chondrocyte Electrophysiology. Fischer-Holzhausen, Sophie; Yamamoto, Kei; Fjeldstad, Maria Perona & Maleckar, Mary Margot Catherine. 2021, Bioelectricity. https://doi.org/10.1089/bioe.2021.0034 (Academic article)
Protein signature predicts response to neoadjuvant treatment with chemotherapy and bevacizumab in HER2-negative breast cancers. Haugen, Mads Haugland; Lingjærde, Ole Christian; Hedenfalk, Ingrid; Garred, Øystein; Borgen, Elin; Loman, Niklas; Hatschek, Thomas; Børresen-Dale, Anne-Lise; Naume, Bjørn; Mills, Gordon B. et al.. 2021, JCO Precision Oncology (JCO PO). https://doi.org/10.1200/PO.20.00086 (Academic article)
Protein signature predicts response to neoadjuvant treatment with chemotherapy and bevacizumab in HER2-negative breast cancers. Haugen, Mads Haugland; Lingjærde, Ole Christian; Hedenfalk, Ingrid; Garred, Øystein; Borgen, Elin; Loman, Niklas; Hatschek, Thomas; Børresen-Dale, Anne-Lise; Naume, Bjørn; Mills, Gordon B. et al.. 2021, JCO Precision Oncology (JCO PO). https://doi.org/10.1200/PO.20.00086 (Academic article)
Recommendations for the FAIRification of genomic track metadata. Gundersen, Sveinung; Boddu, Sanjay; Capella-Gutierrez, Salvador; Drabløs, Finn; Fernández, José M.; Kompova, Radmila; Taylor, Kieron; Titov, Dmytro; Zerbino, Daniel & Hovig, Eivind. 2021, F1000 Research. https://doi.org/10.12688/f1000research.28449.1 (Academic article)
Recommendations for the FAIRification of genomic track metadata. Gundersen, Sveinung; Boddu, Sanjay; Capella-Gutierrez, Salvador; Drabløs, Finn; Fernández, José M.; Kompova, Radmila; Taylor, Kieron; Titov, Dmytro; Zerbino, Daniel & Hovig, Eivind. 2021, F1000 Research. https://doi.org/10.12688/f1000research.28449.1 (Academic article)
Reduced metagenome sequencing for strain-resolution taxonomic profiles. Snipen, Lars; Angell, Inga-Leena; Rognes, Torbjørn & Rudi, Knut. 2021, Microbiome. https://doi.org/10.1186/s40168-021-01019-8 (Academic article)
Reduced metagenome sequencing for strain-resolution taxonomic profiles. Snipen, Lars; Angell, Inga-Leena; Rognes, Torbjørn & Rudi, Knut. 2021, Microbiome. https://doi.org/10.1186/s40168-021-01019-8 (Academic article)
Sample preparation approach influences pam50 risk of recurrence score in early breast cancer. Lien, Tonje Gulbrandsen; Ohnstad, Hege Oma; Lingjærde, Ole Christian; Vallon-Christersson, Johan; Aaserud, Marit; Sveli, My Anh Tu; Borg, Åke; Garred, Øystein; Borgen, Elin; Naume, Bjørn et al.. 2021, Cancers. https://doi.org/10.3390/cancers13236118 (Academic article)
Sample preparation approach influences pam50 risk of recurrence score in early breast cancer. Lien, Tonje Gulbrandsen; Ohnstad, Hege Oma; Lingjærde, Ole Christian; Vallon-Christersson, Johan; Aaserud, Marit; Sveli, My Anh Tu; Borg, Åke; Garred, Øystein; Borgen, Elin; Naume, Bjørn et al.. 2021, Cancers. https://doi.org/10.3390/cancers13236118 (Academic article)
Swarm v3: towards tera-scale amplicon clustering. Mahé, Frédéric; Czech, Lucas; Stamatakis, Alexandros; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah & Rognes, Torbjørn. 2021, Bioinformatics. https://doi.org/10.1093/bioinformatics/btab493 (Academic article)
Swarm v3: towards tera-scale amplicon clustering. Mahé, Frédéric; Czech, Lucas; Stamatakis, Alexandros; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah & Rognes, Torbjørn. 2021, Bioinformatics. https://doi.org/10.1093/bioinformatics/btab493 (Academic article)
T cell receptor repertoire as a potential diagnostic marker for celiac disease. Yao, Ying; Zia, Asima; Neumann, Ralf Stefan; Pavlović, Milena; Balaban, Gabriel; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Qiao, Shuo Wang. 2021, Clinical Immunology. https://doi.org/10.1016/j.clim.2020.108621 (Academic article)
T cell receptor repertoire as a potential diagnostic marker for celiac disease. Yao, Ying; Zia, Asima; Neumann, Ralf Stefan; Pavlović, Milena; Balaban, Gabriel; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Qiao, Shuo Wang. 2021, Clinical Immunology. https://doi.org/10.1016/j.clim.2020.108621 (Academic article)
Telomerase as a Target for Therapeutic Cancer Vaccines and Considerations for Optimizing Their Clinical Potential. Ellingsen, Espen Basmo; Mangsbo, Sara; Hovig, Eivind & Gaudernack, Gustav. 2021, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.682492 (Academic literature review)
Telomerase as a Target for Therapeutic Cancer Vaccines and Considerations for Optimizing Their Clinical Potential. Ellingsen, Espen Basmo; Mangsbo, Sara; Hovig, Eivind & Gaudernack, Gustav. 2021, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.682492 (Academic literature review)
Ten simple rules for quick and dirty scientific programming. Balaban, Gabriel; Grytten, Ivar; Rand, Knut Dagestad; Scheffer, Lonneke & Sandve, Geir Kjetil. 2021, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1008549 (Editoral)
Ten simple rules for quick and dirty scientific programming. Balaban, Gabriel; Grytten, Ivar; Rand, Knut Dagestad; Scheffer, Lonneke & Sandve, Geir Kjetil. 2021, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1008549 (Editoral)
The CRCbiome study: a large prospective cohort study examining the role of lifestyle and the gut microbiome in colorectal cancer screening participants. Kværner, Ane Sørlie; Birkeland, Einar Elvbakken; Bucher-Johannessen, Cecilie; Vinberg, Elina; Nordby, Jan Inge; Kangas, Harri; Bemanian, Vahid; Ellonen, Pekka; Botteri, Edoardo; Natvig, Erik et al.. 2021, BMC Cancer. https://doi.org/10.1186/s12885-021-08640-8 (Academic article)
The CRCbiome study: a large prospective cohort study examining the role of lifestyle and the gut microbiome in colorectal cancer screening participants. Kværner, Ane Sørlie; Birkeland, Einar Elvbakken; Bucher-Johannessen, Cecilie; Vinberg, Elina; Nordby, Jan Inge; Kangas, Harri; Bemanian, Vahid; Ellonen, Pekka; Botteri, Edoardo; Natvig, Erik et al.. 2021, BMC Cancer. https://doi.org/10.1186/s12885-021-08640-8 (Academic article)
The Future of Blood Testing Is the Immunome. Arnaout, Ramy A.; Luning Prak, Eline T.; Schwab, Nicholas; Rubelt, Florian; Greiff, Victor; Pavlović, Milena; Sandve, Geir Kjetil Ferkingstad; Snapkov, Igor; Arora, Rohit; Bashford-Rogers, Rachael et al.. 2021, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.626793 (Academic literature review)
The Future of Blood Testing Is the Immunome. Arnaout, Ramy A.; Luning Prak, Eline T.; Schwab, Nicholas; Rubelt, Florian; Greiff, Victor; Pavlović, Milena; Sandve, Geir Kjetil Ferkingstad; Snapkov, Igor; Arora, Rohit; Bashford-Rogers, Rachael et al.. 2021, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.626793 (Academic literature review)
The genetic structure of Norway. Mattingsdal, Morten; Ebenesersdóttir, Sigríður Sunna; Moore, Kristjan H. S.; Andreassen, Ole Andreas; Hansen, Thomas F.; Werge, Thomas; Kockum, Ingrid; Olsson, Tomas; Alfredsson, Lars; Helgason, Agnar et al.. 2021, European Journal of Human Genetics. https://doi.org/10.1038/s41431-021-00899-6 (Academic article)
The genetic structure of Norway. Mattingsdal, Morten; Ebenesersdóttir, Sigríður Sunna; Moore, Kristjan H. S.; Andreassen, Ole Andreas; Hansen, Thomas F.; Werge, Thomas; Kockum, Ingrid; Olsson, Tomas; Alfredsson, Lars; Helgason, Agnar et al.. 2021, European Journal of Human Genetics. https://doi.org/10.1038/s41431-021-00899-6 (Academic article)
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Kanduri, Chakravarthi; Kompova, Radmila; Vazov, Nikolay Aleksandrov; Waagan, Knut; Bernal, Fabian Leonardo Martinez; Costa, Alexandre Almeida; Corrie, Brian et al.. 2021, Nature Machine Intelligence. https://doi.org/10.1038/s42256-021-00413-z (Academic article)
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Pavlović, Milena; Scheffer, Lonneke; Motwani, Keshav; Kanduri, Chakravarthi; Kompova, Radmila; Vazov, Nikolay Aleksandrov; Waagan, Knut; Bernal, Fabian Leonardo Martinez; Costa, Alexandre Almeida; Corrie, Brian et al.. 2021, Nature Machine Intelligence. https://doi.org/10.1038/s42256-021-00413-z (Academic article)
The quandary of dna-based treatment assessment in de novo metastatic prostate cancer in the era of precision oncology. Nakken, Sigve; Lilleby, Wolfgang; Switlyk, Marta Daniela; Knudsen, Karen E.; Lilleby, Oscar; Zhao, Sen; Kaveh, Fatemeh; Ekstrøm, Per O.; Urbanucci, Alfonso & Hovig, Eivind. 2021, Journal of Personalized Medicine. https://doi.org/10.3390/jpm11050330 (Academic article)
The quandary of dna-based treatment assessment in de novo metastatic prostate cancer in the era of precision oncology. Nakken, Sigve; Lilleby, Wolfgang; Switlyk, Marta Daniela; Knudsen, Karen E.; Lilleby, Oscar; Zhao, Sen; Kaveh, Fatemeh; Ekstrøm, Per O.; Urbanucci, Alfonso & Hovig, Eivind. 2021, Journal of Personalized Medicine. https://doi.org/10.3390/jpm11050330 (Academic article)
Uptake of hysterectomy and bilateral salpingo-oophorectomy in carriers of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report. Seppälä, Toni T.; Dominguez-Valentin, Mev; Crosbie, Emma J.; Engel, Christoph; Aretz, Stefan; Macrae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Hovig, Eivind et al.. 2021, European Journal of Cancer. https://doi.org/10.1016/j.ejca.2021.02.022 (Academic article)
Uptake of hysterectomy and bilateral salpingo-oophorectomy in carriers of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report. Seppälä, Toni T.; Dominguez-Valentin, Mev; Crosbie, Emma J.; Engel, Christoph; Aretz, Stefan; Macrae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Hovig, Eivind et al.. 2021, European Journal of Cancer. https://doi.org/10.1016/j.ejca.2021.02.022 (Academic article)
Whole genome copy number analyses reveal a highly aberrant genome in TP53 mutant lung adenocarcinoma tumors. Bjaanæs, Maria Moksnes; Nilsen, Gro; Halvorsen, Ann Rita; Russnes, Hege Elisabeth Giercksky; Solberg, Steinar; Jørgensen, Lars; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2021, BMC Cancer. https://doi.org/10.1186/s12885-021-08811-7 (Academic article)
Whole genome copy number analyses reveal a highly aberrant genome in TP53 mutant lung adenocarcinoma tumors. Bjaanæs, Maria Moksnes; Nilsen, Gro; Halvorsen, Ann Rita; Russnes, Hege Elisabeth Giercksky; Solberg, Steinar; Jørgensen, Lars; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2021, BMC Cancer. https://doi.org/10.1186/s12885-021-08811-7 (Academic article)
2020
3D Electrophysiological Modeling of Interstitial Fibrosis Networks and Their Role in Ventricular Arrhythmias in Non-Ischemic Cardiomyopathy. Balaban, Gabriel; Costa, Caroline Mendonca; Porter, Bradley; Halliday, Brian; Rinaldi, Christopher A.; Prasad, Sanjay K.; Plank, Gernot; Ismail, Tevfik & Bishop, Martin. 2020, IEEE Transactions on Biomedical Engineering. https://doi.org/10.1109/TBME.2020.2976924 (Academic article)3D Electrophysiological Modeling of Interstitial Fibrosis Networks and Their Role in Ventricular Arrhythmias in Non-Ischemic Cardiomyopathy. Balaban, Gabriel; Costa, Caroline Mendonca; Porter, Bradley; Halliday, Brian; Rinaldi, Christopher A.; Prasad, Sanjay K.; Plank, Gernot; Ismail, Tevfik & Bishop, Martin. 2020, IEEE Transactions on Biomedical Engineering. https://doi.org/10.1109/TBME.2020.2976924 (Academic article)
A computational investigation into rate-dependant vectorcardiogram changes due to specific fibrosis patterns in non-ischæmic dilated cardiomyopathy. Gemmell, Philip M.; Gillette, Karli; Balaban, Gabriel; Rajani, Ronak; Vigmond, Edward J.; Plank, Gernot & Bishop, Martin. 2020, Computers in Biology and Medicine. https://doi.org/10.1016/j.compbiomed.2020.103895 (Academic article)
A computational investigation into rate-dependant vectorcardiogram changes due to specific fibrosis patterns in non-ischæmic dilated cardiomyopathy. Gemmell, Philip M.; Gillette, Karli; Balaban, Gabriel; Rajani, Ronak; Vigmond, Edward J.; Plank, Gernot & Bishop, Martin. 2020, Computers in Biology and Medicine. https://doi.org/10.1016/j.compbiomed.2020.103895 (Academic article)
Accuracy and efficiency of germline variant calling pipelines for human genome data. Zhao, Sen; Agafonov, Oleg; Azab, Abdulrahman; Stokowy, Tomasz & Hovig, Eivind. 2020, Scientific Reports. https://doi.org/10.1038/s41598-020-77218-4 (Academic article)
Accuracy and efficiency of germline variant calling pipelines for human genome data. Zhao, Sen; Agafonov, Oleg; Azab, Abdulrahman; Stokowy, Tomasz & Hovig, Eivind. 2020, Scientific Reports. https://doi.org/10.1038/s41598-020-77218-4 (Academic article)
Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods. Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan & Sandve, Geir Kjetil. 2020, BMC Genomics. https://doi.org/10.1186/s12864-020-6685-y (Academic article)
Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods. Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan & Sandve, Geir Kjetil. 2020, BMC Genomics. https://doi.org/10.1186/s12864-020-6685-y (Academic article)
Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas (Nature Genetics, (2014), 46, 9, (964-972), 10.1038/ng.3065). Molyneux, Sam D.; Waterhouse, Paul D.; Shelton, Dawne; Shao, Yang W.; Watling, Christopher M.; Tang, Qing-Lian; Harris, Isaac S.; Dickson, Brendan C.; Tharmapalan, Pirashaanthy; Sandve, Geir Kjetil Ferkingstad et al.. 2020, Nature Genetics. https://doi.org/10.1038/s41588-020-0589-2 (Errata)
Author Correction: Human somatic cell mutagenesis creates genetically tractable sarcomas (Nature Genetics, (2014), 46, 9, (964-972), 10.1038/ng.3065). Molyneux, Sam D.; Waterhouse, Paul D.; Shelton, Dawne; Shao, Yang W.; Watling, Christopher M.; Tang, Qing-Lian; Harris, Isaac S.; Dickson, Brendan C.; Tharmapalan, Pirashaanthy; Sandve, Geir Kjetil Ferkingstad et al.. 2020, Nature Genetics. https://doi.org/10.1038/s41588-020-0589-2 (Errata)
B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2. du Pré, Fleur; Blazevski, Jana; Dewan, Alisa Elinsdatter; Stamnæs, Jorunn; Kanduri, Srinivasa Kalyana Chakravarthi; Sandve, Geir Kjetil; Johannesen, Marie Kongshaug; Lindstad, Christian Borgen; Hnida, Kathrin; Fugger, Lars et al.. 2020, Journal of Experimental Medicine (JEM). https://doi.org/10.1084/jem.20190860 (Academic article)
B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2. du Pré, Fleur; Blazevski, Jana; Dewan, Alisa Elinsdatter; Stamnæs, Jorunn; Kanduri, Srinivasa Kalyana Chakravarthi; Sandve, Geir Kjetil; Johannesen, Marie Kongshaug; Lindstad, Christian Borgen; Hnida, Kathrin; Fugger, Lars et al.. 2020, Journal of Experimental Medicine (JEM). https://doi.org/10.1084/jem.20190860 (Academic article)
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits. Dai, Kael; Gratiy, Sergey L.; Billeh, Yazan; Xu, Richard; Cai, Binghuang; Cain, Nicholas; Rimehaug, Atle Eskeland; Stasik, Alexander Johannes; Einevoll, Gaute; Mihalas, Stefan et al.. 2020, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1008386 (Academic article)
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits. Dai, Kael; Gratiy, Sergey L.; Billeh, Yazan; Xu, Richard; Cai, Binghuang; Cain, Nicholas; Rimehaug, Atle Eskeland; Stasik, Alexander Johannes; Einevoll, Gaute; Mihalas, Stefan et al.. 2020, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1008386 (Academic article)
Breast cancer survival in Nordic BRCA2 mutation carriers—unconventional association with oestrogen receptor status. Olafsdottir, Elinborg J.; Borg, Åke; Jensen, Maj-Britt; Gerdes, Anne-Marie; Johansson, Anna L. V.; Barkardottir, Rosa B.; Johannsson, Oskar; Ejlertsen, Bent; Sønderstrup, Ida Marie Heeholm; Hovig, Eivind et al.. 2020, British Journal of Cancer. https://doi.org/10.1038/s41416-020-01056-4 (Academic article)
Breast cancer survival in Nordic BRCA2 mutation carriers—unconventional association with oestrogen receptor status. Olafsdottir, Elinborg J.; Borg, Åke; Jensen, Maj-Britt; Gerdes, Anne-Marie; Johansson, Anna L. V.; Barkardottir, Rosa B.; Johannsson, Oskar; Ejlertsen, Bent; Sønderstrup, Ida Marie Heeholm; Hovig, Eivind et al.. 2020, British Journal of Cancer. https://doi.org/10.1038/s41416-020-01056-4 (Academic article)
Computational approaches in cancer multidrug resistance research: Identification of potential biomarkers, drug targets and drug-target interactions. Tolios, Alexander; De Las Rivas, Javier; Hovig, Eivind; Trouillas, Patrick; Scorilas, Andreas & Mohr, Thomas. 2020, Drug resistance updates. https://doi.org/10.1016/j.drup.2019.100662 (Academic article)
Computational approaches in cancer multidrug resistance research: Identification of potential biomarkers, drug targets and drug-target interactions. Tolios, Alexander; De Las Rivas, Javier; Hovig, Eivind; Trouillas, Patrick; Scorilas, Andreas & Mohr, Thomas. 2020, Drug resistance updates. https://doi.org/10.1016/j.drup.2019.100662 (Academic article)
Correction: Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database (Genetics in Medicine, (2020), 22, 1, (15-25), 10.1038/s41436-019-0596-9). Dominguez-Valentin, Mev; Sampson, Julian R.; Seppälä, Toni T.; ten Broeke, Sanne W.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2020, Genetics in Medicine. https://doi.org/10.1038/s41436-020-0892-4 (Errata)
Correction: Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database (Genetics in Medicine, (2020), 22, 1, (15-25), 10.1038/s41436-019-0596-9). Dominguez-Valentin, Mev; Sampson, Julian R.; Seppälä, Toni T.; ten Broeke, Sanne W.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2020, Genetics in Medicine. https://doi.org/10.1038/s41436-020-0892-4 (Errata)
Correction: Causes for frequent pathogenic brca1 variants include low penetrance in fertile ages, recurrent de-novo mutations and genetic drift (Cancers, (2019), 11, 132, 10.3390/cancers11020132). Møller, Pål; Dominguez-Valentin, Mev; Rødland, Einar Andreas & Hovig, Eivind. 2020, Cancers. https://doi.org/10.3390/cancers12020410 (Errata)
Correction: Causes for frequent pathogenic brca1 variants include low penetrance in fertile ages, recurrent de-novo mutations and genetic drift (Cancers, (2019), 11, 132, 10.3390/cancers11020132). Møller, Pål; Dominguez-Valentin, Mev; Rødland, Einar Andreas & Hovig, Eivind. 2020, Cancers. https://doi.org/10.3390/cancers12020410 (Errata)
DNA copy number motifs are strong and independent predictors of survival in breast cancer. Pladsen, Arne Valebjørg; Nilsen, Gro; Rueda, Oscar M.; Aure, Miriam Ragle; Borgan, Ørnulf; Liestøl, Knut; Vitelli, Valeria; Frigessi Di Rattalma, Arnoldo; Langerød, Anita; Mathelier, Anthony et al.. 2020, Communications Biology. https://doi.org/10.1038/s42003-020-0884-6 (Academic article)
DNA copy number motifs are strong and independent predictors of survival in breast cancer. Pladsen, Arne Valebjørg; Nilsen, Gro; Rueda, Oscar M.; Aure, Miriam Ragle; Borgan, Ørnulf; Liestøl, Knut; Vitelli, Valeria; Frigessi Di Rattalma, Arnoldo; Langerød, Anita; Mathelier, Anthony et al.. 2020, Communications Biology. https://doi.org/10.1038/s42003-020-0884-6 (Academic article)
Dysregulation of MITF Leads to Transformation in MC1R-Defective Melanocytes. Lavelle, Timothy J; Alver, Tine Norman; Heintz, Karen Marie; Wernhoff, Patrik; Nygaard, Vegard; Nakken, Sigve; Øy, Geir Frode; Bøe, Sigurd; Urbanucci, Alfonso & Hovig, Eivind. 2020, Cancers. https://doi.org/10.3390/cancers12071719 (Academic article)
Dysregulation of MITF Leads to Transformation in MC1R-Defective Melanocytes. Lavelle, Timothy J; Alver, Tine Norman; Heintz, Karen Marie; Wernhoff, Patrik; Nygaard, Vegard; Nakken, Sigve; Øy, Geir Frode; Bøe, Sigurd; Urbanucci, Alfonso & Hovig, Eivind. 2020, Cancers. https://doi.org/10.3390/cancers12071719 (Academic article)
Erratum: MirGeneDB 2.0: The metazoan microRNA complement (Nucleic Acids Research (2019) DOI: 10.1093/nar/gkz885). Fromm, Bastian; Domanska, Diana; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind et al.. 2020, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkz1016 (Errata)
Erratum: MirGeneDB 2.0: The metazoan microRNA complement (Nucleic Acids Research (2019) DOI: 10.1093/nar/gkz885). Fromm, Bastian; Domanska, Diana; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind et al.. 2020, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkz1016 (Errata)
Frequent copy number gains of SLC2A3 and ETV1 in testicular embryonal carcinomas. Hoff, Andreas Midbøe; Kraggerud, Sigrid M.; Alagaratnam, Sharmini; Berg, Kaja Christine Graue; Johannessen, Bjarne; Høland, Maren; Nilsen, Gro; Lingjærde, Ole Christian; Andrews, Peter W.; Lothe, Ragnhild A et al.. 2020, Endocrine-Related Cancer. https://doi.org/10.1530/ERC-20-0064 (Academic article)
Frequent copy number gains of SLC2A3 and ETV1 in testicular embryonal carcinomas. Hoff, Andreas Midbøe; Kraggerud, Sigrid M.; Alagaratnam, Sharmini; Berg, Kaja Christine Graue; Johannessen, Bjarne; Høland, Maren; Nilsen, Gro; Lingjærde, Ole Christian; Andrews, Peter W.; Lothe, Ragnhild A et al.. 2020, Endocrine-Related Cancer. https://doi.org/10.1530/ERC-20-0064 (Academic article)
Germline HOXB13 mutations p.G84E and p.R217C do not confer an increased breast cancer risk. Liu, Jingjing; van der Smissen, Wendy J. C. Prager; Collee, Margriet J.; Bolla, Manjeet K.; Wang, Qin; Kristensen, Vessela N.; Sahlberg, Kristine Kleivi; Børresen-Dale, Anne-Lise; Ottestad, Lars; Kåresen, Rolf et al.. 2020, Scientific Reports. https://doi.org/10.1038/s41598-020-65665-y (Academic article)
Germline HOXB13 mutations p.G84E and p.R217C do not confer an increased breast cancer risk. Liu, Jingjing; van der Smissen, Wendy J. C. Prager; Collee, Margriet J.; Bolla, Manjeet K.; Wang, Qin; Kristensen, Vessela N.; Sahlberg, Kristine Kleivi; Børresen-Dale, Anne-Lise; Ottestad, Lars; Kåresen, Rolf et al.. 2020, Scientific Reports. https://doi.org/10.1038/s41598-020-65665-y (Academic article)
HMST-Seq-Analyzer: A new python tool for differential methylation and hydroxymethylation analysis in various DNA methylation sequencing data. Farooq, Amna; Grønmyr, Sindre; Omer, Ali Avan; Rognes, Torbjørn; Scheffler, Katja; Bjørås, Magnar & Wang, Junbai. 2020, Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2020.09.038 (Academic article)
HMST-Seq-Analyzer: A new python tool for differential methylation and hydroxymethylation analysis in various DNA methylation sequencing data. Farooq, Amna; Grønmyr, Sindre; Omer, Ali Avan; Rognes, Torbjørn; Scheffler, Katja; Bjørås, Magnar & Wang, Junbai. 2020, Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2020.09.038 (Academic article)
ICON: A randomized phase IIb study evaluating immunogenic chemotherapy combined with ipilimumab and nivolumab in patients with metastatic hormone receptor positive breast cancer. Kyte, Jon A; Andresen, Nikolai Kragøe; Russnes, Hege Elisabeth Giercksky; Fretland, Signe Øien; Falk, Ragnhild Sørum; Lingjærde, Ole Christian & Naume, Bjørn. 2020, Journal of Translational Medicine. https://doi.org/10.1186/s12967-020-02421-w (Academic article)
ICON: A randomized phase IIb study evaluating immunogenic chemotherapy combined with ipilimumab and nivolumab in patients with metastatic hormone receptor positive breast cancer. Kyte, Jon A; Andresen, Nikolai Kragøe; Russnes, Hege Elisabeth Giercksky; Fretland, Signe Øien; Falk, Ragnhild Sørum; Lingjærde, Ole Christian & Naume, Bjørn. 2020, Journal of Translational Medicine. https://doi.org/10.1186/s12967-020-02421-w (Academic article)
Immune phenotype of tumor microenvironment predicts response to bevacizumab in neoadjuvant treatment of ER-positive breast cancer. Gythfeldt, Hedda von der Lippe; Lien, Tonje Gulbrandsen; Tekpli, Xavier; Silwal-Pandit, Laxmi; Borgen, Elin; Garred, Øystein; Skjerven, Helle; Schlichting, Ellen; Lundgren, Steinar; Wist, Erik et al.. 2020, International Journal of Cancer. https://doi.org/10.1002/ijc.33108 (Academic article)
Immune phenotype of tumor microenvironment predicts response to bevacizumab in neoadjuvant treatment of ER-positive breast cancer. Gythfeldt, Hedda von der Lippe; Lien, Tonje Gulbrandsen; Tekpli, Xavier; Silwal-Pandit, Laxmi; Borgen, Elin; Garred, Øystein; Skjerven, Helle; Schlichting, Ellen; Lundgren, Steinar; Wist, Erik et al.. 2020, International Journal of Cancer. https://doi.org/10.1002/ijc.33108 (Academic article)
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking. Weber, Cédric R.; Akbar, Rahmad; Yermanos, Alexander; Pavlovic, Milena; Snapkov, Igor; Sandve, Geir Kjetil; Reddy, Sai T. & Greiff, Victor. 2020, Bioinformatics. https://doi.org/10.1093/bioinformatics/btaa158 (Academic article)
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking. Weber, Cédric R.; Akbar, Rahmad; Yermanos, Alexander; Pavlovic, Milena; Snapkov, Igor; Sandve, Geir Kjetil; Reddy, Sai T. & Greiff, Victor. 2020, Bioinformatics. https://doi.org/10.1093/bioinformatics/btaa158 (Academic article)
Loss of Snord116 impacts lateral hypothalamus, sleep, and food-related behaviors. Pace, Marta; Falappa, Matteo; Freschi, Andrea; Balzani, Edoardo; Berteotti, Chiara; Martire, Viviana Lo; Kaveh, Fatemeh; Hovig, Eivind; Zoccoli, Giovanna; Amici, Roberto et al.. 2020, JCI Insight. https://doi.org/10.1172/jci.insight.137495 (Academic article)
Loss of Snord116 impacts lateral hypothalamus, sleep, and food-related behaviors. Pace, Marta; Falappa, Matteo; Freschi, Andrea; Balzani, Edoardo; Berteotti, Chiara; Martire, Viviana Lo; Kaveh, Fatemeh; Hovig, Eivind; Zoccoli, Giovanna; Amici, Roberto et al.. 2020, JCI Insight. https://doi.org/10.1172/jci.insight.137495 (Academic article)
LXRα Regulates ChREBPα Transactivity in a Target Gene-Specific Manner through an Agonist-Modulated LBD-LID Interaction. Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie; Lucas, Christin; Vekterud, Kristin; Södling, Helen; Matthews, Jason; Lemma, Roza Berhanu; Gabrielsen, Odd Stokke et al.. 2020, Cells. https://doi.org/10.3390/cells9051214 (Academic article)
LXRα Regulates ChREBPα Transactivity in a Target Gene-Specific Manner through an Agonist-Modulated LBD-LID Interaction. Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie; Lucas, Christin; Vekterud, Kristin; Södling, Helen; Matthews, Jason; Lemma, Roza Berhanu; Gabrielsen, Odd Stokke et al.. 2020, Cells. https://doi.org/10.3390/cells9051214 (Academic article)
Molecularly matched therapy in the context of sensitivity, resistance, and safety; patient outcomes in end-stage cancer?the MetAction study. Ree, Anne Hansen; Nygaard, Vigdis; Pedersen, Kjetil Boye; Heinrich, Daniel; Dueland, Svein; Bergheim, Inger Riise; Johansen, Christin; Beiske, Klaus; Negård, Anne; Lund-Iversen, Marius et al.. 2020, Acta Oncologica. https://doi.org/10.1080/0284186X.2020.1742377 (Academic article)
Molecularly matched therapy in the context of sensitivity, resistance, and safety; patient outcomes in end-stage cancer?the MetAction study. Ree, Anne Hansen; Nygaard, Vigdis; Pedersen, Kjetil Boye; Heinrich, Daniel; Dueland, Svein; Bergheim, Inger Riise; Johansen, Christin; Beiske, Klaus; Negård, Anne; Lund-Iversen, Marius et al.. 2020, Acta Oncologica. https://doi.org/10.1080/0284186X.2020.1742377 (Academic article)
Mutational dynamics and immune evasion in diffuse large B-cell lymphoma explored in a relapse-enriched patient series. Wise, Jillian; Nakken, Sigve; Steen, Chloe Beate; Vodak, Daniel; Trøen, Gunhild; Johannessen, Bjarne; Lingjærde, Ole Christian; Hilden, Vera Irene; Blaker, Yngvild Nuvin; Bai, Baoyan et al.. 2020, Blood Advances. https://doi.org/10.1182/bloodadvances.2019001325 (Academic article)
Mutational dynamics and immune evasion in diffuse large B-cell lymphoma explored in a relapse-enriched patient series. Wise, Jillian; Nakken, Sigve; Steen, Chloe Beate; Vodak, Daniel; Trøen, Gunhild; Johannessen, Bjarne; Lingjærde, Ole Christian; Hilden, Vera Irene; Blaker, Yngvild Nuvin; Bai, Baoyan et al.. 2020, Blood Advances. https://doi.org/10.1182/bloodadvances.2019001325 (Academic article)
NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads. Khelik, Ksenia; Sandve, Geir Kjetil; Nederbragt, Alexander Johan & Rognes, Torbjørn. 2020, BMC Bioinformatics. https://doi.org/10.1186/s12859-020-3414-0 (Academic article)
NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads. Khelik, Ksenia; Sandve, Geir Kjetil; Nederbragt, Alexander Johan & Rognes, Torbjørn. 2020, BMC Bioinformatics. https://doi.org/10.1186/s12859-020-3414-0 (Academic article)
Pan-cancer analysis of whole genomes. ICGC/TCGA Pan-Cancer Analysis, of Whole Genomes Consortium; Campbell, Peter J.; Getz, Gad; Korbel, Jan O.; Stuart, Joshua M.; Jennings, Jennifer L.; Aure, Miriam Ragle; Langerød, Anita; Børresen-Dale, Anne-Lise; Garred, Øystein et al.. 2020, Nature. https://doi.org/10.1038/s41586-020-1969-6 (Academic article)
Pan-cancer analysis of whole genomes. ICGC/TCGA Pan-Cancer Analysis, of Whole Genomes Consortium; Campbell, Peter J.; Getz, Gad; Korbel, Jan O.; Stuart, Joshua M.; Jennings, Jennifer L.; Aure, Miriam Ragle; Langerød, Anita; Børresen-Dale, Anne-Lise; Garred, Øystein et al.. 2020, Nature. https://doi.org/10.1038/s41586-020-1969-6 (Academic article)
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Bailey, Matthew H.; Meyerson, William U.; Dursi, L. Jonathan; Wang, Liang-Bo; Dong, Guanlan; Aure, Miriam Ragle; Børresen-Dale, Anne-Lise; Langerød, Anita; Bjerkehagen, Bodil; Garred, Øystein et al.. 2020, Nature Communications. https://doi.org/10.1038/s41467-020-18151-y (Academic article)
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Bailey, Matthew H.; Meyerson, William U.; Dursi, L. Jonathan; Wang, Liang-Bo; Dong, Guanlan; Aure, Miriam Ragle; Børresen-Dale, Anne-Lise; Langerød, Anita; Bjerkehagen, Bodil; Garred, Øystein et al.. 2020, Nature Communications. https://doi.org/10.1038/s41467-020-18151-y (Academic article)
Risk-Reducing Gynecological Surgery in Lynch Syndrome: Results of an International Survey from the Prospective Lynch Syndrome Database. Dominguez-Valentin, Mev; Seppälä, Toni T.; Engel, Christoph; Aretz, Stefan; Macrae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Hovig, Eivind; Nielsen, Maartje et al.. 2020, Journal of Clinical Medicine. https://doi.org/10.3390/jcm9072290 (Academic article)
Risk-Reducing Gynecological Surgery in Lynch Syndrome: Results of an International Survey from the Prospective Lynch Syndrome Database. Dominguez-Valentin, Mev; Seppälä, Toni T.; Engel, Christoph; Aretz, Stefan; Macrae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Hovig, Eivind; Nielsen, Maartje et al.. 2020, Journal of Clinical Medicine. https://doi.org/10.3390/jcm9072290 (Academic article)
Risk-reducing hysterectomy and bilateral salpingo-oophorectomy in female heterozygotes of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report. Dominguez-Valentin, Mev; Crosbie, Emma J.; Engel, Christoph; Aretz, Stefan; MacRae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Nakken, Sigve; Hovig, Eivind et al.. 2020, Genetics in Medicine. https://doi.org/10.1038/s41436-020-01029-1 (Academic article)
Risk-reducing hysterectomy and bilateral salpingo-oophorectomy in female heterozygotes of pathogenic mismatch repair variants: a Prospective Lynch Syndrome Database report. Dominguez-Valentin, Mev; Crosbie, Emma J.; Engel, Christoph; Aretz, Stefan; MacRae, Finlay; Winship, Ingrid; Capella, Gabriel; Thomas, Huw; Nakken, Sigve; Hovig, Eivind et al.. 2020, Genetics in Medicine. https://doi.org/10.1038/s41436-020-01029-1 (Academic article)
Sex differences in oncogenic mutational processes. Li, Constance H.; Prokopec, Stephenie D.; Sun, Ren X.; Yousif, Fouad; Schmitz, Nathaniel; Aure, Miriam Ragle; Børresen-Dale, Anne-Lise; Langerød, Anita; Bjerkehagen, Bodil; Garred, Øystein et al.. 2020, Nature Communications. https://doi.org/10.1038/s41467-020-17359-2 (Academic article)
Sex differences in oncogenic mutational processes. Li, Constance H.; Prokopec, Stephenie D.; Sun, Ren X.; Yousif, Fouad; Schmitz, Nathaniel; Aure, Miriam Ragle; Børresen-Dale, Anne-Lise; Langerød, Anita; Bjerkehagen, Bodil; Garred, Øystein et al.. 2020, Nature Communications. https://doi.org/10.1038/s41467-020-17359-2 (Academic article)
Tankyrase inhibition sensitizes melanoma to PD-1 immune checkpoint blockade in syngeneic mouse models. Waaler, Jo; Mygland, Line; Tveita, Anders Aune; Strand, Martin Frank; Solberg, Nina; Olsen, Petter Angell; Aizenshtadt, Aleksandra; Fauskanger, Marte; Lund, Kaja; Mahmuda, Shoshy (Brinch, Shoshy Alam) et al.. 2020, Communications Biology. https://doi.org/10.1038/s42003-020-0916-2 (Academic article)
Tankyrase inhibition sensitizes melanoma to PD-1 immune checkpoint blockade in syngeneic mouse models. Waaler, Jo; Mygland, Line; Tveita, Anders Aune; Strand, Martin Frank; Solberg, Nina; Olsen, Petter Angell; Aizenshtadt, Aleksandra; Fauskanger, Marte; Lund, Kaja; Mahmuda, Shoshy (Brinch, Shoshy Alam) et al.. 2020, Communications Biology. https://doi.org/10.1038/s42003-020-0916-2 (Academic article)
The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID. Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana Ewa; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan et al.. 2020, NAR Cancer. https://doi.org/10.1093/narcan/zcaa019 (Academic article)
The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID. Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana Ewa; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan et al.. 2020, NAR Cancer. https://doi.org/10.1093/narcan/zcaa019 (Academic article)
2019
A clinico-molecular predictor identifies follicular lymphoma patients at risk of early transformation after first-line immunotherapy. Steen, Chloe Beate; Leich, Ellen; Myklebust, June Helen; Lockmer, Sandra; Wise, Jillian; Wahlin, Björn Engelbrekt; Østenstad, Bjørn; Liestøl, Knut; Kimby, Eva; Rosenwald, Andreas et al.. 2019, Haematologica. https://doi.org/10.3324/haematol.2018.209080 (Academic article)A clinico-molecular predictor identifies follicular lymphoma patients at risk of early transformation after first-line immunotherapy. Steen, Chloe Beate; Leich, Ellen; Myklebust, June Helen; Lockmer, Sandra; Wise, Jillian; Wahlin, Björn Engelbrekt; Østenstad, Bjørn; Liestøl, Knut; Kimby, Eva; Rosenwald, Andreas et al.. 2019, Haematologica. https://doi.org/10.3324/haematol.2018.209080 (Academic article)
A map of direct TF–DNA interactions in the human genome. Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit & Mathelier, Anthony. 2019, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gky1210 (Academic article)
A map of direct TF–DNA interactions in the human genome. Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit & Mathelier, Anthony. 2019, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gky1210 (Academic article)
A snapshot of current genetic testing practice in Lynch syndrome: The results of a representative survey of 33 Latin American existing centres/registries. Della Valle, Adriana; Rossi, Benedito Mauro; Palmero, Edenir Inêz; Antelo, Marina; Vaccaro, Carlos Alberto; López-Köstner, Francisco; Alvarez, Karin; Cruz-Correa, Marcia; Bruno, Luisina Inés; Forones, Nora Manoukian et al.. 2019, European Journal of Cancer. https://doi.org/10.1016/j.ejca.2019.07.017 (Academic article)
A snapshot of current genetic testing practice in Lynch syndrome: The results of a representative survey of 33 Latin American existing centres/registries. Della Valle, Adriana; Rossi, Benedito Mauro; Palmero, Edenir Inêz; Antelo, Marina; Vaccaro, Carlos Alberto; López-Köstner, Francisco; Alvarez, Karin; Cruz-Correa, Marcia; Bruno, Luisina Inés; Forones, Nora Manoukian et al.. 2019, European Journal of Cancer. https://doi.org/10.1016/j.ejca.2019.07.017 (Academic article)
Alterations in schizophrenia-associated genes can lead to increased power in delta oscillations. Mäki-Marttunen, Tuomo; Krull, Florian; Bettella, Francesco; Hagen, Espen; Næss, Solveig; Ness, Torbjørn V; Moberget, Torgeir; Elvsåshagen, Torbjørn; Metzner, Christoph; Devor, Anna et al.. 2019, Cerebral Cortex. https://doi.org/10.1093/cercor/bhy291 (Academic article)
Alterations in schizophrenia-associated genes can lead to increased power in delta oscillations. Mäki-Marttunen, Tuomo; Krull, Florian; Bettella, Francesco; Hagen, Espen; Næss, Solveig; Ness, Torbjørn V; Moberget, Torgeir; Elvsåshagen, Torbjørn; Metzner, Christoph; Devor, Anna et al.. 2019, Cerebral Cortex. https://doi.org/10.1093/cercor/bhy291 (Academic article)
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires. Brown, Alex; Snapkov, Igor; Akbar, Rahmad; Pavlovic, Milena; Miho, Enkelejda; Sandve, Geir Kjetil & Greiff, Victor. 2019, Molecular Systems Design & Engineering. https://doi.org/10.1039/c9me00071b (Academic literature review)
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires. Brown, Alex; Snapkov, Igor; Akbar, Rahmad; Pavlovic, Milena; Miho, Enkelejda; Sandve, Geir Kjetil & Greiff, Victor. 2019, Molecular Systems Design & Engineering. https://doi.org/10.1039/c9me00071b (Academic literature review)
Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis. Salvatore, Stefania; Rand, Knut Dagestad; Grytten, Ivar; Ferkingstad, Egil; Domanska, Diana; Holden, Lars; Gheorghe, Marius; Mathelier, Anthony; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2019, Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbz083 (Academic article)
Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis. Salvatore, Stefania; Rand, Knut Dagestad; Grytten, Ivar; Ferkingstad, Egil; Domanska, Diana; Holden, Lars; Gheorghe, Marius; Mathelier, Anthony; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2019, Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbz083 (Academic article)
Biophysical Psychiatry—How Computational Neuroscience Can Help to Understand the Complex Mechanisms of Mental Disorders.. Mäki-Marttunen, Tuomo; Kaufmann, Tobias; Elvsåshagen, Torbjørn; Devor, Anna; Djurovic, Srdjan; Westlye, Lars Tjelta; Linne, Marja-Leena; Rietschel, Marcella; Schubert, Dirk; Borgwardt, Stefan et al.. 2019, Frontiers in Psychiatry. https://doi.org/10.3389/fpsyt.2019.00534 (Academic literature review)
Biophysical Psychiatry—How Computational Neuroscience Can Help to Understand the Complex Mechanisms of Mental Disorders.. Mäki-Marttunen, Tuomo; Kaufmann, Tobias; Elvsåshagen, Torbjørn; Devor, Anna; Djurovic, Srdjan; Westlye, Lars Tjelta; Linne, Marja-Leena; Rietschel, Marcella; Schubert, Dirk; Borgwardt, Stefan et al.. 2019, Frontiers in Psychiatry. https://doi.org/10.3389/fpsyt.2019.00534 (Academic literature review)
Breast cancer quantitative proteome and proteogenomic landscape. Johansson, Henrik J.; Socciarelli, Fabio; Vacanti, Nathaniel M.; Haugen, Mads Haugland; Zhu, Yafeng; Siavelis, Ioannis; Fernandez-Woodbridge, Alejandro; Aure, Miriam Ragle; Sennblad, Bengt; Vesterlund, Mattias et al.. 2019, Nature Communications. https://doi.org/10.1038/s41467-019-09018-y (Academic article)
Breast cancer quantitative proteome and proteogenomic landscape. Johansson, Henrik J.; Socciarelli, Fabio; Vacanti, Nathaniel M.; Haugen, Mads Haugland; Zhu, Yafeng; Siavelis, Ioannis; Fernandez-Woodbridge, Alejandro; Aure, Miriam Ragle; Sennblad, Bengt; Vesterlund, Mattias et al.. 2019, Nature Communications. https://doi.org/10.1038/s41467-019-09018-y (Academic article)
Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database. Dominguez-Valentin, Mev; Sampson, Julian R.; Seppälä, Toni T.; ten Broeke, Sanne W.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2019, Genetics in Medicine. https://doi.org/10.1038/s41436-019-0596-9 (Academic article)
Cancer risks by gene, age, and gender in 6350 carriers of pathogenic mismatch repair variants: findings from the Prospective Lynch Syndrome Database. Dominguez-Valentin, Mev; Sampson, Julian R.; Seppälä, Toni T.; ten Broeke, Sanne W.; Plazzer, John-Paul; Nakken, Sigve; Engel, Christoph; Aretz, Stefan; Jenkins, Mark A.; Sunde, Lone et al.. 2019, Genetics in Medicine. https://doi.org/10.1038/s41436-019-0596-9 (Academic article)
Carotid Atherosclerosis and Cognitive Function in a General Population Aged 63-65 Years: Data from the Akershus Cardiac Examination (ACE) 1950 Study. Ihle-Hansen, Håkon; Vigen, Thea; Berge, Trygve; Hagberg, Guri; Engedal, Knut; Rønning, Ole M.; Thommessen, Bente; Lyngbakken, Magnus; Nygård, Ståle; Røsjø, Helge et al.. 2019, Journal of Alzheimer's Disease. https://doi.org/10.3233/JAD-190327 (Academic article)
Carotid Atherosclerosis and Cognitive Function in a General Population Aged 63-65 Years: Data from the Akershus Cardiac Examination (ACE) 1950 Study. Ihle-Hansen, Håkon; Vigen, Thea; Berge, Trygve; Hagberg, Guri; Engedal, Knut; Rønning, Ole M.; Thommessen, Bente; Lyngbakken, Magnus; Nygård, Ståle; Røsjø, Helge et al.. 2019, Journal of Alzheimer's Disease. https://doi.org/10.3233/JAD-190327 (Academic article)
Causes for Frequent Pathogenic BRCA1 Variants Include Low Penetrance in Fertile Ages, Recurrent De-Novo Mutations and Genetic Drift. Møller, Pål; Dominguez-Valentin, Mev; Rødland, Einar Andreas & Hovig, Eivind. 2019, Cancers. https://doi.org/10.3390/cancers11020132 (Academic article)
Causes for Frequent Pathogenic BRCA1 Variants Include Low Penetrance in Fertile Ages, Recurrent De-Novo Mutations and Genetic Drift. Møller, Pål; Dominguez-Valentin, Mev; Rødland, Einar Andreas & Hovig, Eivind. 2019, Cancers. https://doi.org/10.3390/cancers11020132 (Academic article)
Circulating Secretoneurin Concentrations After Cardiac Surgery: Data From the FINNish Acute Kidney Injury Heart Study. Brynildsen, Jon; Petaja, Liisa; Myhre, Peder Langeland; Lyngbakken, Magnus; Nygård, Ståle; Stridsberg, Mats; Christensen, Geir Arve; Ottesen, Anett Hellebø; Pettilä, Ville; Omland, Torbjørn et al.. 2019, Critical Care Medicine. https://doi.org/10.1097/CCM.0000000000003670 (Academic article)
Circulating Secretoneurin Concentrations After Cardiac Surgery: Data From the FINNish Acute Kidney Injury Heart Study. Brynildsen, Jon; Petaja, Liisa; Myhre, Peder Langeland; Lyngbakken, Magnus; Nygård, Ståle; Stridsberg, Mats; Christensen, Geir Arve; Ottesen, Anett Hellebø; Pettilä, Ville; Omland, Torbjørn et al.. 2019, Critical Care Medicine. https://doi.org/10.1097/CCM.0000000000003670 (Academic article)
Colocalization analyses of genomic elements: approaches, recommendations and challenges. Kanduri, Srinivasa Kalyana Chakravarthi; Bock, Christoph; Gundersen, Sveinung; Hovig, Eivind & Sandve, Geir Kjetil. 2019, Bioinformatics. https://doi.org/10.1093/bioinformatics/bty835 (Academic article)
Colocalization analyses of genomic elements: approaches, recommendations and challenges. Kanduri, Srinivasa Kalyana Chakravarthi; Bock, Christoph; Gundersen, Sveinung; Hovig, Eivind & Sandve, Geir Kjetil. 2019, Bioinformatics. https://doi.org/10.1093/bioinformatics/bty835 (Academic article)
Convergence of risk prediction models in follicular lymphoma. Silva, Anjali; Bassim, Sleiman; Sarkozy, Clementine; Mottok, Anja; Lackraj, Tracy; Jurinovic, Vindi; Brodtkorb, Marianne; Lingjærde, Ole Christian; Sehn, Laurie H.; Gascoyne, Randy D et al.. 2019, Haematologica. https://doi.org/10.3324/haematol.2018.209031 (Letter to the editor)
Convergence of risk prediction models in follicular lymphoma. Silva, Anjali; Bassim, Sleiman; Sarkozy, Clementine; Mottok, Anja; Lackraj, Tracy; Jurinovic, Vindi; Brodtkorb, Marianne; Lingjærde, Ole Christian; Sehn, Laurie H.; Gascoyne, Randy D et al.. 2019, Haematologica. https://doi.org/10.3324/haematol.2018.209031 (Letter to the editor)
Correction to: Landscape of somatic mutations in 560 breast cancer whole-genome sequences (Nature, (2016), 534, 7605, (47-54), 10.1038/nature17676). Nik-Zainal, Serena; Davies, Helen; Staaf, Johan; Ramakrishna, Manasa; Glodzik, Dominik; Zou, Xueqing; Martincorena, Inigo; Alexandrov, Ludmil B.; Martin, Sancha; Wedge, David C. et al.. 2019, Nature. https://doi.org/10.1038/s41586-019-0883-2 (Errata)
Correction to: Landscape of somatic mutations in 560 breast cancer whole-genome sequences (Nature, (2016), 534, 7605, (47-54), 10.1038/nature17676). Nik-Zainal, Serena; Davies, Helen; Staaf, Johan; Ramakrishna, Manasa; Glodzik, Dominik; Zou, Xueqing; Martincorena, Inigo; Alexandrov, Ludmil B.; Martin, Sancha; Wedge, David C. et al.. 2019, Nature. https://doi.org/10.1038/s41586-019-0883-2 (Errata)
Correction to: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors (Nature Communications, (2017), 8, 1, (1221), 10.1038/s41467-017-01355-0). Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason J.; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R. et al.. 2019, Nature Communications. https://doi.org/10.1038/s41467-019-08512-7 (Errata)
Correction to: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors (Nature Communications, (2017), 8, 1, (1221), 10.1038/s41467-017-01355-0). Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason J.; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R. et al.. 2019, Nature Communications. https://doi.org/10.1038/s41467-019-08512-7 (Errata)
Deep profiling of genetic aberrations and clonal evolution in follicular lymphoma. Bai, Baoyan; Vodák, Daniel; Nakken, Sigve; Wise, Jillian; Blaker, Yngvild Nuvin; Lingjærde, Ole Christian; Brodtkorb, Marianne; Hilden, Vera Irene; Trøen, Gunhild; Lorenz, Susanne et al.. 2019, Blood. https://doi.org/10.1182/blood-2019-128403 (Abstract)
Deep profiling of genetic aberrations and clonal evolution in follicular lymphoma. Bai, Baoyan; Vodák, Daniel; Nakken, Sigve; Wise, Jillian; Blaker, Yngvild Nuvin; Lingjærde, Ole Christian; Brodtkorb, Marianne; Hilden, Vera Irene; Trøen, Gunhild; Lorenz, Susanne et al.. 2019, Blood. https://doi.org/10.1182/blood-2019-128403 (Abstract)
Diagnosing adenomyosis with MRI: a prospective study revisiting the junctional zone thickness cutoff of 12 mm as a diagnostic marker. Tellum, Tina; MATIC, GORDANA; Dormagen, Johann Baptist; Nygård, Ståle; Viktil, Ellen; Qvigstad, Erik & Lieng, Marit. 2019, European Radiology. https://doi.org/10.1007/s00330-019-06308-3 (Academic article)
Diagnosing adenomyosis with MRI: a prospective study revisiting the junctional zone thickness cutoff of 12 mm as a diagnostic marker. Tellum, Tina; MATIC, GORDANA; Dormagen, Johann Baptist; Nygård, Ståle; Viktil, Ellen; Qvigstad, Erik & Lieng, Marit. 2019, European Radiology. https://doi.org/10.1007/s00330-019-06308-3 (Academic article)
Diagnostic Profiling of the Human Public IgM Repertoire With Scalable Mimotope Libraries. Pashov, Anastas; Shivarov, Velizar; Hadzhieva, Maya; Kostov, Victor; Ferdinandov, Dilyan; Heintz, Karen Marie; Pashova, Shina; Todorova, Milena; Vassilev, Tchavdar; Kieber-Emmons, Thomas et al.. 2019, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2019.02796 (Academic article)
Diagnostic Profiling of the Human Public IgM Repertoire With Scalable Mimotope Libraries. Pashov, Anastas; Shivarov, Velizar; Hadzhieva, Maya; Kostov, Victor; Ferdinandov, Dilyan; Heintz, Karen Marie; Pashova, Shina; Todorova, Milena; Vassilev, Tchavdar; Kieber-Emmons, Thomas et al.. 2019, Frontiers in Immunology. https://doi.org/10.3389/fimmu.2019.02796 (Academic article)
Erratum: A map of direct TF-DNA interactions in the human genome (Nucleic acids research (2019) 47 4 (e21)). Gheorghe, Marius; Sandve, Geir Kjetil Ferkingstad; Khan, Aziz; Chèneby, Jeanne; Ballester, Benoit & Mathelier, Anthony. 2019, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkz582 (Errata)
Erratum: A map of direct TF-DNA interactions in the human genome (Nucleic acids research (2019) 47 4 (e21)). Gheorghe, Marius; Sandve, Geir Kjetil Ferkingstad; Khan, Aziz; Chèneby, Jeanne; Ballester, Benoit & Mathelier, Anthony. 2019, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkz582 (Errata)
Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2019, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1006731 (Academic article)
Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2019, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1006731 (Academic article)
Integrative genomic analysis of peritoneal malignant mesothelioma: Understanding a case with extraordinary chemotherapy response. Lund-Andersen, Christin; Nakken, Sigve; Nygård, Ståle; Fromm, Bastian; Aasheim, Lars Birger; Davidson, Ben; Julsrud, Lars; Abrahamsen, Torveig Weum; Kristensen, Annette Torgunrud; Dybdahl, Brit et al.. 2019, Cold Spring Harbor Molecular Case Studies. https://doi.org/10.1101/mcs.a003566 (Academic article)
Integrative genomic analysis of peritoneal malignant mesothelioma: Understanding a case with extraordinary chemotherapy response. Lund-Andersen, Christin; Nakken, Sigve; Nygård, Ståle; Fromm, Bastian; Aasheim, Lars Birger; Davidson, Ben; Julsrud, Lars; Abrahamsen, Torveig Weum; Kristensen, Annette Torgunrud; Dybdahl, Brit et al.. 2019, Cold Spring Harbor Molecular Case Studies. https://doi.org/10.1101/mcs.a003566 (Academic article)
Lack of association between screening interval and cancer stage in Lynch syndrome may be accounted for by over-diagnosis; A prospective Lynch syndrome database report. Seppälä, Toni T.; Ahadova, Aysel; Dominguez-Valentin, Mev; Macrae, Finlay; Evans, D. Gareth; Therkildsen, Christina; Sampson, Julian; Scott, Rodney; Burn, John; Moslein, Gabriela et al.. 2019, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-019-0106-8 (Academic article)
Lack of association between screening interval and cancer stage in Lynch syndrome may be accounted for by over-diagnosis; A prospective Lynch syndrome database report. Seppälä, Toni T.; Ahadova, Aysel; Dominguez-Valentin, Mev; Macrae, Finlay; Evans, D. Gareth; Therkildsen, Christina; Sampson, Julian; Scott, Rodney; Burn, John; Moslein, Gabriela et al.. 2019, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-019-0106-8 (Academic article)
Long-term effects on survival after a 1-year multifactorial vascular risk factor intervention after stroke or TIA: Secondary analysis of a randomized controlled trial, a 7-year follow-up study. Hagberg, Guri; Fure, Brynjar; Sandset, Else Charlotte; Thommessen, Bente; Ihle-Hansen, Håkon; Øksengård, Anne Rita; Nygård, Ståle; Wyller, Torgeir Bruun & Ihle-Hansen, Hege. 2019, Vascular Health and Risk Management. https://doi.org/10.2147/VHRM.S191873 (Academic article)
Long-term effects on survival after a 1-year multifactorial vascular risk factor intervention after stroke or TIA: Secondary analysis of a randomized controlled trial, a 7-year follow-up study. Hagberg, Guri; Fure, Brynjar; Sandset, Else Charlotte; Thommessen, Bente; Ihle-Hansen, Håkon; Øksengård, Anne Rita; Nygård, Ståle; Wyller, Torgeir Bruun & Ihle-Hansen, Hege. 2019, Vascular Health and Risk Management. https://doi.org/10.2147/VHRM.S191873 (Academic article)
MirGeneDB 2.0: the metazoan microRNA complement . Fromm, Bastian; Domanska, Diana Ewa; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind et al.. 2019, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkz885 (Academic article)
MirGeneDB 2.0: the metazoan microRNA complement . Fromm, Bastian; Domanska, Diana Ewa; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind et al.. 2019, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkz885 (Academic article)
miRNA expression changes during the course of neoadjuvant bevacizumab and chemotherapy treatment in breast cancer. Lindholm, Evita Maria; Aure, Miriam Ragle; Haugen, Mads Haugland; Sahlberg, Kristine Kleivi; Kristensen, Vessela N.; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian & Engebråten, Olav. 2019, Molecular Oncology. https://doi.org/10.1002/1878-0261.12561 (Academic article)
miRNA expression changes during the course of neoadjuvant bevacizumab and chemotherapy treatment in breast cancer. Lindholm, Evita Maria; Aure, Miriam Ragle; Haugen, Mads Haugland; Sahlberg, Kristine Kleivi; Kristensen, Vessela N.; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian & Engebråten, Olav. 2019, Molecular Oncology. https://doi.org/10.1002/1878-0261.12561 (Academic article)
Non-invasive diagnosis of adenomyosis: a structured review and meta-analysis of diagnostic accuracy. Tellum, Tina; Nygård, Ståle & Lieng, Marit. 2019, Journal of minimally invasive gynecology. https://doi.org/10.1016/j.jmig.2019.11.001 (Academic literature review)
Non-invasive diagnosis of adenomyosis: a structured review and meta-analysis of diagnostic accuracy. Tellum, Tina; Nygård, Ståle & Lieng, Marit. 2019, Journal of minimally invasive gynecology. https://doi.org/10.1016/j.jmig.2019.11.001 (Academic literature review)
PathTracer: High-sensitivity detection of differential pathway activity in tumours. Nygård, Ståle; Lingjærde, Ole Christian; Caldas, Carlos; Hovig, Eivind; Børresen-Dale, Anne-Lise; Helland, Åslaug & Haakensen, Vilde Drageset. 2019, Scientific Reports. https://doi.org/10.1038/s41598-019-52529-3 (Academic article)
PathTracer: High-sensitivity detection of differential pathway activity in tumours. Nygård, Ståle; Lingjærde, Ole Christian; Caldas, Carlos; Hovig, Eivind; Børresen-Dale, Anne-Lise; Helland, Åslaug & Haakensen, Vilde Drageset. 2019, Scientific Reports. https://doi.org/10.1038/s41598-019-52529-3 (Academic article)
Predictors for Favorable Cognitive Outcome Post-Stroke: A-Seven-Year Follow-Up Study. Hagberg, Guri; Fure, Brynjar; Thommessen, Bente; Ihle-Hansen, Håkon; Øksengård, Anne Rita; Nygård, Ståle; Pendlebury, Sarah T.; Beyer, Mona K.; Wyller, Torgeir Bruun & Ihle-Hansen, Hege. 2019, Dementia and Geriatric Cognitive Disorders. https://doi.org/10.1159/000501850 (Academic article)
Predictors for Favorable Cognitive Outcome Post-Stroke: A-Seven-Year Follow-Up Study. Hagberg, Guri; Fure, Brynjar; Thommessen, Bente; Ihle-Hansen, Håkon; Øksengård, Anne Rita; Nygård, Ståle; Pendlebury, Sarah T.; Beyer, Mona K.; Wyller, Torgeir Bruun & Ihle-Hansen, Hege. 2019, Dementia and Geriatric Cognitive Disorders. https://doi.org/10.1159/000501850 (Academic article)
Responsiveness to PD-1 Blockade in End-Stage Colon Cancer with Gene Locus 9p24.1 Copy-Number Gain. Ree, Anne Hansen; Nygaard, Vigdis; Russnes, Hege Elisabeth Giercksky; Heinrich, Daniel; Nygaard, Vegard; Johansen, Christin; Bergheim, Inger Riise; Hovig, Eivind; Beiske, Klaus; Negård, Anne et al.. 2019, Cancer immunology research. https://doi.org/10.1158/2326-6066.CIR-18-0777 (Academic article)
Responsiveness to PD-1 Blockade in End-Stage Colon Cancer with Gene Locus 9p24.1 Copy-Number Gain. Ree, Anne Hansen; Nygaard, Vigdis; Russnes, Hege Elisabeth Giercksky; Heinrich, Daniel; Nygaard, Vegard; Johansen, Christin; Bergheim, Inger Riise; Hovig, Eivind; Beiske, Klaus; Negård, Anne et al.. 2019, Cancer immunology research. https://doi.org/10.1158/2326-6066.CIR-18-0777 (Academic article)
Results of multigene panel testing in familial cancer cases without genetic cause demonstrated by single gene testing. Dominguez-Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodák, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Holth, Arild; Capellá, Gabriel M. et al.. 2019, Scientific Reports. https://doi.org/10.1038/s41598-019-54517-z (Academic article)
Results of multigene panel testing in familial cancer cases without genetic cause demonstrated by single gene testing. Dominguez-Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodák, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Holth, Arild; Capellá, Gabriel M. et al.. 2019, Scientific Reports. https://doi.org/10.1038/s41598-019-54517-z (Academic article)
Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort. Balaban, Gabriel; Halliday, Brian P; Bai, Wenjia; Porter, Bradley; Malvuccio, Carlotta; Lamata, Pablo; Rinaldi, Christopher Aldo; Plank, Gernot; Rueckert, Daniel; Prasad, Sanjay Kant et al.. 2019, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1007421 (Academic article)
Scar shape analysis and simulated electrical instabilities in a non-ischemic dilated cardiomyopathy patient cohort. Balaban, Gabriel; Halliday, Brian P; Bai, Wenjia; Porter, Bradley; Malvuccio, Carlotta; Lamata, Pablo; Rinaldi, Christopher Aldo; Plank, Gernot; Rueckert, Daniel; Prasad, Sanjay Kant et al.. 2019, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1007421 (Academic article)
Survival by colon cancer stage and screening interval in Lynch syndrome: A prospective Lynch syndrome database report. Dominguez-Valentin, Mev; Seppälä, Toni T.; Sampson, Julian R.; MacRae, Finlay; Winship, Ingrid; Evans, D. Gareth; Scott, Rodney J.; Burn, John; Möslein, Gabriela; Bernstein, Inge et al.. 2019, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-019-0127-3 (Academic article)
Survival by colon cancer stage and screening interval in Lynch syndrome: A prospective Lynch syndrome database report. Dominguez-Valentin, Mev; Seppälä, Toni T.; Sampson, Julian R.; MacRae, Finlay; Winship, Ingrid; Evans, D. Gareth; Scott, Rodney J.; Burn, John; Möslein, Gabriela; Bernstein, Inge et al.. 2019, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-019-0127-3 (Academic article)
The extracellular matrix proteoglycan lumican improves survival and counteracts cardiac dilatation and failure in mice subjected to pressure overload. Mohammadzadeh, Naiyereh; Lunde, Ida Gjervold; Andenæs, Kine; Strand, Mari Elen; Aronsen, Jan Magnus; Skrbic, Biljana; Marstein, Henriette; Bandlien, Caroline; Nygård, Ståle; Gorham, Joshua et al.. 2019, Scientific Reports. https://doi.org/10.1038/s41598-019-45651-9 (Academic article)
The extracellular matrix proteoglycan lumican improves survival and counteracts cardiac dilatation and failure in mice subjected to pressure overload. Mohammadzadeh, Naiyereh; Lunde, Ida Gjervold; Andenæs, Kine; Strand, Mari Elen; Aronsen, Jan Magnus; Skrbic, Biljana; Marstein, Henriette; Bandlien, Caroline; Nygård, Ståle; Gorham, Joshua et al.. 2019, Scientific Reports. https://doi.org/10.1038/s41598-019-45651-9 (Academic article)
The immune microenvironment in non‐small cell lung cancer is predictive of prognosis after surgery. Øjlert, Åsa Kristina; Halvorsen, Ann Rita; Nebdal, Daniel J.H.; Lund-Iversen, Marius; Solberg, Steinar; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2019, Molecular Oncology. https://doi.org/10.1002/1878-0261.12475 (Academic article)
The immune microenvironment in non‐small cell lung cancer is predictive of prognosis after surgery. Øjlert, Åsa Kristina; Halvorsen, Ann Rita; Nebdal, Daniel J.H.; Lund-Iversen, Marius; Solberg, Steinar; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2019, Molecular Oncology. https://doi.org/10.1002/1878-0261.12475 (Academic article)
Total circulating cell-free DNA as a prognostic biomarker in metastatic colorectal cancer before first-line oxaliplatin-based chemotherapy. Hamfjord, Julian; Guren, Tormod Kyrre; Dajani, Olav; Johansen, Julia Sidenius; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Lingjærde, Ole Christian; Tveit, Magne Kjell; Kure, Elin Wenche Hegland et al.. 2019, Annals of Oncology. https://doi.org/10.1093/annonc/mdz139 (Academic article)
Total circulating cell-free DNA as a prognostic biomarker in metastatic colorectal cancer before first-line oxaliplatin-based chemotherapy. Hamfjord, Julian; Guren, Tormod Kyrre; Dajani, Olav; Johansen, Julia Sidenius; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Lingjærde, Ole Christian; Tveit, Magne Kjell; Kure, Elin Wenche Hegland et al.. 2019, Annals of Oncology. https://doi.org/10.1093/annonc/mdz139 (Academic article)
Transcriptional profiling of human intestinal plasma cells reveals effector functions beyond antibody production. Snir, Omri; Kanduri, Srinivasa Kalyana Chakravarthi; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Sollid, Ludvig Magne. 2019, United European Gastroenterology journal. https://doi.org/10.1177/2050640619862461 (Academic article)
Transcriptional profiling of human intestinal plasma cells reveals effector functions beyond antibody production. Snir, Omri; Kanduri, Srinivasa Kalyana Chakravarthi; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Sollid, Ludvig Magne. 2019, United European Gastroenterology journal. https://doi.org/10.1177/2050640619862461 (Academic article)
2018
Ancient genomes from Iceland reveal the making of a human population. Ebenesersdóttir, Sigríður Sunna; Sandoval-Velasco, Marcela; Gunnarsdóttir, Ellen D.; Jagadeesan, Anuradha; Guðmundsdóttir, Valdís B.; Thordardóttir, Elísabet L.; Einarsdóttir, Margrét S.; Moore, Kristjan H. S.; Sigurðsson, Ásgeir; Magnúsdóttir, Droplaug N. et al.. 2018, Science. https://doi.org/10.1126/science.aar2625 (Academic article)Ancient genomes from Iceland reveal the making of a human population. Ebenesersdóttir, Sigríður Sunna; Sandoval-Velasco, Marcela; Gunnarsdóttir, Ellen D.; Jagadeesan, Anuradha; Guðmundsdóttir, Valdís B.; Thordardóttir, Elísabet L.; Einarsdóttir, Margrét S.; Moore, Kristjan H. S.; Sigurðsson, Ásgeir; Magnúsdóttir, Droplaug N. et al.. 2018, Science. https://doi.org/10.1126/science.aar2625 (Academic article)
Artesunate shows potent anti-tumor activity in B-cell lymphoma. Våtsveen, Thea Kristin; Myhre, Marit Renee; Steen, Chloe Beate; Wälchli, Sébastien; Lingjærde, Ole Christian; Bai, Baoyan; Dillard, Pierre; Theodossiou, Theodossis; Holien, Toril; Sundan, Anders et al.. 2018, Journal of Hematology & Oncology. https://doi.org/10.1186/s13045-018-0561-0 (Academic article)
Artesunate shows potent anti-tumor activity in B-cell lymphoma. Våtsveen, Thea Kristin; Myhre, Marit Renee; Steen, Chloe Beate; Wälchli, Sébastien; Lingjærde, Ole Christian; Bai, Baoyan; Dillard, Pierre; Theodossiou, Theodossis; Holien, Toril; Sundan, Anders et al.. 2018, Journal of Hematology & Oncology. https://doi.org/10.1186/s13045-018-0561-0 (Academic article)
Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason J.; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R. et al.. 2018, Nature Communications. https://doi.org/10.1038/s41467-018-07842-2 (Errata)
Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason J.; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R. et al.. 2018, Nature Communications. https://doi.org/10.1038/s41467-018-07842-2 (Errata)
Blood pressure variability and risk of cardiovascular events and death in patients with hypertension and different baseline risks. Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre; Julius, Stevo; Hua, Tsushung A.; Rothwell, Peter M.; Mancia, Giuseppe; Parati, Gianfranco; Weber, Michael A. & Berge, Eivind. 2018, European Heart Journal. https://doi.org/10.1093/eurheartj/ehx760 (Academic article)
Blood pressure variability and risk of cardiovascular events and death in patients with hypertension and different baseline risks. Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre; Julius, Stevo; Hua, Tsushung A.; Rothwell, Peter M.; Mancia, Giuseppe; Parati, Gianfranco; Weber, Michael A. & Berge, Eivind. 2018, European Heart Journal. https://doi.org/10.1093/eurheartj/ehx760 (Academic article)
Cachexia does not induce loss of myonuclei or muscle fibres during xenografted prostate cancer in mice. Winje, Ivan; Sheng, Xia; Hansson, Kenth-Arne; Solbrå, Andreas Våvang; Tennøe, Simen; Saatcioglu, Fahri; Bruusgaard, Jo C. & Gundersen, Kristian. 2018, Acta Physiologica. https://doi.org/10.1111/apha.13204 (Academic article)
Cachexia does not induce loss of myonuclei or muscle fibres during xenografted prostate cancer in mice. Winje, Ivan; Sheng, Xia; Hansson, Kenth-Arne; Solbrå, Andreas Våvang; Tennøe, Simen; Saatcioglu, Fahri; Bruusgaard, Jo C. & Gundersen, Kristian. 2018, Acta Physiologica. https://doi.org/10.1111/apha.13204 (Academic article)
Cancer risk and survival in path_MMR carriers by gene and gender up to 75 years of age: a report from the Prospective Lynch Syndrome Database. Møller, Pål; Seppälä, Toni T.; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paulo; Evans, D. Gareth; Lindblom, Annika; Macrae, Finlay; Blanco, Ignacio; Sijmons, Rolf H. et al.. 2018, Gut. https://doi.org/10.1136/gutjnl-2017-314057 (Academic article)
Cancer risk and survival in path_MMR carriers by gene and gender up to 75 years of age: a report from the Prospective Lynch Syndrome Database. Møller, Pål; Seppälä, Toni T.; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paulo; Evans, D. Gareth; Lindblom, Annika; Macrae, Finlay; Blanco, Ignacio; Sijmons, Rolf H. et al.. 2018, Gut. https://doi.org/10.1136/gutjnl-2017-314057 (Academic article)
Centrosomal ALIX regulates mitotic spindle orientation by modulating astral microtubule dynamics. Malerød, Lene; Le Borgne, Roland; Lie-Jensen, Anette Christensen; Eikenes, Åsmund Husabø; Brech, Andreas; Liestøl, Knut; Stenmark, Harald & Haglund, Kaisa. 2018, EMBO Journal. https://doi.org/10.15252/embj.201797741 (Academic article)
Centrosomal ALIX regulates mitotic spindle orientation by modulating astral microtubule dynamics. Malerød, Lene; Le Borgne, Roland; Lie-Jensen, Anette Christensen; Eikenes, Åsmund Husabø; Brech, Andreas; Liestøl, Knut; Stenmark, Harald & Haglund, Kaisa. 2018, EMBO Journal. https://doi.org/10.15252/embj.201797741 (Academic article)
Change in Cardiorespiratory Fitness and Risk of Stroke and Death.. Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind. 2018, Stroke. https://doi.org/10.1161/STROKEAHA.118.021798 (Academic article)
Change in Cardiorespiratory Fitness and Risk of Stroke and Death.. Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind. 2018, Stroke. https://doi.org/10.1161/STROKEAHA.118.021798 (Academic article)
Coloc-stats: A unified web interface to perform colocalization analysis of genomic features. Simovski, Boris; Kanduri, Srinivasa Kalyana Chakravarthi; Gundersen, Sveinung; Titov, Dmytro; Domanska, Diana Ewa; Bock, Christoph; Bossini-Castillo, Lara; Chikina, Maria; Favorov, Alexander; Layer, Ryan M. et al.. 2018, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gky474 (Academic article)
Coloc-stats: A unified web interface to perform colocalization analysis of genomic features. Simovski, Boris; Kanduri, Srinivasa Kalyana Chakravarthi; Gundersen, Sveinung; Titov, Dmytro; Domanska, Diana Ewa; Bock, Christoph; Bossini-Castillo, Lara; Chikina, Maria; Favorov, Alexander; Layer, Ryan M. et al.. 2018, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gky474 (Academic article)
Correction: A systematic comparison of copy number alterations in four types of female cancer. Kaveh, Fatemeh; Baumbusch, Lars Oliver; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian; Edvardsen, Hege; Kristensen, Vessela N. & Solvang, Hiroko Kato. 2018, BMC Cancer. https://doi.org/10.1186/s12885-017-3766-7 (Errata)
Correction: A systematic comparison of copy number alterations in four types of female cancer. Kaveh, Fatemeh; Baumbusch, Lars Oliver; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian; Edvardsen, Hege; Kristensen, Vessela N. & Solvang, Hiroko Kato. 2018, BMC Cancer. https://doi.org/10.1186/s12885-017-3766-7 (Errata)
Data Mining for Patient Friendly Apnea Detection. Kristiansen, Stein; Sønsteby Hugaas, Mari; Goebel, Vera Hermine; Plagemann, Thomas Peter; Nikolaidis, Konstantinos & Liestøl, Knut. 2018, IEEE Access. https://doi.org/10.1109/ACCESS.2018.2882270 (Academic article)
Data Mining for Patient Friendly Apnea Detection. Kristiansen, Stein; Sønsteby Hugaas, Mari; Goebel, Vera Hermine; Plagemann, Thomas Peter; Nikolaidis, Konstantinos & Liestøl, Knut. 2018, IEEE Access. https://doi.org/10.1109/ACCESS.2018.2882270 (Academic article)
Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. Risnes, Louise Fremgaard; Christophersen, Asbjørn; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Sandve, Geir Kjetil; Sarna, Vikas Kumar; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang & Sollid, Ludvig Magne. 2018, Journal of Clinical Investigation. https://doi.org/10.1172/JCI98819 (Academic article)
Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. Risnes, Louise Fremgaard; Christophersen, Asbjørn; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Sandve, Geir Kjetil; Sarna, Vikas Kumar; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang & Sollid, Ludvig Magne. 2018, Journal of Clinical Investigation. https://doi.org/10.1172/JCI98819 (Academic article)
Evaluating different breast tumor progression models using screening data. Westvik, Asbjørn; Weedon-Fekjær, Harald; Mæhlen, Jan & Liestøl, Knut. 2018, BMC Cancer. https://doi.org/10.1186/s12885-018-4130-2 (Academic article)
Evaluating different breast tumor progression models using screening data. Westvik, Asbjørn; Weedon-Fekjær, Harald; Mæhlen, Jan & Liestøl, Knut. 2018, BMC Cancer. https://doi.org/10.1186/s12885-018-4130-2 (Academic article)
Experimental directory structure (Exdir): An alternative to HDF5 without introducing a new file format. Dragly, Svenn-Arne; Mobarhan, Milad; Lepperød, Mikkel Elle; Tennøe, Simen; Fyhn, Marianne; Hafting, Torkel & Malthe-Sørenssen, Anders. 2018, Frontiers in Neuroinformatics. https://doi.org/10.3389/fninf.2018.00016 (Academic article)
Experimental directory structure (Exdir): An alternative to HDF5 without introducing a new file format. Dragly, Svenn-Arne; Mobarhan, Milad; Lepperød, Mikkel Elle; Tennøe, Simen; Fyhn, Marianne; Hafting, Torkel & Malthe-Sørenssen, Anders. 2018, Frontiers in Neuroinformatics. https://doi.org/10.3389/fninf.2018.00016 (Academic article)
Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. Yao, Ying; Zia, Asima; Wyrozemski, Lukasz Adam; Lindeman, Ida; Sandve, Geir Kjetil & Qiao, Shuo Wang. 2018, PLOS ONE. https://doi.org/10.1371/journal.pone.0208484 (Academic article)
Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. Yao, Ying; Zia, Asima; Wyrozemski, Lukasz Adam; Lindeman, Ida; Sandve, Geir Kjetil & Qiao, Shuo Wang. 2018, PLOS ONE. https://doi.org/10.1371/journal.pone.0208484 (Academic article)
Filesystem Front-end for Seamless Job Management in Sensitive Data e-Infrastructures and Cloud Federation. Azab, Abdulrahman; Meling, Hein; Hovig, Eivind & Pursula, Antti. 2018, IEEE (Institute of Electrical and Electronics Engineers). https://doi.org/10.1109/BigData.2018.8622144 (Academic chapter/article/Conference paper)
Filesystem Front-end for Seamless Job Management in Sensitive Data e-Infrastructures and Cloud Federation. Azab, Abdulrahman; Meling, Hein; Hovig, Eivind & Pursula, Antti. 2018, IEEE (Institute of Electrical and Electronics Engineers). https://doi.org/10.1109/BigData.2018.8622144 (Academic chapter/article/Conference paper)
From colorectal cancer pattern to the characterization of individuals at risk: Picture for genetic research in Latin America. Vaccaro, Carlos Alberto; López‐Kostner, Francisco; Della Valle, Adriana; Palmero, Edenir Inêz; Rossi, Benedito Mauro; Antelo, Marina; Solano, Angela; Carraro, Dirce Maria; Forones, Nora Manoukian; Bohorquez, Mabel et al.. 2018, International Journal of Cancer. https://doi.org/10.1002/ijc.31920 (Academic literature review)
From colorectal cancer pattern to the characterization of individuals at risk: Picture for genetic research in Latin America. Vaccaro, Carlos Alberto; López‐Kostner, Francisco; Della Valle, Adriana; Palmero, Edenir Inêz; Rossi, Benedito Mauro; Antelo, Marina; Solano, Angela; Carraro, Dirce Maria; Forones, Nora Manoukian; Bohorquez, Mabel et al.. 2018, International Journal of Cancer. https://doi.org/10.1002/ijc.31920 (Academic literature review)
Genetic variants of prospectively demonstrated phenocopies in BRCA1/2 kindreds. Dominguez Valentin, Mev; Evans, D. Gareth R.; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra et al.. 2018, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-018-0086-0 (Academic article)
Genetic variants of prospectively demonstrated phenocopies in BRCA1/2 kindreds. Dominguez Valentin, Mev; Evans, D. Gareth R.; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra et al.. 2018, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-018-0086-0 (Academic article)
Human ectoparasites and the spread of plague in Europe during the Second Pandemic. Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn. 2018, Proceedings of the National Academy of Sciences of the United States of America. https://doi.org/10.1073/pnas.1715640115 (Academic article)
Human ectoparasites and the spread of plague in Europe during the Second Pandemic. Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn. 2018, Proceedings of the National Academy of Sciences of the United States of America. https://doi.org/10.1073/pnas.1715640115 (Academic article)
Identification of genetic variants for clinical management of familial colorectal tumors. Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål et al.. 2018, BMC Medical Genetics. https://doi.org/10.1186/s12881-018-0533-9 (Academic article)
Identification of genetic variants for clinical management of familial colorectal tumors. Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål et al.. 2018, BMC Medical Genetics. https://doi.org/10.1186/s12881-018-0533-9 (Academic article)
Intratumor heterogeneity defines treatment-resistant HER2+ breast tumors. Rye, Inga Hansine; Trinh, Anne; Sætersdal, Anna Barbro; Nebdal, Daniel J.H.; Lingjærde, Ole Christian; Almendro, Vanessa; Polyak, Kornelia; Børresen-Dale, Anne-Lise; Helland, Åslaug; Markowetz, Florian et al.. 2018, Molecular Oncology. https://doi.org/10.1002/1878-0261.12375 (Academic article)
Intratumor heterogeneity defines treatment-resistant HER2+ breast tumors. Rye, Inga Hansine; Trinh, Anne; Sætersdal, Anna Barbro; Nebdal, Daniel J.H.; Lingjærde, Ole Christian; Almendro, Vanessa; Polyak, Kornelia; Børresen-Dale, Anne-Lise; Helland, Åslaug; Markowetz, Florian et al.. 2018, Molecular Oncology. https://doi.org/10.1002/1878-0261.12375 (Academic article)
Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis. Domanska, Diana Ewa; Kanduri, Srinivasa Kalyana Chakravarthi; Simovski, Boris & Sandve, Geir Kjetil. 2018, BMC Bioinformatics. https://doi.org/10.1186/s12859-018-2438-1 (Academic article)
Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis. Domanska, Diana Ewa; Kanduri, Srinivasa Kalyana Chakravarthi; Simovski, Boris & Sandve, Geir Kjetil. 2018, BMC Bioinformatics. https://doi.org/10.1186/s12859-018-2438-1 (Academic article)
Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0. Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute. 2018, Frontiers in Neuroinformatics. https://doi.org/10.3389/fninf.2018.00092 (Academic article)
Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0. Hagen, Espen; Næss, Solveig; Ness, Torbjørn V & Einevoll, Gaute. 2018, Frontiers in Neuroinformatics. https://doi.org/10.3389/fninf.2018.00092 (Academic article)
N-glycan signatures identified in tumor interstitial fluid and serum of breast cancer patients: association with tumor biology and clinical outcome. Terkelsen, Thilde; Haakensen, Vilde Drageset; Saldova, Radka; Gromov, Pavel; Hansen, Merete Kjær; Stockmann, Henning; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise; Papaleo, Elena; Helland, Åslaug et al.. 2018, Molecular Oncology. https://doi.org/10.1002/1878-0261.12312 (Academic article)
N-glycan signatures identified in tumor interstitial fluid and serum of breast cancer patients: association with tumor biology and clinical outcome. Terkelsen, Thilde; Haakensen, Vilde Drageset; Saldova, Radka; Gromov, Pavel; Hansen, Merete Kjær; Stockmann, Henning; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise; Papaleo, Elena; Helland, Åslaug et al.. 2018, Molecular Oncology. https://doi.org/10.1002/1878-0261.12312 (Academic article)
Neutral tumor evolution?. Tarabichi, Maxime; Martincorena, Iñigo; Gerstung, Moritz; Leroi, Armand M.; Markowetz, Florian; Spellman, Paul; Morris, Quaid D; Lingjærde, Ole Christian; Wedge, David C. & Van Loo, Peter. 2018, Nature Genetics. https://doi.org/10.1038/s41588-018-0258-x (Letter to the editor)
Neutral tumor evolution?. Tarabichi, Maxime; Martincorena, Iñigo; Gerstung, Moritz; Leroi, Armand M.; Markowetz, Florian; Spellman, Paul; Morris, Quaid D; Lingjærde, Ole Christian; Wedge, David C. & Van Loo, Peter. 2018, Nature Genetics. https://doi.org/10.1038/s41588-018-0258-x (Letter to the editor)
Norwegian e-Infrastructure for Life Sciences (NeLS). Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš et al.. 2018, F1000 Research. https://doi.org/10.5256/f1000research.16472.r35600 (Academic article)
Norwegian e-Infrastructure for Life Sciences (NeLS). Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš et al.. 2018, F1000 Research. https://doi.org/10.5256/f1000research.16472.r35600 (Academic article)
Patterns of genomic evolution in advanced melanoma. Birkeland, Einar Elvbakken; Zhang, Shan; Poduval, Deepak; Geisler, Jürgen; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda; Hovig, Eivind; Myklebost, Ola; Knappskog, Stian et al.. 2018, Nature Communications. https://doi.org/10.1038/s41467-018-05063-1 (Academic article)
Patterns of genomic evolution in advanced melanoma. Birkeland, Einar Elvbakken; Zhang, Shan; Poduval, Deepak; Geisler, Jürgen; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda; Hovig, Eivind; Myklebost, Ola; Knappskog, Stian et al.. 2018, Nature Communications. https://doi.org/10.1038/s41467-018-05063-1 (Academic article)
Personal Cancer Genome Reporter: Variant interpretation report for precision oncology. Nakken, Sigve; Fournous, Ghislain; Vodak, Daniel; Aasheim, Lars Birger; Myklebost, Ola & Hovig, Eivind. 2018, Bioinformatics. https://doi.org/10.1093/bioinformatics/btx817 (Short communication)
Personal Cancer Genome Reporter: Variant interpretation report for precision oncology. Nakken, Sigve; Fournous, Ghislain; Vodak, Daniel; Aasheim, Lars Birger; Myklebost, Ola & Hovig, Eivind. 2018, Bioinformatics. https://doi.org/10.1093/bioinformatics/btx817 (Short communication)
Physical fitness is a modifiable predictor of early cardiovascular death: A 35-year follow-up study of 2014 healthy middle-aged men. Engeseth, Kristian; Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Grundvold, Irene; Liestøl, Knut; Kjeldsen, Sverre; Bodegard, Johan; Erikssen, Jan Emil; Gjesdal, Knut & Skretteberg, Torger. 2018, European Journal of Preventive Cardiology (EJPC). https://doi.org/10.1177/2047487318793459 (Academic article)
Physical fitness is a modifiable predictor of early cardiovascular death: A 35-year follow-up study of 2014 healthy middle-aged men. Engeseth, Kristian; Prestgaard, Erik Edvard; Mariampillai, Julian Eek; Grundvold, Irene; Liestøl, Knut; Kjeldsen, Sverre; Bodegard, Johan; Erikssen, Jan Emil; Gjesdal, Knut & Skretteberg, Torger. 2018, European Journal of Preventive Cardiology (EJPC). https://doi.org/10.1177/2047487318793459 (Academic article)
Reply to Park et al.: Human ectoparasite transmission of plague during the Second Pandemic is still plausible. Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn. 2018, Proceedings of the National Academy of Sciences of the United States of America. https://doi.org/10.1073/pnas.1810221115 (Letter to the editor)
Reply to Park et al.: Human ectoparasite transmission of plague during the Second Pandemic is still plausible. Dean, Katharine Rose; Krauer, Fabienne; Walløe, Lars; Lingjærde, Ole Christian; Bramanti, Barbara; Stenseth, Nils Christian & Schmid, Boris Valentijn. 2018, Proceedings of the National Academy of Sciences of the United States of America. https://doi.org/10.1073/pnas.1810221115 (Letter to the editor)
Response to letters from Torp-Pedersen and colleagues and de Courson and colleagues. Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre & Berge, Eivind. 2018, European Heart Journal. https://doi.org/10.1093/eurheartj/ehy605 (Reader opinion piece)
Response to letters from Torp-Pedersen and colleagues and de Courson and colleagues. Mehlum, Maria Hollund; Liestøl, Knut; Kjeldsen, Sverre & Berge, Eivind. 2018, European Heart Journal. https://doi.org/10.1093/eurheartj/ehy605 (Reader opinion piece)
Retraction Note to: The BRCA2 variant c.68–7 T > A is associated with breast cancer. Møller, Pål & Hovig, Eivind. 2018, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-018-0093-1 (Errata)
Retraction Note to: The BRCA2 variant c.68–7 T > A is associated with breast cancer. Møller, Pål & Hovig, Eivind. 2018, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-018-0093-1 (Errata)
Sample-Index Misassignment Impacts Tumour Exome Sequencing. Vodak, Daniel; Lorenz, Susanne; Nakken, Sigve; Aasheim, Lars Birger; Holte, Harald; Bai, Baoyan; Myklebost, Ola; Meza, Leonardo Zepeda & Hovig, Eivind. 2018, Scientific Reports. https://doi.org/10.1038/s41598-018-23563-4 (Academic article)
Sample-Index Misassignment Impacts Tumour Exome Sequencing. Vodak, Daniel; Lorenz, Susanne; Nakken, Sigve; Aasheim, Lars Birger; Holte, Harald; Bai, Baoyan; Myklebost, Ola; Meza, Leonardo Zepeda & Hovig, Eivind. 2018, Scientific Reports. https://doi.org/10.1038/s41598-018-23563-4 (Academic article)
Survival in patients with univentricular hearts: The impact of right versus left ventricular morphology. Erikssen, Gunnar; Aboulhosn, Jamil; Lin, Jeannette; Liestøl, Knut; Estensen, Mette-Elise; Gjesdal, Ola; Skulstad, Helge; Døhlen, Gaute & Lindberg, Harald L. 2018, Open heart. https://doi.org/10.1136/openhrt-2018-000902 (Academic article)
Survival in patients with univentricular hearts: The impact of right versus left ventricular morphology. Erikssen, Gunnar; Aboulhosn, Jamil; Lin, Jeannette; Liestøl, Knut; Estensen, Mette-Elise; Gjesdal, Ola; Skulstad, Helge; Døhlen, Gaute & Lindberg, Harald L. 2018, Open heart. https://doi.org/10.1136/openhrt-2018-000902 (Academic article)
The MCL35 gene expression proliferation assay predicts high-risk MCL patients in a Norwegian cohort of younger patients given intensive first line therapy. Holte, Harald; Beiske, Klaus; Boyle, Merrill; Trøen, Gunhild; Blaker, Yngvild Nuvin; Myklebust, June; Kvaløy, Anne Sunniva; Rosenwald, Andreas; Lingjærde, Ole Christian; Rimsza, Lisa M. et al.. 2018, British Journal of Haematology. https://doi.org/10.1111/bjh.15518 (Academic article)
The MCL35 gene expression proliferation assay predicts high-risk MCL patients in a Norwegian cohort of younger patients given intensive first line therapy. Holte, Harald; Beiske, Klaus; Boyle, Merrill; Trøen, Gunhild; Blaker, Yngvild Nuvin; Myklebust, June; Kvaløy, Anne Sunniva; Rosenwald, Andreas; Lingjærde, Ole Christian; Rimsza, Lisa M. et al.. 2018, British Journal of Haematology. https://doi.org/10.1111/bjh.15518 (Academic article)
Time series analysis of neoadjuvant chemotherapy and bevacizumab-treated breast carcinomas reveals a systemic shift in genomic aberrations. Møller, Elen Kristine; Nord, Silje; Wedge, David C; Lingjærde, Ole Christian; Silwal-Pandit, Laxmi; Gythfeldt, Hedda; Vollan, Hans Kristian Moen; Fleischer, Thomas; Krohn, Marit; Schlichting, Ellen et al.. 2018, Genome Medicine. https://doi.org/10.1186/s13073-018-0601-y (Academic article)
Time series analysis of neoadjuvant chemotherapy and bevacizumab-treated breast carcinomas reveals a systemic shift in genomic aberrations. Møller, Elen Kristine; Nord, Silje; Wedge, David C; Lingjærde, Ole Christian; Silwal-Pandit, Laxmi; Gythfeldt, Hedda; Vollan, Hans Kristian Moen; Fleischer, Thomas; Krohn, Marit; Schlichting, Ellen et al.. 2018, Genome Medicine. https://doi.org/10.1186/s13073-018-0601-y (Academic article)
Total circulating cell-free DNA (cfDNA) as a prognostic biomarker in metastatic colorectal cancer prior to first-line oxaliplatin-based chemotherapy. Hamfjord, Julian; Guren, Tormod Kyrre; Dajani, Olav; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Christoffersen, Thoralf; Lingjærde, Ole Christian; Tveit, Magne Kjell; Kure, Elin Wenche Hegland et al.. 2018, Annals of Oncology. https://doi.org/10.1093/annonc/mdy149.025 (Abstract)
Total circulating cell-free DNA (cfDNA) as a prognostic biomarker in metastatic colorectal cancer prior to first-line oxaliplatin-based chemotherapy. Hamfjord, Julian; Guren, Tormod Kyrre; Dajani, Olav; Glimelius, Bengt; Sorbye, Halfdan; Pfeiffer, Per; Christoffersen, Thoralf; Lingjærde, Ole Christian; Tveit, Magne Kjell; Kure, Elin Wenche Hegland et al.. 2018, Annals of Oncology. https://doi.org/10.1093/annonc/mdy149.025 (Abstract)
Uncertainpy: A Python toolbox for uncertainty quantification and sensitivity analysis in computational neuroscience. Tennøe, Simen; Halnes, Geir & Einevoll, Gaute. 2018, Frontiers in Neuroinformatics. https://doi.org/10.3389/fninf.2018.00049 (Academic article)
Uncertainpy: A Python toolbox for uncertainty quantification and sensitivity analysis in computational neuroscience. Tennøe, Simen; Halnes, Geir & Einevoll, Gaute. 2018, Frontiers in Neuroinformatics. https://doi.org/10.3389/fninf.2018.00049 (Academic article)
2017
A survey of the clinicopathological and molecular characteristics of patients with suspected Lynch syndrome in Latin America. Rossi, Benedito Mauro; Palmero, Edenir Inêz; López-Kostner, Francisco; Sarroca, Carlos; Vaccaro, Carlos Alberto; Spirandelli, Florencia; Ashton-Prolla, Patricia; Rodriguez, Yenni; Galvão, Henrique de Campos Reis; Reis, Rui Manuel et al.. 2017, BMC Cancer. https://doi.org/10.1186/s12885-017-3599-4 (Academic article)A survey of the clinicopathological and molecular characteristics of patients with suspected Lynch syndrome in Latin America. Rossi, Benedito Mauro; Palmero, Edenir Inêz; López-Kostner, Francisco; Sarroca, Carlos; Vaccaro, Carlos Alberto; Spirandelli, Florencia; Ashton-Prolla, Patricia; Rodriguez, Yenni; Galvão, Henrique de Campos Reis; Reis, Rui Manuel et al.. 2017, BMC Cancer. https://doi.org/10.1186/s12885-017-3599-4 (Academic article)
Assessing prescription drug abuse using functional Principal component analysis (FPCA) of wastewater data. Salvatore, Stefania; Røislien, Jo; Baz-Lomba, Jose A & Bramness, Jørgen G. 2017, Pharmacoepidemiology and Drug Safety. https://doi.org/10.1002/pds.4127 (Academic article)
Assessing prescription drug abuse using functional Principal component analysis (FPCA) of wastewater data. Salvatore, Stefania; Røislien, Jo; Baz-Lomba, Jose A & Bramness, Jørgen G. 2017, Pharmacoepidemiology and Drug Safety. https://doi.org/10.1002/pds.4127 (Academic article)
Bioinformatics approaches to profile the tumor microenvironment for immunotherapeutic discovery. Clancy, Trevor; dannenfelser, ruth; Troyanskaya, Olga G.; Malmberg, Karl-Johan; Hovig, Eivind & Kristensen, Vessela N.. 2017, Current pharmaceutical design. https://doi.org/10.2174/1381612823666170710154936 (Academic article)
Bioinformatics approaches to profile the tumor microenvironment for immunotherapeutic discovery. Clancy, Trevor; dannenfelser, ruth; Troyanskaya, Olga G.; Malmberg, Karl-Johan; Hovig, Eivind & Kristensen, Vessela N.. 2017, Current pharmaceutical design. https://doi.org/10.2174/1381612823666170710154936 (Academic article)
Breast cancer molecular stratification– from intrinsic subtypes to integrative clusters. Russnes, Hege Elisabeth Giercksky; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise & Caldas, Carlos. 2017, American Journal of Pathology. https://doi.org/10.1016/j.ajpath.2017.04.022 (Academic article)
Breast cancer molecular stratification– from intrinsic subtypes to integrative clusters. Russnes, Hege Elisabeth Giercksky; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise & Caldas, Carlos. 2017, American Journal of Pathology. https://doi.org/10.1016/j.ajpath.2017.04.022 (Academic article)
Chimeraviz: A tool for visualizing chimeric RNA. Lågstad, Stian; Zhao, Sen; Hoff, Andreas Midbøe; Johannessen, Bjarne; Lingjærde, Ole Christian & Skotheim, Rolf I.. 2017, Bioinformatics. https://doi.org/10.1093/bioinformatics/btx329 (Academic article)
Chimeraviz: A tool for visualizing chimeric RNA. Lågstad, Stian; Zhao, Sen; Hoff, Andreas Midbøe; Johannessen, Bjarne; Lingjærde, Ole Christian & Skotheim, Rolf I.. 2017, Bioinformatics. https://doi.org/10.1093/bioinformatics/btx329 (Academic article)
Colorectal cancer incidence in path_MLH1 carriers subjected to different follow-up protocols: A Prospective Lynch Syndrome Database report. Seppälä, Toni; Pylvänäinen, Kirsi; Evans, Dafydd Gareth; Järvinen, Heikki; Renkonen-Sinisalo, Laura; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Lindblom, Annika; Macrae, Finlay et al.. 2017, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-017-0078-5 (Academic article)
Colorectal cancer incidence in path_MLH1 carriers subjected to different follow-up protocols: A Prospective Lynch Syndrome Database report. Seppälä, Toni; Pylvänäinen, Kirsi; Evans, Dafydd Gareth; Järvinen, Heikki; Renkonen-Sinisalo, Laura; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Lindblom, Annika; Macrae, Finlay et al.. 2017, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-017-0078-5 (Academic article)
Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy. Salvatore, Stefania; Domanska, Diana Ewa; Wood, Mollie; Nordeng, Hedvig Marie Egeland & Sandve, Geir Kjetil. 2017, PLOS ONE. https://doi.org/10.1371/journal.pone.0190101 (Academic article)
Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy. Salvatore, Stefania; Domanska, Diana Ewa; Wood, Mollie; Nordeng, Hedvig Marie Egeland & Sandve, Geir Kjetil. 2017, PLOS ONE. https://doi.org/10.1371/journal.pone.0190101 (Academic article)
Coordinates and intervals in graph-based reference genomes. Rand, Knut Dagestad; Grytten, Ivar; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2017, BMC Bioinformatics. https://doi.org/10.1186/s12859-017-1678-9 (Academic article)
Coordinates and intervals in graph-based reference genomes. Rand, Knut Dagestad; Grytten, Ivar; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil. 2017, BMC Bioinformatics. https://doi.org/10.1186/s12859-017-1678-9 (Academic article)
Differential Expression and Cell-Type Specificity of Perineuronal Nets in Hippocampus, Medial Entorhinal Cortex and Visual Cortex Examined in the Rat and Mouse. Lensjø, Kristian Kinden; Christensen, Ane Charlotte; Tennøe, Simen; Fyhn, Marianne & Hafting, Torkel. 2017, eNeuro. https://doi.org/10.1523/ENEURO.0379-16.2017 (Academic article)
Differential Expression and Cell-Type Specificity of Perineuronal Nets in Hippocampus, Medial Entorhinal Cortex and Visual Cortex Examined in the Rat and Mouse. Lensjø, Kristian Kinden; Christensen, Ane Charlotte; Tennøe, Simen; Fyhn, Marianne & Hafting, Torkel. 2017, eNeuro. https://doi.org/10.1523/ENEURO.0379-16.2017 (Academic article)
Distinct patterns of B-cell receptor signaling in non-Hodgkin lymphomas identified by single-cell profiling. Myklebust, June; Brody, Joshua; Kohrt, Holbrook E.; Kolstad, Arne; Czerwinski, Debra K; Waelchli, Sebastien; Green, Michael R.; Trøen, Gunhild; Liestøl, Knut; Beiske, Klaus et al.. 2017, Blood. https://doi.org/10.1182/blood-2016-05-718494 (Academic article)
Distinct patterns of B-cell receptor signaling in non-Hodgkin lymphomas identified by single-cell profiling. Myklebust, June; Brody, Joshua; Kohrt, Holbrook E.; Kolstad, Arne; Czerwinski, Debra K; Waelchli, Sebastien; Green, Michael R.; Trøen, Gunhild; Liestøl, Knut; Beiske, Klaus et al.. 2017, Blood. https://doi.org/10.1182/blood-2016-05-718494 (Academic article)
Erratum to: Exploring functional data analysis and wavelet principal component analysis on ecstasy (MDMA) wastewater data. Salvatore, Stefania; Bramness, Jørgen Gustav & Røislien, Jo. 2017, BMC Medical Research Methodology. https://doi.org/10.1186/s12874-017-0311-y (Errata)
Erratum to: Exploring functional data analysis and wavelet principal component analysis on ecstasy (MDMA) wastewater data. Salvatore, Stefania; Bramness, Jørgen Gustav & Røislien, Jo. 2017, BMC Medical Research Methodology. https://doi.org/10.1186/s12874-017-0311-y (Errata)
Exercise systolic blood pressure at moderate workload predicts cardiovascular disease and mortality through 35 years of follow-up in healthy, middle-aged men. Mariampillai, Julian Eek; Engeseth, Kristian; Kjeldsen, Sverre Erik; Grundvold, Irene; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2017, Blood Pressure. https://doi.org/10.1080/08037051.2017.1291276 (Academic article)
Exercise systolic blood pressure at moderate workload predicts cardiovascular disease and mortality through 35 years of follow-up in healthy, middle-aged men. Mariampillai, Julian Eek; Engeseth, Kristian; Kjeldsen, Sverre Erik; Grundvold, Irene; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2017, Blood Pressure. https://doi.org/10.1080/08037051.2017.1291276 (Academic article)
Fecal carriage of extended spectrum β-lactamase producing Escherichia coli and Klebsiella pneumoniae after urinary tract infection - A three year prospective cohort study. Jørgensen, Silje; Søraas, Arne Vasli; Sundsfjord, Arnfinn; Liestøl, Knut; Leegaard, Truls Michael & Jenum, Pål. 2017, PLOS ONE. https://doi.org/10.1371/journal.pone.0173510 (Academic article)
Fecal carriage of extended spectrum β-lactamase producing Escherichia coli and Klebsiella pneumoniae after urinary tract infection - A three year prospective cohort study. Jørgensen, Silje; Søraas, Arne Vasli; Sundsfjord, Arnfinn; Liestøl, Knut; Leegaard, Truls Michael & Jenum, Pål. 2017, PLOS ONE. https://doi.org/10.1371/journal.pone.0173510 (Academic article)
Genome build information is an essential part of genomic track files. Kanduri, Chakravarthi; Domanska, Diana; Hovig, Eivind & Sandve, Geir Kjetil. 2017, Genome Biology. https://doi.org/10.1186/s13059-017-1312-1 (Letter to the editor)
Genome build information is an essential part of genomic track files. Kanduri, Chakravarthi; Domanska, Diana; Hovig, Eivind & Sandve, Geir Kjetil. 2017, Genome Biology. https://doi.org/10.1186/s13059-017-1312-1 (Letter to the editor)
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn et al.. 2017, GigaScience. https://doi.org/10.1093/gigascience/gix032 (Academic article)
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn et al.. 2017, GigaScience. https://doi.org/10.1093/gigascience/gix032 (Academic article)
High number of kinome-mutations in non-small cell lung cancer is associated with reduced immune response and poor relapse-free survival. Helland, Åslaug; Brustugun, Odd Terje; Nakken, Sigve; Halvorsen, Ann Rita; Dønnem, Tom; Bremnes, Roy M.; Busund, Lill-Tove; Sun, Jinchang; Lorenz, Susanne; Solberg, Steinar et al.. 2017, International Journal of Cancer. https://doi.org/10.1002/ijc.30726 (Academic article)
High number of kinome-mutations in non-small cell lung cancer is associated with reduced immune response and poor relapse-free survival. Helland, Åslaug; Brustugun, Odd Terje; Nakken, Sigve; Halvorsen, Ann Rita; Dønnem, Tom; Bremnes, Roy M.; Busund, Lill-Tove; Sun, Jinchang; Lorenz, Susanne; Solberg, Steinar et al.. 2017, International Journal of Cancer. https://doi.org/10.1002/ijc.30726 (Academic article)
High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease. Roy, Bishnudeo; Neumann, Ralf Stefan; Snir, Omri; Iversen, Rasmus; Sandve, Geir Kjetil; Lundin, Knut Erik Aslaksen & Sollid, Ludvig Magne. 2017, Journal of Immunology. https://doi.org/10.4049/jimmunol.1700169 (Academic article)
High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease. Roy, Bishnudeo; Neumann, Ralf Stefan; Snir, Omri; Iversen, Rasmus; Sandve, Geir Kjetil; Lundin, Knut Erik Aslaksen & Sollid, Ludvig Magne. 2017, Journal of Immunology. https://doi.org/10.4049/jimmunol.1700169 (Academic article)
HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization. Meisal, Roger; Rounge, Trine Ballestad; Christiansen, Irene Kraus; Eieland, Alexander Kirkeby; Worren, Merete Molton; Molden, Tor; Kommedal, Øyvind; Hovig, Eivind; Leegaard, Truls Michael & Ambur, Ole Herman. 2017, PLOS ONE. https://doi.org/10.1371/journal.pone.0169074 (Academic article)
HPV Genotyping of Modified General Primer-Amplicons Is More Analytically Sensitive and Specific by Sequencing than by Hybridization. Meisal, Roger; Rounge, Trine Ballestad; Christiansen, Irene Kraus; Eieland, Alexander Kirkeby; Worren, Merete Molton; Molden, Tor; Kommedal, Øyvind; Hovig, Eivind; Leegaard, Truls Michael & Ambur, Ole Herman. 2017, PLOS ONE. https://doi.org/10.1371/journal.pone.0169074 (Academic article)
Implementing precision cancer medicine in the public health services of Norway: the diagnostic infrastructure and a cost estimate. Ree, Anne Hansen; Russnes, Hege Elisabeth Giercksky; Heinrich, Daniel; Dueland, Svein; Pedersen, Kjetil Boye; Nygaard, Vigdis; Silwal-Pandit, Laxmi; Østrup, Olga; Hovig, Eivind; Nygaard, Vegard et al.. 2017, ESMO Open. https://doi.org/10.1136/esmoopen-2017-000158 (Academic article)
Implementing precision cancer medicine in the public health services of Norway: the diagnostic infrastructure and a cost estimate. Ree, Anne Hansen; Russnes, Hege Elisabeth Giercksky; Heinrich, Daniel; Dueland, Svein; Pedersen, Kjetil Boye; Nygaard, Vigdis; Silwal-Pandit, Laxmi; Østrup, Olga; Hovig, Eivind; Nygaard, Vegard et al.. 2017, ESMO Open. https://doi.org/10.1136/esmoopen-2017-000158 (Academic article)
Incidence of and survival after subsequent cancers in carriers of pathogenic MMR variants with previous cancer: A report from the prospective Lynch syndrome database. Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D. Gareth; Lindblom, Annika; MacRae, Finlay; Blanco, Ignacio; Sijmons, Rolf et al.. 2017, Gut. https://doi.org/10.1136/gutjnl-2016-311403 (Academic article)
Incidence of and survival after subsequent cancers in carriers of pathogenic MMR variants with previous cancer: A report from the prospective Lynch syndrome database. Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D. Gareth; Lindblom, Annika; MacRae, Finlay; Blanco, Ignacio; Sijmons, Rolf et al.. 2017, Gut. https://doi.org/10.1136/gutjnl-2016-311403 (Academic article)
Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome. Aure, Miriam Ragle; Vitelli, Valeria; Jernström, Sandra Johanna; Kumar, Surendra; Krohn, Marit; Due, Eldri Undlien; Haukaas, Tonje Husby; Leivonen, Suvi-Katri; Vollan, Hans Kristian Moen; Luders, Torben et al.. 2017, Breast Cancer Research. https://doi.org/10.1186/s13058-017-0812-y (Academic article)
Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome. Aure, Miriam Ragle; Vitelli, Valeria; Jernström, Sandra Johanna; Kumar, Surendra; Krohn, Marit; Due, Eldri Undlien; Haukaas, Tonje Husby; Leivonen, Suvi-Katri; Vollan, Hans Kristian Moen; Luders, Torben et al.. 2017, Breast Cancer Research. https://doi.org/10.1186/s13058-017-0812-y (Academic article)
Long-term outcome for patients with early stage marginal zone lymphoma and mantle cell lymphoma. Barzenje, Dlawer Abdulla; Holte, Harald; Fosså, Alexander; Ghanima, Waleed Khalid; Liestøl, Knut; Delabie, Jan & Kolstad, Arne. 2017, Leukemia and Lymphoma. https://doi.org/10.1080/10428194.2016.1204653 (Academic article)
Long-term outcome for patients with early stage marginal zone lymphoma and mantle cell lymphoma. Barzenje, Dlawer Abdulla; Holte, Harald; Fosså, Alexander; Ghanima, Waleed Khalid; Liestøl, Knut; Delabie, Jan & Kolstad, Arne. 2017, Leukemia and Lymphoma. https://doi.org/10.1080/10428194.2016.1204653 (Academic article)
Long-term predictors of stroke in healthy middle-aged men. Prestgaard, Erik Edvard; Hodnesdal, Christian; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind. 2017, International Journal of Stroke. https://doi.org/10.1177/1747493017730760 (Academic article)
Long-term predictors of stroke in healthy middle-aged men. Prestgaard, Erik Edvard; Hodnesdal, Christian; Engeseth, Kristian; Erikssen, Jan Emil; Bodegard, Johan; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre; Grundvold, Irene & Berge, Eivind. 2017, International Journal of Stroke. https://doi.org/10.1177/1747493017730760 (Academic article)
Mechanisms of ECG signs in chronic obstructive pulmonary disease. Larssen, Marte Strømsnes; Steine, Kjetil; Mykland Hilde, Janne; Skjørten, Ingunn; Hodnesdal, Christian; Liestøl, Knut & Gjesdal, Knut. 2017, Open heart. https://doi.org/10.1136/openhrt-2016-000552 (Academic article)
Mechanisms of ECG signs in chronic obstructive pulmonary disease. Larssen, Marte Strømsnes; Steine, Kjetil; Mykland Hilde, Janne; Skjørten, Ingunn; Hodnesdal, Christian; Liestøl, Knut & Gjesdal, Knut. 2017, Open heart. https://doi.org/10.1136/openhrt-2016-000552 (Academic article)
Neuronify: An educational simulator for neural circuits. Dragly, Svenn-Arne; Mobarhan, Milad; Solbrå, Andreas Våvang; Tennøe, Simen; Hafreager, Anders; Malthe-Sørenssen, Anders; Fyhn, Marianne; Hafting, Torkel & Einevoll, Gaute. 2017, eNeuro. https://doi.org/10.1523/ENEURO.0022-17.2017 (Academic article)
Neuronify: An educational simulator for neural circuits. Dragly, Svenn-Arne; Mobarhan, Milad; Solbrå, Andreas Våvang; Tennøe, Simen; Hafreager, Anders; Malthe-Sørenssen, Anders; Fyhn, Marianne; Hafting, Torkel & Einevoll, Gaute. 2017, eNeuro. https://doi.org/10.1523/ENEURO.0022-17.2017 (Academic article)
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. Khelik, Ksenia; Lagesen, Karin; Sandve, Geir Kjetil; Rognes, Torbjørn & Nederbragt, Alexander Johan. 2017, BMC Bioinformatics. https://doi.org/10.1186/s12859-017-1748-z (Academic article)
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. Khelik, Ksenia; Lagesen, Karin; Sandve, Geir Kjetil; Rognes, Torbjørn & Nederbragt, Alexander Johan. 2017, BMC Bioinformatics. https://doi.org/10.1186/s12859-017-1748-z (Academic article)
Our genes, our selves: hereditary breast cancer and biological citizenship in Norway. Møller, Pål & Hovig, Eivind. 2017, Medicine, Health care and Philosophy. https://doi.org/10.1007/s11019-017-9803-0 (Short communication)
Our genes, our selves: hereditary breast cancer and biological citizenship in Norway. Møller, Pål & Hovig, Eivind. 2017, Medicine, Health care and Philosophy. https://doi.org/10.1007/s11019-017-9803-0 (Short communication)
Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R et al.. 2017, Nature Communications. https://doi.org/10.1038/s41467-017-01355-0 (Academic article)
Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Cheng, Jiqiu; Demeulemeester, Jonas; Wedge, David C.; Vollan, Hans Kristian Moen; Pitt, Jason; Russnes, Hege Elisabeth Giercksky; Pandey, Bina P.; Nilsen, Gro; Nord, Silje; Bignell, Graham R et al.. 2017, Nature Communications. https://doi.org/10.1038/s41467-017-01355-0 (Academic article)
Patterns of constitutively phosphorylated kinases in B cells are associated with disease severity in common variable immunodeficiency. Taraldsrud, Eli; Aukrust, Pål; Jørgensen, Silje Fjellgård; Lingjærde, Ole Christian; Olweus, Johanna; Myklebust, June & Fevang, Børre. 2017, Clinical Immunology. https://doi.org/10.1016/j.clim.2016.11.014 (Academic article)
Patterns of constitutively phosphorylated kinases in B cells are associated with disease severity in common variable immunodeficiency. Taraldsrud, Eli; Aukrust, Pål; Jørgensen, Silje Fjellgård; Lingjærde, Ole Christian; Olweus, Johanna; Myklebust, June & Fevang, Børre. 2017, Clinical Immunology. https://doi.org/10.1016/j.clim.2016.11.014 (Academic article)
Potentially pathogenic germline CHEK2 c.319+2T>A among multiple early-onset cancer families. Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål et al.. 2017, Familial Cancer. https://doi.org/10.1007/s10689-017-0011-0 (Academic article)
Potentially pathogenic germline CHEK2 c.319+2T>A among multiple early-onset cancer families. Dominguez Valentin, Mev; Nakken, Sigve; Tubeuf, Hélène; Vodak, Daniel; Ekstrøm, Per Olaf; Nissen, Anke M.; Morak, Monika; Holinski-Feder, Elke; Martins, Alexandra; Møller, Pål et al.. 2017, Familial Cancer. https://doi.org/10.1007/s10689-017-0011-0 (Academic article)
T cells expressing checkpoint receptor TIGIT are enriched in follicular lymphoma tumors and characterized by reversible suppression of T-cell receptor signaling. Josefsson, Sarah Elisabet Göthberg; Huse, Kanutte; Kolstad, Arne; Beiske, Klaus; Pende, Daniela; Steen, Chloe Beate; Inderberg, Else Marit ; Lingjærde, Ole Christian; Østenstad, Bjørn; Smeland, Erlend B et al.. 2017, Clinical Cancer Research. https://doi.org/10.1158/1078-0432.CCR-17-2337 (Academic article)
T cells expressing checkpoint receptor TIGIT are enriched in follicular lymphoma tumors and characterized by reversible suppression of T-cell receptor signaling. Josefsson, Sarah Elisabet Göthberg; Huse, Kanutte; Kolstad, Arne; Beiske, Klaus; Pende, Daniela; Steen, Chloe Beate; Inderberg, Else Marit ; Lingjærde, Ole Christian; Østenstad, Bjørn; Smeland, Erlend B et al.. 2017, Clinical Cancer Research. https://doi.org/10.1158/1078-0432.CCR-17-2337 (Academic article)
The BRCA2 variant c.68-7 T>A is associated with breast cancer. Møller, Pål & Hovig, Eivind. 2017, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-017-0080-y (Academic article)
The BRCA2 variant c.68-7 T>A is associated with breast cancer. Møller, Pål & Hovig, Eivind. 2017, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-017-0080-y (Academic article)
The longitudinal transcriptional response to neoadjuvant chemotherapy with and without bevacizumab in breast cancer. Silwal-Pandit, Laxmi; Nord, Silje; Gythfeldt, Hedda; Møller, Elen Kristine; Fleischer, Thomas; Rødland, Einar Andreas; Krohn, Marit; Borgen, Elin; Garred, Øystein; Olsen, Tone et al.. 2017, Clinical Cancer Research. https://doi.org/10.1158/1078-0432.CCR-17-0160 (Academic article)
The longitudinal transcriptional response to neoadjuvant chemotherapy with and without bevacizumab in breast cancer. Silwal-Pandit, Laxmi; Nord, Silje; Gythfeldt, Hedda; Møller, Elen Kristine; Fleischer, Thomas; Rødland, Einar Andreas; Krohn, Marit; Borgen, Elin; Garred, Øystein; Olsen, Tone et al.. 2017, Clinical Cancer Research. https://doi.org/10.1158/1078-0432.CCR-17-0160 (Academic article)
The rainfall plot: Its motivation, characteristics and pitfalls. Domanska, Diana Ewa; Vodak, Daniel; Christin, Lund-Andersen; Salvatore, Stefania; Hovig, Eivind & Sandve, Geir Kjetil. 2017, BMC Bioinformatics. https://doi.org/10.1186/s12859-017-1679-8 (Academic article)
The rainfall plot: Its motivation, characteristics and pitfalls. Domanska, Diana Ewa; Vodak, Daniel; Christin, Lund-Andersen; Salvatore, Stefania; Hovig, Eivind & Sandve, Geir Kjetil. 2017, BMC Bioinformatics. https://doi.org/10.1186/s12859-017-1679-8 (Academic article)
Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B. et al.. 2017, Scientific Reports. https://doi.org/10.1038/s41598-017-07314-5 (Academic article)
Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B. et al.. 2017, Scientific Reports. https://doi.org/10.1038/s41598-017-07314-5 (Academic article)
Use of liquid biopsies to monitor disease progression in a sarcoma patient: a case report. Namløs, Heidi Maria; Zaikova, Olga; Bjerkehagen, Bodil; Vodak, Daniel; Hovig, Johannes Eivind; Myklebost, Ola; Pedersen, Kjetil Boye & Meza, Leonardo Zepeda. 2017, BMC Cancer. https://doi.org/10.1186/s12885-016-2992-8 (Academic article)
Use of liquid biopsies to monitor disease progression in a sarcoma patient: a case report. Namløs, Heidi Maria; Zaikova, Olga; Bjerkehagen, Bodil; Vodak, Daniel; Hovig, Johannes Eivind; Myklebost, Ola; Pedersen, Kjetil Boye & Meza, Leonardo Zepeda. 2017, BMC Cancer. https://doi.org/10.1186/s12885-016-2992-8 (Academic article)
2016
A comparison between wastewater-based drug data and an illicit drug use survey in a selected community. van Wel, Janelle H.P.; Kinyua, Juliet; van Nuijs, Alexander L.N.; Salvatore, Stefania; Bramness, Jørgen Gustav; Covaci, Adrian & van Hal, Guido. 2016, International journal of drug policy. https://doi.org/10.1016/j.drugpo.2016.04.003 (Academic article)A comparison between wastewater-based drug data and an illicit drug use survey in a selected community. van Wel, Janelle H.P.; Kinyua, Juliet; van Nuijs, Alexander L.N.; Salvatore, Stefania; Bramness, Jørgen Gustav; Covaci, Adrian & van Hal, Guido. 2016, International journal of drug policy. https://doi.org/10.1016/j.drugpo.2016.04.003 (Academic article)
A nuanced picture of illicit drug use in 17 Italian cities through functional principal component analysis of temporal wastewater data. Salvatore, Stefania; Frøslie, Kathrine Frey; Røislien, Jo; Zuccato, Ettore; Castiglioni, Sara & Bramness, Jørgen Gustav. 2016, Journal of Public Health (Berlin). https://doi.org/10.1007/s10389-016-0717-8 (Academic article)
A nuanced picture of illicit drug use in 17 Italian cities through functional principal component analysis of temporal wastewater data. Salvatore, Stefania; Frøslie, Kathrine Frey; Røislien, Jo; Zuccato, Ettore; Castiglioni, Sara & Bramness, Jørgen Gustav. 2016, Journal of Public Health (Berlin). https://doi.org/10.1007/s10389-016-0717-8 (Academic article)
A systematic comparison of copy number alterations in four types of female cancer. Kaveh, Fatemeh; Baumbusch, Lars Oliver; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian; Edvardsen, Hege; Kristensen, Vessela N. & Solvang, Hiroko Kato. 2016, BMC Cancer. https://doi.org/10.1186/s12885-016-2899-4 (Academic article)
A systematic comparison of copy number alterations in four types of female cancer. Kaveh, Fatemeh; Baumbusch, Lars Oliver; Nebdal, Daniel J.H.; Børresen-Dale, Anne-Lise; Lingjærde, Ole Christian; Edvardsen, Hege; Kristensen, Vessela N. & Solvang, Hiroko Kato. 2016, BMC Cancer. https://doi.org/10.1186/s12885-016-2899-4 (Academic article)
AGXT and ERCC2 polymorphisms are associated with clinical outcome in metastatic colorectal cancer patients treated with 5-FU/oxaliplatin. Kjersem, Janne Beathe; Thomsen, Maria; Guren, Tormod Kyrre; Hamfjord, Julian; Carlsson, G; Gustavsson, B.; Ikdahl, Tone; Indrebø, Gunnar; Pfeiffer, P; Lingjærde, Ole Christian et al.. 2016, The Pharmacogenomics Journal. https://doi.org/10.1038/tpj.2015.54 (Academic article)
AGXT and ERCC2 polymorphisms are associated with clinical outcome in metastatic colorectal cancer patients treated with 5-FU/oxaliplatin. Kjersem, Janne Beathe; Thomsen, Maria; Guren, Tormod Kyrre; Hamfjord, Julian; Carlsson, G; Gustavsson, B.; Ikdahl, Tone; Indrebø, Gunnar; Pfeiffer, P; Lingjærde, Ole Christian et al.. 2016, The Pharmacogenomics Journal. https://doi.org/10.1038/tpj.2015.54 (Academic article)
ALIX and ESCRT-I/II function as parallel ESCRT-III recruiters in cytokinetic abscission. Christ, Liliane Florence; Wenzel, Eva; Liestøl, Knut; Raiborg, Camilla; Campsteijn, Coen & Stenmark, Harald Alfred. 2016, Journal of Cell Biology. https://doi.org/10.1083/jcb.201507009 (Academic article)
ALIX and ESCRT-I/II function as parallel ESCRT-III recruiters in cytokinetic abscission. Christ, Liliane Florence; Wenzel, Eva; Liestøl, Knut; Raiborg, Camilla; Campsteijn, Coen & Stenmark, Harald Alfred. 2016, Journal of Cell Biology. https://doi.org/10.1083/jcb.201507009 (Academic article)
Changes in Chromatin Structure in Curettage Specimens Identifies High-Risk Patients in Endometrial Cancer. Hveem, Tarjei Sveinsgjerd; Njølstad, Tormund Salvesen; Nielsen, Birgitte; Syvertsen, Rolf Anders; Nesheim, John Arne; Kjæreng, Marna Lill; Kildal, Wanja; Pradhan, Manohar; Marcickiewicz, Janusz; Tingulstad, Solveig et al.. 2016, Cancer Epidemiology, Biomarkers and Prevention. https://doi.org/10.1158/1055-9965.EPI-16-0215 (Academic article)
Changes in Chromatin Structure in Curettage Specimens Identifies High-Risk Patients in Endometrial Cancer. Hveem, Tarjei Sveinsgjerd; Njølstad, Tormund Salvesen; Nielsen, Birgitte; Syvertsen, Rolf Anders; Nesheim, John Arne; Kjæreng, Marna Lill; Kildal, Wanja; Pradhan, Manohar; Marcickiewicz, Janusz; Tingulstad, Solveig et al.. 2016, Cancer Epidemiology, Biomarkers and Prevention. https://doi.org/10.1158/1055-9965.EPI-16-0215 (Academic article)
Chromatin changes predict recurrence after radical prostatectomy. Hveem, Tarjei Sveinsgjerd; Kleppe, Andreas; Vlatkovic, Ljiljana; Ersvær, Elin; Wæhre, Haakon; Nielsen, Birgitte; Kjær, Marte Avranden; Pradhan, Manohar; Syvertsen, Rolf Anders; Nesheim, John Arne et al.. 2016, British Journal of Cancer. https://doi.org/10.1038/bjc.2016.96 (Academic article)
Chromatin changes predict recurrence after radical prostatectomy. Hveem, Tarjei Sveinsgjerd; Kleppe, Andreas; Vlatkovic, Ljiljana; Ersvær, Elin; Wæhre, Haakon; Nielsen, Birgitte; Kjær, Marte Avranden; Pradhan, Manohar; Syvertsen, Rolf Anders; Nesheim, John Arne et al.. 2016, British Journal of Cancer. https://doi.org/10.1038/bjc.2016.96 (Academic article)
cnvScan: A CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data. Samarakoon, Pubudu Saneth; Sorte, Hanne Sørmo; Stray-Pedersen, Asbjørg; Rødningen, Olaug Kristin; Rognes, Torbjørn & Lyle, Robert. 2016, BMC Genomics. https://doi.org/10.1186/s12864-016-2374-2 (Academic article)
cnvScan: A CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data. Samarakoon, Pubudu Saneth; Sorte, Hanne Sørmo; Stray-Pedersen, Asbjørg; Rødningen, Olaug Kristin; Rognes, Torbjørn & Lyle, Robert. 2016, BMC Genomics. https://doi.org/10.1186/s12864-016-2374-2 (Academic article)
Comparison of pharmaceutical, illicit drug, alcohol, nicotine and caffeine levels in wastewater with sale, seizure and consumption data for 8 European cities. Baz-Lomba, Jose Antonio; Salvatore, Stefania; Gracia-Lor, Emma; Bade, Richard; Castiglioni, Sara; Castrignanò, Erika; Causanilles, Ana; Hernandez, Félix; Kasprzyk-Hordern, Barbara; Kinyua, Juliet et al.. 2016, BMC Public Health. https://doi.org/10.1186/s12889-016-3686-5 (Academic article)
Comparison of pharmaceutical, illicit drug, alcohol, nicotine and caffeine levels in wastewater with sale, seizure and consumption data for 8 European cities. Baz-Lomba, Jose Antonio; Salvatore, Stefania; Gracia-Lor, Emma; Bade, Richard; Castiglioni, Sara; Castrignanò, Erika; Causanilles, Ana; Hernandez, Félix; Kasprzyk-Hordern, Barbara; Kinyua, Juliet et al.. 2016, BMC Public Health. https://doi.org/10.1186/s12889-016-3686-5 (Academic article)
Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. Sandhu, Vandana; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Skrede, Martina; Hamfjord, Julian; Larsen, Astrid Marie; Buanes, Trond; Dube, Gugu; Kale, MM; Sawant, S et al.. 2016, Molecular Oncology. https://doi.org/10.1016/j.molonc.2015.10.011 (Academic article)
Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. Sandhu, Vandana; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Skrede, Martina; Hamfjord, Julian; Larsen, Astrid Marie; Buanes, Trond; Dube, Gugu; Kale, MM; Sawant, S et al.. 2016, Molecular Oncology. https://doi.org/10.1016/j.molonc.2015.10.011 (Academic article)
Experimental factors affecting the robustness of DNA methylation analysis. Pharo, Heidi Dietrichson; Honne, Hilde; Vedeld, Hege Marie; Dahl, Christina; Andresen, Kim; Liestøl, Knut; Jeanmougin, Marine; Guldberg, Per & Lind, Guro Elisabeth. 2016, Scientific Reports. https://doi.org/10.1038/srep33936 (Academic article)
Experimental factors affecting the robustness of DNA methylation analysis. Pharo, Heidi Dietrichson; Honne, Hilde; Vedeld, Hege Marie; Dahl, Christina; Andresen, Kim; Liestøl, Knut; Jeanmougin, Marine; Guldberg, Per & Lind, Guro Elisabeth. 2016, Scientific Reports. https://doi.org/10.1038/srep33936 (Academic article)
Exploring functional data analysis and wavelet principal component analysis on ecstasy (MDMA) wastewater data. Salvatore, Stefania; Bramness, Jørgen Gustav & Røislien, Jo. 2016, BMC Medical Research Methodology. https://doi.org/10.1186/s12874-016-0179-2 (Academic article)
Exploring functional data analysis and wavelet principal component analysis on ecstasy (MDMA) wastewater data. Salvatore, Stefania; Bramness, Jørgen Gustav & Røislien, Jo. 2016, BMC Medical Research Methodology. https://doi.org/10.1186/s12874-016-0179-2 (Academic article)
Galaxy Portal: Interacting with the galaxy platform through mobile devices. Børnich, Claus; Grytten, Ivar; Hovig, Johannes Eivind; Paulsen, Jonas; Cech, Martin & Sandve, Geir Kjetil. 2016, Bioinformatics. https://doi.org/10.1093/bioinformatics/btw042 (Academic article)
Galaxy Portal: Interacting with the galaxy platform through mobile devices. Børnich, Claus; Grytten, Ivar; Hovig, Johannes Eivind; Paulsen, Jonas; Cech, Martin & Sandve, Geir Kjetil. 2016, Bioinformatics. https://doi.org/10.1093/bioinformatics/btw042 (Academic article)
Handling high-dimensional data in air pollution forecasting tasks. Domanska, Diana Ewa & Lukasik, Szymon. 2016, Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2016.04.007 (Academic article)
Handling high-dimensional data in air pollution forecasting tasks. Domanska, Diana Ewa & Lukasik, Szymon. 2016, Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2016.04.007 (Academic article)
Heart rate reserve predicts cardiovascular death among physically unfit but otherwise healthy middle-aged men: a 35-year follow-up study. Engeseth, Kristian; Hodnesdal, Christian; Grundvold, Irene; Liestøl, Knut; Gjesdal, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2016, European Journal of Preventive Cardiology (EJPC). https://doi.org/10.1177/2047487314553202 (Academic article)
Heart rate reserve predicts cardiovascular death among physically unfit but otherwise healthy middle-aged men: a 35-year follow-up study. Engeseth, Kristian; Hodnesdal, Christian; Grundvold, Irene; Liestøl, Knut; Gjesdal, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2016, European Journal of Preventive Cardiology (EJPC). https://doi.org/10.1177/2047487314553202 (Academic article)
Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization. Di Stefano, Marco; Paulsen, Jonas; Lien, Tonje Gulbrandsen; Hovig, Johannes Eivind & Micheletti, Cristian. 2016, Scientific Reports. https://doi.org/10.1038/srep35985 (Academic article)
Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization. Di Stefano, Marco; Paulsen, Jonas; Lien, Tonje Gulbrandsen; Hovig, Johannes Eivind & Micheletti, Cristian. 2016, Scientific Reports. https://doi.org/10.1038/srep35985 (Academic article)
HS1BP3 negatively regulates autophagy by modulation of phosphatidic acid levels. Holland, Petter; Knævelsrud, Helene; Søreng, Kristiane; Mathai, Benan John; Lystad, Alf Håkon; Pankiv, Serhiy; Bjørndal, Gunnveig Toft; Schultz, Sebastian; Lobert, Viola; Chan, Robin B et al.. 2016, Nature Communications. https://doi.org/10.1038/ncomms13889 (Academic article)
HS1BP3 negatively regulates autophagy by modulation of phosphatidic acid levels. Holland, Petter; Knævelsrud, Helene; Søreng, Kristiane; Mathai, Benan John; Lystad, Alf Håkon; Pankiv, Serhiy; Bjørndal, Gunnveig Toft; Schultz, Sebastian; Lobert, Viola; Chan, Robin B et al.. 2016, Nature Communications. https://doi.org/10.1038/ncomms13889 (Academic article)
Incorrect results in software engineering experiments: How to improve research practices. Jørgensen, Magne; Dybå, Tore; Liestøl, Knut & Sjøberg, Dag. 2016, Journal of Systems and Software. https://doi.org/10.1016/j.jss.2015.03.065 (Academic article)
Incorrect results in software engineering experiments: How to improve research practices. Jørgensen, Magne; Dybå, Tore; Liestøl, Knut & Sjøberg, Dag. 2016, Journal of Systems and Software. https://doi.org/10.1016/j.jss.2015.03.065 (Academic article)
Interaction with epsin 1 regulates the constitutive clathrin-dependent internalization of ErbB3. Szymanska, Monika; Fosdahl, Anne-Marthe; Raiborg, Camilla; Dietrich, Markus; Liestøl, Knut; Stang, Espen & Bertelsen, Vibeke. 2016, BBA - Molecular Cell Research. https://doi.org/10.1016/j.bbamcr.2016.03.011 (Academic article)
Interaction with epsin 1 regulates the constitutive clathrin-dependent internalization of ErbB3. Szymanska, Monika; Fosdahl, Anne-Marthe; Raiborg, Camilla; Dietrich, Markus; Liestøl, Knut; Stang, Espen & Bertelsen, Vibeke. 2016, BBA - Molecular Cell Research. https://doi.org/10.1016/j.bbamcr.2016.03.011 (Academic article)
Intra-patient inter-metastatic genetic heterogeneity in colorectal cancer as a key determinant of survival after curative liver resection. Sveen, Anita; Løes, Inger Marie; Alagaratnam, Sharmini; Nilsen, Gro; Høland, Maren; Lingjærde, Ole Christian; Sorbye, Halfdan; Berg, Kaja Christine Graue; Horn, Arild; Angelsen, Jon-Helge et al.. 2016, PLoS Genetics. https://doi.org/10.1371/journal.pgen.1006225 (Academic article)
Intra-patient inter-metastatic genetic heterogeneity in colorectal cancer as a key determinant of survival after curative liver resection. Sveen, Anita; Løes, Inger Marie; Alagaratnam, Sharmini; Nilsen, Gro; Høland, Maren; Lingjærde, Ole Christian; Sorbye, Halfdan; Berg, Kaja Christine Graue; Horn, Arild; Angelsen, Jon-Helge et al.. 2016, PLoS Genetics. https://doi.org/10.1371/journal.pgen.1006225 (Academic article)
Investigation of agreement between wastewater-based epidemiology and survey data on alcohol and nicotine use in a community. van Wel, Janelle H.P.; Garcia-Lor, Emma; van Nuijs, Alexander L.N.; Kinyua, Juliet; Salvatore, Stefania; Castiglioni, Sara; Bramness, Jørgen Gustav; Covaci, Adrian & van Hal, Guido. 2016, Drug and Alcohol Dependence. https://doi.org/10.1016/j.drugalcdep.2016.03.002 (Academic article)
Investigation of agreement between wastewater-based epidemiology and survey data on alcohol and nicotine use in a community. van Wel, Janelle H.P.; Garcia-Lor, Emma; van Nuijs, Alexander L.N.; Kinyua, Juliet; Salvatore, Stefania; Castiglioni, Sara; Bramness, Jørgen Gustav; Covaci, Adrian & van Hal, Guido. 2016, Drug and Alcohol Dependence. https://doi.org/10.1016/j.drugalcdep.2016.03.002 (Academic article)
Landscape of somatic mutations in 560 breast cancer whole-genome sequences. Nik-Zainal, Serena; Davies, Helen; Staaf, Johan; Ramakrishna, Manasa; Glodzik, Dominik; Zou, Xueqing; Martincorena, Inigo; Alexandrov, Ludmil B.; Martin, Sancha; Wedge, David C. et al.. 2016, Nature. https://doi.org/10.1038/nature17676 (Academic article)
Landscape of somatic mutations in 560 breast cancer whole-genome sequences. Nik-Zainal, Serena; Davies, Helen; Staaf, Johan; Ramakrishna, Manasa; Glodzik, Dominik; Zou, Xueqing; Martincorena, Inigo; Alexandrov, Ludmil B.; Martin, Sancha; Wedge, David C. et al.. 2016, Nature. https://doi.org/10.1038/nature17676 (Academic article)
LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer. Sas-Chen, Aldema; Aure, Miriam Ragle; Leibovich, Limor; Carvalho, Silvia; Enuka, Yehoshua; Körner, Cindy; Polycarpou-Schwarz, Maria; Lavi, Sara; Nevo, Nava; Kuznetsov, Yuri et al.. 2016, EMBO Molecular Medicine. https://doi.org/10.15252/emmm.201606198 (Academic article)
LIMT is a novel metastasis inhibiting lncRNA suppressed by EGF and downregulated in aggressive breast cancer. Sas-Chen, Aldema; Aure, Miriam Ragle; Leibovich, Limor; Carvalho, Silvia; Enuka, Yehoshua; Körner, Cindy; Polycarpou-Schwarz, Maria; Lavi, Sara; Nevo, Nava; Kuznetsov, Yuri et al.. 2016, EMBO Molecular Medicine. https://doi.org/10.15252/emmm.201606198 (Academic article)
Metabolic clusters of breast cancer in relation to gene- and protein expression subtypes. Haukaas, Tonje Husby; Euceda, Leslie R.; Giskeødegård, Guro F.; Lamichhane, Santosh; Krohn, Marit; Jernström, Sandra Johanna; Aure, Miriam Ragle; Lingjærde, Ole Christian; Schlichting, Ellen; Garred, Øystein et al.. 2016, Cancer & Metabolism. https://doi.org/10.1186/s40170-016-0152-x (Academic article)
Metabolic clusters of breast cancer in relation to gene- and protein expression subtypes. Haukaas, Tonje Husby; Euceda, Leslie R.; Giskeødegård, Guro F.; Lamichhane, Santosh; Krohn, Marit; Jernström, Sandra Johanna; Aure, Miriam Ragle; Lingjærde, Ole Christian; Schlichting, Ellen; Garred, Øystein et al.. 2016, Cancer & Metabolism. https://doi.org/10.1186/s40170-016-0152-x (Academic article)
Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses. Nygaard, Vegard; Rødland, Einar Andreas & Hovig, Johannes Eivind. 2016, Biostatistics. https://doi.org/10.1093/biostatistics/kxv027 (Academic article)
Methods that remove batch effects while retaining group differences may lead to exaggerated confidence in downstream analyses. Nygaard, Vegard; Rødland, Einar Andreas & Hovig, Johannes Eivind. 2016, Biostatistics. https://doi.org/10.1093/biostatistics/kxv027 (Academic article)
MITF depletion elevates expression levels of ERBB3 receptor and its cognate ligand NRG1-beta in melanoma. Alver, Tine Norman; Lavelle, Timothy J; Longva, Ane Sager; Øy, Geir Frode; Hovig, Johannes Eivind & Bøe, Sigurd. 2016, OncoTarget. https://doi.org/10.18632/oncotarget.10422 (Academic article)
MITF depletion elevates expression levels of ERBB3 receptor and its cognate ligand NRG1-beta in melanoma. Alver, Tine Norman; Lavelle, Timothy J; Longva, Ane Sager; Øy, Geir Frode; Hovig, Johannes Eivind & Bøe, Sigurd. 2016, OncoTarget. https://doi.org/10.18632/oncotarget.10422 (Academic article)
Naive donor NK cell repertoires associated with less leukemia relapse after allogeneic hematopoietic stem cell transplantation. Björklund, Andreas T.; Clancy, Trevor; Goodridge, Jodie; Béziat, Vivien; Schaffer, Marie; Hovig, Johannes Eivind; Ljunggren, Hans-Gustaf; Ljungman, Per T. & Malmberg, Karl-Johan. 2016, Journal of Immunology. https://doi.org/10.4049/jimmunol.1501434 (Academic article)
Naive donor NK cell repertoires associated with less leukemia relapse after allogeneic hematopoietic stem cell transplantation. Björklund, Andreas T.; Clancy, Trevor; Goodridge, Jodie; Béziat, Vivien; Schaffer, Marie; Hovig, Johannes Eivind; Ljunggren, Hans-Gustaf; Ljungman, Per T. & Malmberg, Karl-Johan. 2016, Journal of Immunology. https://doi.org/10.4049/jimmunol.1501434 (Academic article)
Open-source sequence clustering methods improve the state of the art. Kopylova, Evguenia; Navas-Molina, Jose A.; Mercier, Céline; Xu, Zhenjiang Zech; Mahé, Frédéric; He, Yan; Zhou, Hong-Wei; Rognes, Torbjørn; Caporaso, J. Gregory & Knight, Rob. 2016, mSystems. https://doi.org/10.1128/mSystems.00003-15 (Academic article)
Open-source sequence clustering methods improve the state of the art. Kopylova, Evguenia; Navas-Molina, Jose A.; Mercier, Céline; Xu, Zhenjiang Zech; Mahé, Frédéric; He, Yan; Zhou, Hong-Wei; Rognes, Torbjørn; Caporaso, J. Gregory & Knight, Rob. 2016, mSystems. https://doi.org/10.1128/mSystems.00003-15 (Academic article)
Pre-diagnostic serum levels of EGFR and ErbB2 and genetic glioma risk variants: a nested case-control study. Späth, Florentin; Andersson, Ulrika; Dahlin, Anna M; Langseth, Hilde; Hovig, Johannes Eivind; Johannesen, Tom Børge; Grankvist, Kjell; Björkblom, Benny; Wibom, Carl & Melin, Beatrice. 2016, Tumour Biology. https://doi.org/10.1007/s13277-015-4742-y (Academic article)
Pre-diagnostic serum levels of EGFR and ErbB2 and genetic glioma risk variants: a nested case-control study. Späth, Florentin; Andersson, Ulrika; Dahlin, Anna M; Langseth, Hilde; Hovig, Johannes Eivind; Johannesen, Tom Børge; Grankvist, Kjell; Björkblom, Benny; Wibom, Carl & Melin, Beatrice. 2016, Tumour Biology. https://doi.org/10.1007/s13277-015-4742-y (Academic article)
Profiling networks of distinct immune-cells in tumors. Clancy, Trevor & Hovig, Eivind. 2016, BMC Bioinformatics. https://doi.org/10.1186/s12859-016-1141-3 (Academic article)
Profiling networks of distinct immune-cells in tumors. Clancy, Trevor & Hovig, Eivind. 2016, BMC Bioinformatics. https://doi.org/10.1186/s12859-016-1141-3 (Academic article)
Subtype-specific micro-RNA expression signatures in breast cancer progression. Haakensen, Vilde Drageset; Nygaard, Vegard; Greger, Liliana; Aure, Miriam Ragle; Fromm, Bastian; Bukholm, Ida Rashida Khan; Luders, Torben; Chin, Suet-Feung; Git, Anna; Caldas, Carlos et al.. 2016, International Journal of Cancer. https://doi.org/10.1002/ijc.30142 (Academic article)
Subtype-specific micro-RNA expression signatures in breast cancer progression. Haakensen, Vilde Drageset; Nygaard, Vegard; Greger, Liliana; Aure, Miriam Ragle; Fromm, Bastian; Bukholm, Ida Rashida Khan; Luders, Torben; Chin, Suet-Feung; Git, Anna; Caldas, Carlos et al.. 2016, International Journal of Cancer. https://doi.org/10.1002/ijc.30142 (Academic article)
Temporal reduction in chronotropic index predicts risk of cardiovascular death among healthy middle-aged men: A 28-year follow-up study. Engeseth, Kristian; Hodnesdal, Christian; Grundvold, Irene; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2016, Journal of the American Heart Association (JAHA). https://doi.org/10.1161/JAHA.116.004555 (Academic article)
Temporal reduction in chronotropic index predicts risk of cardiovascular death among healthy middle-aged men: A 28-year follow-up study. Engeseth, Kristian; Hodnesdal, Christian; Grundvold, Irene; Liestøl, Knut; Gjesdal, Knut; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Bodegard, Johan & Skretteberg, Torger. 2016, Journal of the American Heart Association (JAHA). https://doi.org/10.1161/JAHA.116.004555 (Academic article)
The genomic landscape of pancreatic and periampullary adenocarcinoma. Sandhu, Vandana; Wedge, David C.; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Dentro, Stefan C.; Buanes, Trond; Skrede, Martina; Larsen, Astrid Marie; Munthe, Else; Myklebost, Ola et al.. 2016, Cancer Research. https://doi.org/10.1158/0008-5472.CAN-16-0658 (Academic article)
The genomic landscape of pancreatic and periampullary adenocarcinoma. Sandhu, Vandana; Wedge, David C.; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Dentro, Stefan C.; Buanes, Trond; Skrede, Martina; Larsen, Astrid Marie; Munthe, Else; Myklebost, Ola et al.. 2016, Cancer Research. https://doi.org/10.1158/0008-5472.CAN-16-0658 (Academic article)
The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress. Namouchi, Amine; Gomez Munoz, Marta; Frye, Stephan Alfons; Moen, Line Victoria; Rognes, Torbjørn; Tonjum, Tone & Balasingham, Seetha. 2016, BMC Genomics. https://doi.org/10.1186/s12864-016-3132-1 (Academic article)
The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress. Namouchi, Amine; Gomez Munoz, Marta; Frye, Stephan Alfons; Moen, Line Victoria; Rognes, Torbjørn; Tonjum, Tone & Balasingham, Seetha. 2016, BMC Genomics. https://doi.org/10.1186/s12864-016-3132-1 (Academic article)
The tumour microenvironment influences survival and time to transformation in follicular lymphoma in the rituximab era. Blaker, Yngvild Nuvin; Spetalen, Signe; Eide, Marianne Brodtkorb; Lingjærde, Ole Christian; Beiske, Klaus; Østenstad, Bjørn; Sander, Birgitta; Wahlin, Björn Engelbrekt; Melen, Christopher Michael; Myklebust, June et al.. 2016, British Journal of Haematology. https://doi.org/10.1111/bjh.14201 (Academic article)
The tumour microenvironment influences survival and time to transformation in follicular lymphoma in the rituximab era. Blaker, Yngvild Nuvin; Spetalen, Signe; Eide, Marianne Brodtkorb; Lingjærde, Ole Christian; Beiske, Klaus; Østenstad, Bjørn; Sander, Birgitta; Wahlin, Björn Engelbrekt; Melen, Christopher Michael; Myklebust, June et al.. 2016, British Journal of Haematology. https://doi.org/10.1111/bjh.14201 (Academic article)
TP53 mutation spectrum in smokers and never smoking lung cancer patients. Halvorsen, Ann Rita; Silwal-Pandit, Laxmi; Meza, Leonardo Zepeda; Vodak, Daniel; Vu, Phuong Ngoc Thi; Sagerup, Camilla Maria Troøien; Hovig, Johannes Eivind; Myklebost, Ola; Børresen-Dale, Anne-Lise; Brustugun, Odd Terje et al.. 2016, Frontiers in Genetics. https://doi.org/10.3389/fgene.2016.00085 (Academic article)
TP53 mutation spectrum in smokers and never smoking lung cancer patients. Halvorsen, Ann Rita; Silwal-Pandit, Laxmi; Meza, Leonardo Zepeda; Vodak, Daniel; Vu, Phuong Ngoc Thi; Sagerup, Camilla Maria Troøien; Hovig, Johannes Eivind; Myklebost, Ola; Børresen-Dale, Anne-Lise; Brustugun, Odd Terje et al.. 2016, Frontiers in Genetics. https://doi.org/10.3389/fgene.2016.00085 (Academic article)
Transcriptomic Profiling of Tumor Aggressiveness in Sporadic Nonfunctioning Pancreatic Neuroendocrine Neoplasms. Haugvik, Sven-Petter; Vodak, Daniel; Haugom, Lisbeth; Hovig, Johannes Eivind; Gladhaug, Ivar Prydz; Heim, Sverre & Micci, Francesca. 2016, Pancreas. https://doi.org/10.1097/MPA.0000000000000610 (Academic article)
Transcriptomic Profiling of Tumor Aggressiveness in Sporadic Nonfunctioning Pancreatic Neuroendocrine Neoplasms. Haugvik, Sven-Petter; Vodak, Daniel; Haugom, Lisbeth; Hovig, Johannes Eivind; Gladhaug, Ivar Prydz; Heim, Sverre & Micci, Francesca. 2016, Pancreas. https://doi.org/10.1097/MPA.0000000000000610 (Academic article)
VSEARCH: A versatile open source tool for metagenomics. Rognes, Torbjørn; Flouri, Tomáš; Nichols, Ben; Quince, Christopher & Mahé, Frédéric. 2016, PeerJ. https://doi.org/10.7717/peerj.2584 (Academic article)
VSEARCH: A versatile open source tool for metagenomics. Rognes, Torbjørn; Flouri, Tomáš; Nichols, Ben; Quince, Christopher & Mahé, Frédéric. 2016, PeerJ. https://doi.org/10.7717/peerj.2584 (Academic article)
2015
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing. Alioto, Tyler S.; Buchhalter, Ivo; Derdak, Sophia; Hutter, Barbara; Eldridge, Matthew D.; Hovig, Johannes Eivind; Heisler, Lawrence E.; Beck, Timothy A.; Simpson, Jared T.; Tonon, Laurie et al.. 2015, Nature Communications. https://doi.org/10.1038/ncomms10001 (Academic article)A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing. Alioto, Tyler S.; Buchhalter, Ivo; Derdak, Sophia; Hutter, Barbara; Eldridge, Matthew D.; Hovig, Johannes Eivind; Heisler, Lawrence E.; Beck, Timothy A.; Simpson, Jared T.; Tonon, Laurie et al.. 2015, Nature Communications. https://doi.org/10.1038/ncomms10001 (Academic article)
A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer. Vollan, Hans Kristian Moen; Rueda, Oscar M.; Chin, Suet-Feung; Curtis, Christina; Turashvili, Gulisa; Shah, Sohrab P.; Lingjærde, Ole Christian; Yuan, Yinyin; Ng, Charlotte K.; Dunning, Mark J. et al.. 2015, Molecular Oncology. https://doi.org/10.1016/j.molonc.2014.07.019 (Academic article)
A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer. Vollan, Hans Kristian Moen; Rueda, Oscar M.; Chin, Suet-Feung; Curtis, Christina; Turashvili, Gulisa; Shah, Sohrab P.; Lingjærde, Ole Christian; Yuan, Yinyin; Ng, Charlotte K.; Dunning, Mark J. et al.. 2015, Molecular Oncology. https://doi.org/10.1016/j.molonc.2014.07.019 (Academic article)
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Fromm, Bastian; Billipp, Tyler; Peck, Liam E.; Johansen, Morten; Tarver, James E.; King, Benjamin L.; Newcomb, James M.; Sempere, Lorenzo F.; Flatmark, Kjersti; Hovig, Johannes Eivind et al.. 2015, Annual Review of Genetics. https://doi.org/10.1146/annurev-genet-120213-092023 (Academic article)
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. Fromm, Bastian; Billipp, Tyler; Peck, Liam E.; Johansen, Morten; Tarver, James E.; King, Benjamin L.; Newcomb, James M.; Sempere, Lorenzo F.; Flatmark, Kjersti; Hovig, Johannes Eivind et al.. 2015, Annual Review of Genetics. https://doi.org/10.1146/annurev-genet-120213-092023 (Academic article)
Achievements in congenital heart defect surgery: A prospective, 40-year study of 7038 patients. Erikssen, Gunnar; Liestøl, Knut; Seem, Egil; Birkelance, Sigurce; Saatvedt, Kjell; Nilsen-Hoel, Tom; Døhlen, Gaute; Skulstad, Helge; Svennevig, Jan Ludvig; Thaulow, Erik et al.. 2015, Circulation. https://doi.org/10.1161/CIRCULATIONAHA.114.012033 (Academic article)
Achievements in congenital heart defect surgery: A prospective, 40-year study of 7038 patients. Erikssen, Gunnar; Liestøl, Knut; Seem, Egil; Birkelance, Sigurce; Saatvedt, Kjell; Nilsen-Hoel, Tom; Døhlen, Gaute; Skulstad, Helge; Svennevig, Jan Ludvig; Thaulow, Erik et al.. 2015, Circulation. https://doi.org/10.1161/CIRCULATIONAHA.114.012033 (Academic article)
ALIX and ESCRT-III Coordinately Control Cytokinetic Abscission during Germline Stem Cell Division In Vivo. Eikenes, Åsmund Husabø; Malerød, Lene; Christensen, Anette Lie; Steen, Chloe Beate; Mathieu, Juliette; Nezis, Ioannis P; Liestøl, Knut; Huynh, Jean-Rene; Stenmark, Harald & Haglund, Kaisa. 2015, PLoS Genetics. https://doi.org/10.1371/journal.pgen.1004904 (Academic article)
ALIX and ESCRT-III Coordinately Control Cytokinetic Abscission during Germline Stem Cell Division In Vivo. Eikenes, Åsmund Husabø; Malerød, Lene; Christensen, Anette Lie; Steen, Chloe Beate; Mathieu, Juliette; Nezis, Ioannis P; Liestøl, Knut; Huynh, Jean-Rene; Stenmark, Harald & Haglund, Kaisa. 2015, PLoS Genetics. https://doi.org/10.1371/journal.pgen.1004904 (Academic article)
Apolipoprotein E allelotype is associated with neuropathological findings in Alzheimer's disease. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael & Mæhlen, Jan. 2015, Virchows Archiv. https://doi.org/10.1007/s00428-015-1772-1 (Academic article)
Apolipoprotein E allelotype is associated with neuropathological findings in Alzheimer's disease. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael & Mæhlen, Jan. 2015, Virchows Archiv. https://doi.org/10.1007/s00428-015-1772-1 (Academic article)
Automated amplicon design suitable for analysis of DNA variants by melting techniques. Ekstrøm, Per Olaf; Nakken, Sigve; Johansen, Morten & Hovig, Johannes Eivind. 2015, BMC Research Notes. https://doi.org/10.1186/s13104-015-1624-8 (Academic article)
Automated amplicon design suitable for analysis of DNA variants by melting techniques. Ekstrøm, Per Olaf; Nakken, Sigve; Johansen, Morten & Hovig, Johannes Eivind. 2015, BMC Research Notes. https://doi.org/10.1186/s13104-015-1624-8 (Academic article)
Bioinformatikk - å forstå teksten. Hovig, Eivind & Rognes, Torbjørn. 2015, Gyldendal Norsk Forlag A/S. (Popular scientific chapter/article)
Bioinformatikk - å forstå teksten. Hovig, Eivind & Rognes, Torbjørn. 2015, Gyldendal Norsk Forlag A/S. (Popular scientific chapter/article)
BRAF V600E mutation in early-stage multiple myeloma: good response to broad acting drugs and no relation to prognosis. Rustad, Even Holth; Dai, Hong Yan; Hov, Håkon; Coward, Eivind; Beisvag, Vidar; Myklebost, Ola; Hovig, Johannes Eivind; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda et al.. 2015, Blood Cancer Journal. https://doi.org/10.1038/bcj.2015.24 (Academic article)
BRAF V600E mutation in early-stage multiple myeloma: good response to broad acting drugs and no relation to prognosis. Rustad, Even Holth; Dai, Hong Yan; Hov, Håkon; Coward, Eivind; Beisvag, Vidar; Myklebost, Ola; Hovig, Johannes Eivind; Nakken, Sigve; Vodak, Daniel; Meza, Leonardo Zepeda et al.. 2015, Blood Cancer Journal. https://doi.org/10.1038/bcj.2015.24 (Academic article)
c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind; Sandve, Geir Kjetil F.; Gabrielsen, Odd Stokke & Eskeland, Ragnhild. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0133280 (Academic article)
c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind; Sandve, Geir Kjetil F.; Gabrielsen, Odd Stokke & Eskeland, Ragnhild. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0133280 (Academic article)
Cancer incidence and survival in Lynch syndrome patients receiving colonoscopic and gynaecological surveillance: first report from the prospective Lynch syndrome database. Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D Gareth; Lindblom, Annika; Macrae, Finlay A.; Blanco, Ignacio; Sijmons, Rolf et al.. 2015, Gut. https://doi.org/10.1136/gutjnl-2015-309675 (Academic article)
Cancer incidence and survival in Lynch syndrome patients receiving colonoscopic and gynaecological surveillance: first report from the prospective Lynch syndrome database. Møller, Pål; Seppälä, Toni; Bernstein, Inge; Holinski-Feder, Elke; Sala, Paola; Evans, D Gareth; Lindblom, Annika; Macrae, Finlay A.; Blanco, Ignacio; Sijmons, Rolf et al.. 2015, Gut. https://doi.org/10.1136/gutjnl-2015-309675 (Academic article)
Canine Mammary Tumours Are Affected by Frequent Copy Number Aberrations, including Amplification of MYC and Loss of PTEN. Borge, Kaja Sverdrup; Nord, Silje H.; Van Loo, Peter; Lingjærde, Ole Christian; Gunnes, Gjermund; Grenaker, Grethe Irene; Solvang, Hiroko Kato; Luders, Torben; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0126371 (Academic article)
Canine Mammary Tumours Are Affected by Frequent Copy Number Aberrations, including Amplification of MYC and Loss of PTEN. Borge, Kaja Sverdrup; Nord, Silje H.; Van Loo, Peter; Lingjærde, Ole Christian; Gunnes, Gjermund; Grenaker, Grethe Irene; Solvang, Hiroko Kato; Luders, Torben; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0126371 (Academic article)
CD14 and complement crosstalk and largely mediate the transcriptional response to Escherichia coli in human whole blood as revealed by DNA microarray. Lau, Corinna; Nygård, Ståle; Fure, Hilde; Olstad, Ole Kristoffer; Holden, Marit; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0117261 (Academic article)
CD14 and complement crosstalk and largely mediate the transcriptional response to Escherichia coli in human whole blood as revealed by DNA microarray. Lau, Corinna; Nygård, Ståle; Fure, Hilde; Olstad, Ole Kristoffer; Holden, Marit; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0117261 (Academic article)
ClusTrack: Feature extraction and similarity measures for clustering of genome-wide data sets. Rydbeck, Halfdan; Sandve, Geir Kjetil F.; Ferkingstad, Egil; Simovski, Boris; Rye, Morten Beck & Hovig, Johannes Eivind. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0123261 (Academic article)
ClusTrack: Feature extraction and similarity measures for clustering of genome-wide data sets. Rydbeck, Halfdan; Sandve, Geir Kjetil F.; Ferkingstad, Egil; Simovski, Boris; Rye, Morten Beck & Hovig, Johannes Eivind. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0123261 (Academic article)
Combining MYC, BCL2 and TP53 gene and protein expression alterations improves risk stratification in diffuse large B-cell lymphoma. Fiskvik, Idun Hege; Beiske, Klaus; Delabie, Jan; Yri, Olav Erich; Spetalen, Signe; Karjalainen-Lindsberg, Marja-Liisa; Leppä, Sirpa; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2015, Leukemia and Lymphoma. https://doi.org/10.3109/10428194.2014.970550 (Academic article)
Combining MYC, BCL2 and TP53 gene and protein expression alterations improves risk stratification in diffuse large B-cell lymphoma. Fiskvik, Idun Hege; Beiske, Klaus; Delabie, Jan; Yri, Olav Erich; Spetalen, Signe; Karjalainen-Lindsberg, Marja-Liisa; Leppä, Sirpa; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2015, Leukemia and Lymphoma. https://doi.org/10.3109/10428194.2014.970550 (Academic article)
Computerized image analysis of the Ki-67 proliferation index in mantle cell lymphoma. Blaker, Yngvild Nuvin; Brodtkorb, Marianne; Maddison, John; Hveem, Tarjei Sveinsgjerd; Nesheim, John Arne; Mohn, Hans Martin; Kolstad, Arne; Geisler, Christian H.; Liestøl, Knut; Smeland, Erlend B et al.. 2015, Histopathology. https://doi.org/10.1111/his.12624 (Academic article)
Computerized image analysis of the Ki-67 proliferation index in mantle cell lymphoma. Blaker, Yngvild Nuvin; Brodtkorb, Marianne; Maddison, John; Hveem, Tarjei Sveinsgjerd; Nesheim, John Arne; Mohn, Hans Martin; Kolstad, Arne; Geisler, Christian H.; Liestøl, Knut; Smeland, Erlend B et al.. 2015, Histopathology. https://doi.org/10.1111/his.12624 (Academic article)
Discovery of recurrent mutations associated with chemo-immunotherapy relapse in diffuse large B-cell lymphoma. Wise, Jillian Frances; Nakken, Sigve; Vodak, Daniel; Trøen, Gunhild; Lingjærde, Ole Christian; Meza-Zepeda, Leonardo A; Myklebost, Ola; Beiske, Klaus; Myklebust, June Helene; Hovig, Eivind et al.. 2015, Blood. https://doi.org/10.1182/blood.v126.23.110.110 (Academic article)
Discovery of recurrent mutations associated with chemo-immunotherapy relapse in diffuse large B-cell lymphoma. Wise, Jillian Frances; Nakken, Sigve; Vodak, Daniel; Trøen, Gunhild; Lingjærde, Ole Christian; Meza-Zepeda, Leonardo A; Myklebost, Ola; Beiske, Klaus; Myklebust, June Helene; Hovig, Eivind et al.. 2015, Blood. https://doi.org/10.1182/blood.v126.23.110.110 (Academic article)
EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy. Ricigliano, Vito A. G.; Handel, Adam E; Sandve, Geir Kjetil F.; Annibali, Viviana; Ristori, Giovanni; Mechelli, Rosella; Cader, M.Zameel & Salvetti, Marco. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0119605 (Academic article)
EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy. Ricigliano, Vito A. G.; Handel, Adam E; Sandve, Geir Kjetil F.; Annibali, Viviana; Ristori, Giovanni; Mechelli, Rosella; Cader, M.Zameel & Salvetti, Marco. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0119605 (Academic article)
Gene expression profiling of Gram-negative bacteria-induced inflammation in human whole blood: The role of complement and CD14-mediated innate immune response. Lau, Corinna; Olstad, Ole Kristoffer; Holden, Marit; Nygård, Ståle; Fure, Hilde; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik. 2015, Genomics Data. https://doi.org/10.1016/j.gdata.2015.05.019 (Academic article)
Gene expression profiling of Gram-negative bacteria-induced inflammation in human whole blood: The role of complement and CD14-mediated innate immune response. Lau, Corinna; Olstad, Ole Kristoffer; Holden, Marit; Nygård, Ståle; Fure, Hilde; Lappegård, Knut Tore; Brekke, Ole Lars; Espevik, Terje; Hovig, Johannes Eivind & Mollnes, Tom Eirik. 2015, Genomics Data. https://doi.org/10.1016/j.gdata.2015.05.019 (Academic article)
Glycan-related gene expression signatures in breast cancer subtypes; relation to survival. Potapenko, Ivan Olegovich; Luders, Torben; Russnes, Hege Elisabeth Giercksky; Helland, Åslaug; Sørlie, Therese; Kristensen, Vessela N.; Nordgard, Silje H.; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise & Haakensen, Vilde Drageset. 2015, Molecular Oncology. https://doi.org/10.1016/j.molonc.2014.12.013 (Academic article)
Glycan-related gene expression signatures in breast cancer subtypes; relation to survival. Potapenko, Ivan Olegovich; Luders, Torben; Russnes, Hege Elisabeth Giercksky; Helland, Åslaug; Sørlie, Therese; Kristensen, Vessela N.; Nordgard, Silje H.; Lingjærde, Ole Christian; Børresen-Dale, Anne-Lise & Haakensen, Vilde Drageset. 2015, Molecular Oncology. https://doi.org/10.1016/j.molonc.2014.12.013 (Academic article)
In the loop: promoter-enhancer interactions and bioinformatics. Mora Ortiz, Antonio Carlos; Sandve, Geir Kjetil; Gabrielsen, Odd Stokke & Eskeland, Ragnhild. 2015, Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbv097 (Academic literature review)
In the loop: promoter-enhancer interactions and bioinformatics. Mora Ortiz, Antonio Carlos; Sandve, Geir Kjetil; Gabrielsen, Odd Stokke & Eskeland, Ragnhild. 2015, Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbv097 (Academic literature review)
Integrated analysis reveals microRNA networks coordinately expressed with key proteins in breast cancer. Aure, Miriam Ragle; Jernström, Sandra Johanna; Krohn, Marit; Vollan, Hans Kristian Moen; Due, Eldri Undlien; Rødland, Einar Andreas; Kåresen, Rolf; Ram, Prahlad T.; Lu, Yiling; Mills, Gordon B. et al.. 2015, Genome Medicine. https://doi.org/10.1186/s13073-015-0135-5 (Academic article)
Integrated analysis reveals microRNA networks coordinately expressed with key proteins in breast cancer. Aure, Miriam Ragle; Jernström, Sandra Johanna; Krohn, Marit; Vollan, Hans Kristian Moen; Due, Eldri Undlien; Rødland, Einar Andreas; Kåresen, Rolf; Ram, Prahlad T.; Lu, Yiling; Mills, Gordon B. et al.. 2015, Genome Medicine. https://doi.org/10.1186/s13073-015-0135-5 (Academic article)
Investigation of established genetic risk variants for glioma in prediagnostic samples from a population-based nested case-control study. Wibom, Carl; Späth, Florentin; Dahlin, Anna M.; Langseth, Hilde; Hovig, Johannes Eivind; Rajaraman, Preetha; Johannesen, Tom Børge; Andersson, Ulrika & Melin, Beatrice. 2015, Cancer Epidemiology, Biomarkers and Prevention. https://doi.org/10.1158/1055-9965.EPI-14-1106 (Academic article)
Investigation of established genetic risk variants for glioma in prediagnostic samples from a population-based nested case-control study. Wibom, Carl; Späth, Florentin; Dahlin, Anna M.; Langseth, Hilde; Hovig, Johannes Eivind; Rajaraman, Preetha; Johannesen, Tom Børge; Andersson, Ulrika & Melin, Beatrice. 2015, Cancer Epidemiology, Biomarkers and Prevention. https://doi.org/10.1158/1055-9965.EPI-14-1106 (Academic article)
Molecular signatures of mRNAs and miRNAs as prognostic biomarkers in pancreatobiliary and intestinal types of periampullary adenocarcinomas. Sandhu, Vandana; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Lingjærde, Ole Christian; Buanes, Trond; Dalsgaard, Astrid Marie; Skrede, Martina; Hamfjord, Julian; Haaland, Therese Kristina; Eide, Tor Jacob et al.. 2015, Molecular Oncology. https://doi.org/10.1016/j.molonc.2014.12.002 (Academic article)
Molecular signatures of mRNAs and miRNAs as prognostic biomarkers in pancreatobiliary and intestinal types of periampullary adenocarcinomas. Sandhu, Vandana; Lothe, Inger Marie Bowitz; Labori, Knut Jørgen; Lingjærde, Ole Christian; Buanes, Trond; Dalsgaard, Astrid Marie; Skrede, Martina; Hamfjord, Julian; Haaland, Therese Kristina; Eide, Tor Jacob et al.. 2015, Molecular Oncology. https://doi.org/10.1016/j.molonc.2014.12.002 (Academic article)
Monte Carlo Null Models for Genomic Data. Ferkingstad, Egil; Holden, Lars & Sandve, Geir Kjetil F.. 2015, Statistical Science. https://doi.org/10.1214/14-STS484 (Academic article)
Monte Carlo Null Models for Genomic Data. Ferkingstad, Egil; Holden, Lars & Sandve, Geir Kjetil F.. 2015, Statistical Science. https://doi.org/10.1214/14-STS484 (Academic article)
Non-homologous functions of the AlkB homologs. Ougland, Rune; Rognes, Torbjørn; Klungland, Arne & Larsen, Elisabeth. 2015, Journal of Molecular Cell Biology. https://doi.org/10.1093/jmcb/mjv029 (Academic literature review)
Non-homologous functions of the AlkB homologs. Ougland, Rune; Rognes, Torbjørn; Klungland, Arne & Larsen, Elisabeth. 2015, Journal of Molecular Cell Biology. https://doi.org/10.1093/jmcb/mjv029 (Academic literature review)
Radiotherapy compared to other strategies in the treatment of stage I/II follicular lymphoma: A study of 404 patients with a median follow-up of 15 years. Barzenje, Dlawer Abdulla; Småstuen, Milada C; Liestøl, Knut; Fosså, Alexander; Delabie, Jan; Kolstad, Arne & Holte, Harald. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0131158 (Academic article)
Radiotherapy compared to other strategies in the treatment of stage I/II follicular lymphoma: A study of 404 patients with a median follow-up of 15 years. Barzenje, Dlawer Abdulla; Småstuen, Milada C; Liestøl, Knut; Fosså, Alexander; Delabie, Jan; Kolstad, Arne & Holte, Harald. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0131158 (Academic article)
Regulator of chromosome condensation 2 identifies high-risk patients within both major phenotypes of colorectal cancer. Bruun, Jarle; Kolberg, Matthias; Ahlquist, Terje Cruickshank; Røyrvik, Ellen Christine; Nome, Torfinn; Leithe, Edward; Lind, Guro Elisabeth; Merok, Marianne Aarstad; Rognum, Torleiv Ole; Bjørkøy, Geir et al.. 2015, Clinical Cancer Research. https://doi.org/10.1158/1078-0432.CCR-14-3294 (Academic article)
Regulator of chromosome condensation 2 identifies high-risk patients within both major phenotypes of colorectal cancer. Bruun, Jarle; Kolberg, Matthias; Ahlquist, Terje Cruickshank; Røyrvik, Ellen Christine; Nome, Torfinn; Leithe, Edward; Lind, Guro Elisabeth; Merok, Marianne Aarstad; Rognum, Torleiv Ole; Bjørkøy, Geir et al.. 2015, Clinical Cancer Research. https://doi.org/10.1158/1078-0432.CCR-14-3294 (Academic article)
Serum N-glycome characterization in patients with resectable periampullary adenocarcinoma. Hamfjord, Julian; Saldova, Radka; Stockmann, Henning; Sandhu, Vandana; Lothe, Inger Marie Bowitz; Buanes, Trond; Lingjærde, Ole Christian; Labori, Knut Jørgen; Rudd, Pauline M & Kure, Elin H.. 2015, Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.5b00395 (Academic article)
Serum N-glycome characterization in patients with resectable periampullary adenocarcinoma. Hamfjord, Julian; Saldova, Radka; Stockmann, Henning; Sandhu, Vandana; Lothe, Inger Marie Bowitz; Buanes, Trond; Lingjærde, Ole Christian; Labori, Knut Jørgen; Rudd, Pauline M & Kure, Elin H.. 2015, Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.5b00395 (Academic article)
Src64 controls a novel actin network required for proper ring canal formation in the drosophila male germline. Eikenes, Åsmund Husabø; Malerød, Lene; Christensen, Anette Lie; Wegner, Catherine E Sem; Brech, Andreas; Liestøl, Knut; Stenmark, Harald Alfred & Haglund, Kaisa. 2015, Development. https://doi.org/10.1242/dev.124370 (Academic article)
Src64 controls a novel actin network required for proper ring canal formation in the drosophila male germline. Eikenes, Åsmund Husabø; Malerød, Lene; Christensen, Anette Lie; Wegner, Catherine E Sem; Brech, Andreas; Liestøl, Knut; Stenmark, Harald Alfred & Haglund, Kaisa. 2015, Development. https://doi.org/10.1242/dev.124370 (Academic article)
Structure, dynamics, and functionality of tankyrase inhibitor-induced degradasomes. Thorvaldsen, Tor Espen; Pedersen, Nina Marie; Wenzel, Eva; Schultz, Sebastian; Brech, Andreas; Liestøl, Knut; Waaler, Jo; Krauss, Stefan & Stenmark, Harald Alfred. 2015, Molecular Cancer Research. https://doi.org/10.1158/1541-7786.MCR-15-0125 (Academic article)
Structure, dynamics, and functionality of tankyrase inhibitor-induced degradasomes. Thorvaldsen, Tor Espen; Pedersen, Nina Marie; Wenzel, Eva; Schultz, Sebastian; Brech, Andreas; Liestøl, Knut; Waaler, Jo; Krauss, Stefan & Stenmark, Harald Alfred. 2015, Molecular Cancer Research. https://doi.org/10.1158/1541-7786.MCR-15-0125 (Academic article)
Swarm v2: highly-scalable and high-resolution amplicon clustering. Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah. 2015, PeerJ. https://doi.org/10.7717/peerj.1420 (Academic article)
Swarm v2: highly-scalable and high-resolution amplicon clustering. Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah. 2015, PeerJ. https://doi.org/10.7717/peerj.1420 (Academic article)
Ten modifiers of BRCA1 penetrance validated in a Norwegian series. Heramb, Cecilie; Ekstrøm, Per Olaf; Tharmaratnam, Kukatharmini; Hovig, Johannes Eivind; Møller, Pål & Mæhle, Lovise Olaug. 2015, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-015-0035-0 (Academic article)
Ten modifiers of BRCA1 penetrance validated in a Norwegian series. Heramb, Cecilie; Ekstrøm, Per Olaf; Tharmaratnam, Kukatharmini; Hovig, Johannes Eivind; Møller, Pål & Mæhle, Lovise Olaug. 2015, Hereditary Cancer in Clinical Practice. https://doi.org/10.1186/s13053-015-0035-0 (Academic article)
Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis. Kraus, Hanne Irene; Sandve, Geir Kjetil F.; Schmitz, Martina; Dürst, Matthias & Hovig, Johannes Eivind. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0119566 (Academic article)
Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis. Kraus, Hanne Irene; Sandve, Geir Kjetil F.; Schmitz, Martina; Dürst, Matthias & Hovig, Johannes Eivind. 2015, PLOS ONE. https://doi.org/10.1371/journal.pone.0119566 (Academic article)
Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway. Yang, Mingyi; Lin, Xiaolin; Rowe, Alexander D.; Rognes, Torbjørn; Eide, Lars & Bjørås, Magnar. 2015, Scientific Reports. https://doi.org/10.1038/srep17409 (Academic article)
Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway. Yang, Mingyi; Lin, Xiaolin; Rowe, Alexander D.; Rognes, Torbjørn; Eide, Lars & Bjørås, Magnar. 2015, Scientific Reports. https://doi.org/10.1038/srep17409 (Academic article)
Translocational renal cell carcinoma (t(6;11)(p21;q12) with transcription factor EB (TFEB) amplification and an integrated precision approach: A case report. Lilleby, Wolfgang; Vlatkovic, Ljiljana; Meza, Leonardo Zepeda; Revheim, Mona Elisabeth & Hovig, Johannes Eivind. 2015, Journal of Medical Case Reports. https://doi.org/10.1186/s13256-015-0749-7 (Short communication)
Translocational renal cell carcinoma (t(6;11)(p21;q12) with transcription factor EB (TFEB) amplification and an integrated precision approach: A case report. Lilleby, Wolfgang; Vlatkovic, Ljiljana; Meza, Leonardo Zepeda; Revheim, Mona Elisabeth & Hovig, Johannes Eivind. 2015, Journal of Medical Case Reports. https://doi.org/10.1186/s13256-015-0749-7 (Short communication)
Tumor expression, plasma levels and genetic polymorphisms of the coagulation inhibitor TFPI are associated with clinicopathological parameters and survival in breast cancer, in contrast to the coagulation initiator TF. Tinholt, Mari; Vollan, Hans Kristian Moen; Sahlberg, Kristine Kleivi; Jernström, Sandra Johanna; Kaveh, Fatemeh; Lingjærde, Ole Christian; Kåresen, Rolf; Sauer, Torill; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2015, Breast Cancer Research. https://doi.org/10.1186/s13058-015-0548-5 (Academic article)
Tumor expression, plasma levels and genetic polymorphisms of the coagulation inhibitor TFPI are associated with clinicopathological parameters and survival in breast cancer, in contrast to the coagulation initiator TF. Tinholt, Mari; Vollan, Hans Kristian Moen; Sahlberg, Kristine Kleivi; Jernström, Sandra Johanna; Kaveh, Fatemeh; Lingjærde, Ole Christian; Kåresen, Rolf; Sauer, Torill; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2015, Breast Cancer Research. https://doi.org/10.1186/s13058-015-0548-5 (Academic article)
Using adrenaline during neonatal resuscitation may have an impact on serum cardiac troponin-T levels. Helmer, Caroline; Skranes, Janne Helen; Liestøl, Knut & Fugelseth, Drude. 2015, Acta Paediatrica. https://doi.org/10.1111/apa.13055 (Academic article)
Using adrenaline during neonatal resuscitation may have an impact on serum cardiac troponin-T levels. Helmer, Caroline; Skranes, Janne Helen; Liestøl, Knut & Fugelseth, Drude. 2015, Acta Paediatrica. https://doi.org/10.1111/apa.13055 (Academic article)
Whole-genome copy number analyses of NSCLC tumors reveal aberrations associated with EGFR mutations and may have prognostic impact. Bjaanæs, Maria Moksnes; Nilsen, Gro; Solberg, Steinar; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2015, Journal of Thoracic Oncology. (Academic article)
Whole-genome copy number analyses of NSCLC tumors reveal aberrations associated with EGFR mutations and may have prognostic impact. Bjaanæs, Maria Moksnes; Nilsen, Gro; Solberg, Steinar; Brustugun, Odd Terje; Lingjærde, Ole Christian & Helland, Åslaug. 2015, Journal of Thoracic Oncology. (Academic article)
2014
A gene panel, including LRP12, is frequently hypermethylated in major types of B-cell lymphoma. Bethge, Nicole; Honne, Hilde; Andresen, Kim; Hilden, Vera Irene; Trøen, Gunhild; Liestøl, Knut; Holte, Harald; Delabie, Jan; Lind, Guro Elisabeth & Smeland, Erlend B. 2014, PLOS ONE. https://doi.org/10.1371/journal.pone.0104249 (Academic article)A gene panel, including LRP12, is frequently hypermethylated in major types of B-cell lymphoma. Bethge, Nicole; Honne, Hilde; Andresen, Kim; Hilden, Vera Irene; Trøen, Gunhild; Liestøl, Knut; Holte, Harald; Delabie, Jan; Lind, Guro Elisabeth & Smeland, Erlend B. 2014, PLOS ONE. https://doi.org/10.1371/journal.pone.0104249 (Academic article)
A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions. Paulsen, Jonas; Rødland, Einar Andreas; Holden, Lars; Holden, Marit & Hovig, Johannes Eivind. 2014, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gku738 (Academic article)
A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions. Paulsen, Jonas; Rødland, Einar Andreas; Holden, Lars; Holden, Marit & Hovig, Johannes Eivind. 2014, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gku738 (Academic article)
ANCHR mediates Aurora-B-dependent abscission checkpoint control through retention of VPS4. Thoresen, Sigrid Bratlie; Campsteijn, Coen; Vietri, Marina; Schink, Kay Oliver; Liestøl, Knut; Andersen, Jens S.; Raiborg, Camilla & Stenmark, Harald. 2014, Nature Cell Biology. https://doi.org/10.1038/ncb2959 (Academic article)
ANCHR mediates Aurora-B-dependent abscission checkpoint control through retention of VPS4. Thoresen, Sigrid Bratlie; Campsteijn, Coen; Vietri, Marina; Schink, Kay Oliver; Liestøl, Knut; Andersen, Jens S.; Raiborg, Camilla & Stenmark, Harald. 2014, Nature Cell Biology. https://doi.org/10.1038/ncb2959 (Academic article)
Breast cancer stromal elastosis is associated with mammography screening detection, low Ki67 expression and favourable prognosis in a population-based study. Chen, Ying; Klingen, Tor Audun; Wik, Elisabeth; Aas, Hans; Vigeland, Einar; Liestøl, Knut; Garred, Øystein; Mæhlen, Jan; Akslen, Lars A. & Lømo, Jon. 2014, Diagnostic Pathology. https://doi.org/10.1186/s13000-014-0230-8 (Academic article)
Breast cancer stromal elastosis is associated with mammography screening detection, low Ki67 expression and favourable prognosis in a population-based study. Chen, Ying; Klingen, Tor Audun; Wik, Elisabeth; Aas, Hans; Vigeland, Einar; Liestøl, Knut; Garred, Øystein; Mæhlen, Jan; Akslen, Lars A. & Lømo, Jon. 2014, Diagnostic Pathology. https://doi.org/10.1186/s13000-014-0230-8 (Academic article)
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A & Drabløs, Finn. 2014, BMC Genomics. https://doi.org/10.1186/1471-2164-15-120 (Academic article)
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A & Drabløs, Finn. 2014, BMC Genomics. https://doi.org/10.1186/1471-2164-15-120 (Academic article)
Colorectal cancer DNA methylation marker panel validated with high performance in Non-Hodgkin lymphoma. Bethge, Nicole; Lothe, Ragnhild A; Honne, Hilde; Andresen, Kim; Trøen, Gunhild; Eknæs, Mette; Liestøl, Knut; Holte, Harald; Delabie, Jan; Smeland, Erlend B et al.. 2014, Epigenetics. https://doi.org/10.4161/epi.27554 (Academic article)
Colorectal cancer DNA methylation marker panel validated with high performance in Non-Hodgkin lymphoma. Bethge, Nicole; Lothe, Ragnhild A; Honne, Hilde; Andresen, Kim; Trøen, Gunhild; Eknæs, Mette; Liestøl, Knut; Holte, Harald; Delabie, Jan; Smeland, Erlend B et al.. 2014, Epigenetics. https://doi.org/10.4161/epi.27554 (Academic article)
Differential protein network analysis of the immune cell lineage. Clancy, Trevor & Hovig, Johannes Eivind. 2014, BioMed Research International. https://doi.org/10.1155/2014/363408 (Academic article)
Differential protein network analysis of the immune cell lineage. Clancy, Trevor & Hovig, Johannes Eivind. 2014, BioMed Research International. https://doi.org/10.1155/2014/363408 (Academic article)
DNase hypersensitive sites and association with multiple sclerosisxs. Disanto, Giulio; Sandve, Geir Kjetil; Ricigliano, Vito AG; Pakpoor, Julia; Berlanga-Taylor, Antonio; Handel, Adam E; Kuhle, Jens; Holden, Lars; Watson, Corey T; Giovannoni, Gavin et al.. 2014, Human Molecular Genetics. https://doi.org/10.1093/hmg/ddt489 (Academic article)
DNase hypersensitive sites and association with multiple sclerosisxs. Disanto, Giulio; Sandve, Geir Kjetil; Ricigliano, Vito AG; Pakpoor, Julia; Berlanga-Taylor, Antonio; Handel, Adam E; Kuhle, Jens; Holden, Lars; Watson, Corey T; Giovannoni, Gavin et al.. 2014, Human Molecular Genetics. https://doi.org/10.1093/hmg/ddt489 (Academic article)
From proteomes to complexomes in the era of systems biology. Clancy, Trevor & Hovig, Johannes Eivind. 2014, Proteomics. https://doi.org/10.1002/pmic.201300230 (Academic literature review)
From proteomes to complexomes in the era of systems biology. Clancy, Trevor & Hovig, Johannes Eivind. 2014, Proteomics. https://doi.org/10.1002/pmic.201300230 (Academic literature review)
Genomic copy number changes and the prognostic impact of the encoded genes PTEN and BIRC5 in malignant peripheral nerve sheath tumours. Høland, Maren; Kolberg, Mathias; Davidson, Ben; Sundby Hall, Kirsten; Mertens, Fredrik; van den Berg, E; Smeland, Sigbjørn; Picci, Piero; Lingjærde, Ole Christian & Lothe, Ragnhild A. 2014, European Journal of Cancer. (Abstract)
Genomic copy number changes and the prognostic impact of the encoded genes PTEN and BIRC5 in malignant peripheral nerve sheath tumours. Høland, Maren; Kolberg, Mathias; Davidson, Ben; Sundby Hall, Kirsten; Mertens, Fredrik; van den Berg, E; Smeland, Sigbjørn; Picci, Piero; Lingjærde, Ole Christian & Lothe, Ragnhild A. 2014, European Journal of Cancer. (Abstract)
HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization. Paulsen, Jonas; Sandve, Geir Kjetil F.; Gundersen, Sveinung; Lien, Tonje Gulbrandsen; Trengereid, Kai & Hovig, Johannes Eivind. 2014, Bioinformatics. https://doi.org/10.1093/bioinformatics/btu082 (Academic article)
HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization. Paulsen, Jonas; Sandve, Geir Kjetil F.; Gundersen, Sveinung; Lien, Tonje Gulbrandsen; Trengereid, Kai & Hovig, Johannes Eivind. 2014, Bioinformatics. https://doi.org/10.1093/bioinformatics/btu082 (Academic article)
High dose chemotherapy with autologous stem cell transplant for patients with transformed B-cell non-Hodgkin lymphoma in the rituximab era. Blaker, Yngvild Nuvin; Eide, Marianne Brodtkorb; Liestøl, Knut; Lauritzsen, Grete Fossum; Kolstad, Arne; Fosså, Alexander; Smeland, Erlend B & Holte, Harald. 2014, Leukemia and Lymphoma. https://doi.org/10.3109/10428194.2013.871632 (Academic article)
High dose chemotherapy with autologous stem cell transplant for patients with transformed B-cell non-Hodgkin lymphoma in the rituximab era. Blaker, Yngvild Nuvin; Eide, Marianne Brodtkorb; Liestøl, Knut; Lauritzsen, Grete Fossum; Kolstad, Arne; Fosså, Alexander; Smeland, Erlend B & Holte, Harald. 2014, Leukemia and Lymphoma. https://doi.org/10.3109/10428194.2013.871632 (Academic article)
High rate of per oral mecillinam treatment failure in community-acquired urinary tract infections caused by ESBL-producing escherichia coli. Søraas, Arne Vasli Lund; Sundsfjord, Arnfinn; Jørgensen, Silje Bakken; Liestøl, Knut & Jenum, Pål. 2014, PLOS ONE. https://doi.org/10.1371/journal.pone.0085889 (Academic article)
High rate of per oral mecillinam treatment failure in community-acquired urinary tract infections caused by ESBL-producing escherichia coli. Søraas, Arne Vasli Lund; Sundsfjord, Arnfinn; Jørgensen, Silje Bakken; Liestøl, Knut & Jenum, Pål. 2014, PLOS ONE. https://doi.org/10.1371/journal.pone.0085889 (Academic article)
Human somatic cell mutagenesis creates genetically tractable sarcomas. Molyneux, Sam; Waterhouse, PD; Shelton, Dawne; Shao, Yang W; Watling, Christopher M; Tang, Qing-Lian; Harris, Isaac S; Dickson, Brendan C; Tharmapalan, Pirashaanthy; Sandve, Geir Kjetil F. et al.. 2014, Nature Genetics. https://doi.org/10.1038/ng.3065 (Academic article)
Human somatic cell mutagenesis creates genetically tractable sarcomas. Molyneux, Sam; Waterhouse, PD; Shelton, Dawne; Shao, Yang W; Watling, Christopher M; Tang, Qing-Lian; Harris, Isaac S; Dickson, Brendan C; Tharmapalan, Pirashaanthy; Sandve, Geir Kjetil F. et al.. 2014, Nature Genetics. https://doi.org/10.1038/ng.3065 (Academic article)
Identifying pathogenic processes by integrating microarray data with prior knowledge. Nygård, Ståle; Reitan, Trond; Clancy, Trevor; Nygaard, Vegard; BJØRNSTAD, JOHANNES; Skrbic, Biljana; Tønnessen, Theis; Christensen, Geir Arve & Hovig, Johannes Eivind. 2014, BMC Bioinformatics. https://doi.org/10.1186/1471-2105-15-115 (Academic article)
Identifying pathogenic processes by integrating microarray data with prior knowledge. Nygård, Ståle; Reitan, Trond; Clancy, Trevor; Nygaard, Vegard; BJØRNSTAD, JOHANNES; Skrbic, Biljana; Tønnessen, Theis; Christensen, Geir Arve & Hovig, Johannes Eivind. 2014, BMC Bioinformatics. https://doi.org/10.1186/1471-2105-15-115 (Academic article)
Integrative analysis reveals extensive association between microRNA expression and mRNA−protein translation. Aure, Miriam Ragle; Jernstrøm, Sandra; Krohn, Marit; Due, Eldri Undlien; consortium, OSBREAC; Mills, Gordon B.; Børresen-Dale, Anne-Lise ; Sahlberg, Kristine Kleivi; Lingjærde, Ole Christian; Kristensen, Vessela Nedelcheva et al.. 2014, European Journal of Cancer. (Abstract)
Integrative analysis reveals extensive association between microRNA expression and mRNA−protein translation. Aure, Miriam Ragle; Jernstrøm, Sandra; Krohn, Marit; Due, Eldri Undlien; consortium, OSBREAC; Mills, Gordon B.; Børresen-Dale, Anne-Lise ; Sahlberg, Kristine Kleivi; Lingjærde, Ole Christian; Kristensen, Vessela Nedelcheva et al.. 2014, European Journal of Cancer. (Abstract)
Melanoma brain colonization involves the emergence of a brain-adaptive phenotype. Nygaard, Vigdis; Prasmickaite, Lina; Vasiliauskaite, Kotryna; Clancy, Trevor & Hovig, Johannes Eivind. 2014, Oncoscience. https://doi.org/10.18632/oncoscience.11 (Academic article)
Melanoma brain colonization involves the emergence of a brain-adaptive phenotype. Nygaard, Vigdis; Prasmickaite, Lina; Vasiliauskaite, Kotryna; Clancy, Trevor & Hovig, Johannes Eivind. 2014, Oncoscience. https://doi.org/10.18632/oncoscience.11 (Academic article)
Myocardial function in term and preterm infants. Influence of heart size, gestational age and postnatal maturation. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2014, Early Human Development. https://doi.org/10.1016/j.earlhumdev.2014.04.010 (Academic article)
Myocardial function in term and preterm infants. Influence of heart size, gestational age and postnatal maturation. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2014, Early Human Development. https://doi.org/10.1016/j.earlhumdev.2014.04.010 (Academic article)
Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels. Aanes, Håvard; Winata, Cecilia L.; Moen, Lars Fredrik; Østrup, Olga; Mathavan, Sinnakaruppan; Collas, Philippe; Rognes, Torbjørn & Alestrøm, Peter. 2014, PLOS ONE. https://doi.org/10.1371/journal.pone.0089158 (Academic article)
Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels. Aanes, Håvard; Winata, Cecilia L.; Moen, Lars Fredrik; Østrup, Olga; Mathavan, Sinnakaruppan; Collas, Philippe; Rognes, Torbjørn & Alestrøm, Peter. 2014, PLOS ONE. https://doi.org/10.1371/journal.pone.0089158 (Academic article)
Performance comparison of four exome capture systems for deep sequencing. Chilamakuri, Chandra Sekhar Reddy; Lorenz, Susanne; Madoui, Mohammed-Amin; Vodak, Daniel; Sun, Jinchang; Hovig, Johannes Eivind; Myklebost, Ola & Meza, Leonardo Zepeda. 2014, BMC Genomics. https://doi.org/10.1186/1471-2164-15-449 (Academic article)
Performance comparison of four exome capture systems for deep sequencing. Chilamakuri, Chandra Sekhar Reddy; Lorenz, Susanne; Madoui, Mohammed-Amin; Vodak, Daniel; Sun, Jinchang; Hovig, Johannes Eivind; Myklebost, Ola & Meza, Leonardo Zepeda. 2014, BMC Genomics. https://doi.org/10.1186/1471-2164-15-449 (Academic article)
Photoactivation Approaches Reveal a Role for Rab11 in FGFR4 Recycling and Signalling. Haugsten, Ellen Margrethe; Brech, Andreas; Liestøl, Knut; Norman, Jim C. & Wesche, Jørgen. 2014, Traffic: The moving front of cell biology. https://doi.org/10.1111/tra.12168 (Academic article)
Photoactivation Approaches Reveal a Role for Rab11 in FGFR4 Recycling and Signalling. Haugsten, Ellen Margrethe; Brech, Andreas; Liestøl, Knut; Norman, Jim C. & Wesche, Jørgen. 2014, Traffic: The moving front of cell biology. https://doi.org/10.1111/tra.12168 (Academic article)
Plasma microRNAs predicting clinical outcome in metastatic colorectal cancer patients receiving first-line oxaliplatin-based treatment. Kjersem, Janne Beathe; Ikdahl, Tone; Lingjærde, Ole Christian; Guren, Tormod Kyrre; Tveit, Magne Kjell & Kure, Elin H.. 2014, Molecular Oncology. https://doi.org/10.1016/j.molonc.2013.09.001 (Academic article)
Plasma microRNAs predicting clinical outcome in metastatic colorectal cancer patients receiving first-line oxaliplatin-based treatment. Kjersem, Janne Beathe; Ikdahl, Tone; Lingjærde, Ole Christian; Guren, Tormod Kyrre; Tveit, Magne Kjell & Kure, Elin H.. 2014, Molecular Oncology. https://doi.org/10.1016/j.molonc.2013.09.001 (Academic article)
Postmortem heart weight: relation to body size and effects of cardiovascular disease and cancer. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael & Mæhlen, Jan. 2014, Cardiovascular pathology. https://doi.org/10.1016/j.carpath.2013.09.001 (Academic article)
Postmortem heart weight: relation to body size and effects of cardiovascular disease and cancer. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael & Mæhlen, Jan. 2014, Cardiovascular pathology. https://doi.org/10.1016/j.carpath.2013.09.001 (Academic article)
Principles and methods of integrative genomic analyses in cancer. Kristensen, Vessela N.; Lingjærde, Ole Christian; Russnes, Hege Elisabeth Giercksky; Vollan, Hans Kristian Moen; Frigessi, Arnoldo & Børresen-Dale, Anne-Lise . 2014, Nature Reviews Cancer. https://doi.org/10.1038/nrc3721 (Academic literature review)
Principles and methods of integrative genomic analyses in cancer. Kristensen, Vessela N.; Lingjærde, Ole Christian; Russnes, Hege Elisabeth Giercksky; Vollan, Hans Kristian Moen; Frigessi, Arnoldo & Børresen-Dale, Anne-Lise . 2014, Nature Reviews Cancer. https://doi.org/10.1038/nrc3721 (Academic literature review)
Prognostic impact of genomic instability in colorectal cancer. Hveem, Tarjei Sveinsgjerd; Merok, Marianne Aarstad; Pretorius, Maria; Novelli, Marco; Silihagen, Mette; Sjo, Ole Helmer; Clinch, N; Liestøl, Knut; Svindland, Aud; Lothe, Ragnhild A et al.. 2014, British Journal of Cancer. https://doi.org/10.1038/bjc.2014.133 (Academic article)
Prognostic impact of genomic instability in colorectal cancer. Hveem, Tarjei Sveinsgjerd; Merok, Marianne Aarstad; Pretorius, Maria; Novelli, Marco; Silihagen, Mette; Sjo, Ole Helmer; Clinch, N; Liestøl, Knut; Svindland, Aud; Lothe, Ragnhild A et al.. 2014, British Journal of Cancer. https://doi.org/10.1038/bjc.2014.133 (Academic article)
Swarm: robust and fast clustering method for amplicon-based studies. Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah. 2014, PeerJ. https://doi.org/10.7717/peerj.593 (Academic article)
Swarm: robust and fast clustering method for amplicon-based studies. Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban & Dunthorn, Micah. 2014, PeerJ. https://doi.org/10.7717/peerj.593 (Academic article)
Systematic assessment of prognostic gene signatures for breast cancer shows distinct influence of time and ER status. Zhao, Xi; Rødland, Einar Andreas; Sørlie, Therese; Vollan, Hans Kristian Moen; Russnes, Hege Elisabeth Giercksky; Kristensen, Vessela N.; Lingjærde, Ole Christian & Børresen-Dale, Anne-Lise . 2014, BMC Cancer. https://doi.org/10.1186/1471-2407-14-211 (Academic article)
Systematic assessment of prognostic gene signatures for breast cancer shows distinct influence of time and ER status. Zhao, Xi; Rødland, Einar Andreas; Sørlie, Therese; Vollan, Hans Kristian Moen; Russnes, Hege Elisabeth Giercksky; Kristensen, Vessela N.; Lingjærde, Ole Christian & Børresen-Dale, Anne-Lise . 2014, BMC Cancer. https://doi.org/10.1186/1471-2407-14-211 (Academic article)
The multitude of molecular analyses in cancer: the opening of Pandora’s box. Russnes, Hege Elisabeth Giercksky; Lønning, Per Eystein; Børresen-Dale, Anne-Lise & Lingjærde, Ole Christian. 2014, Genome Biology. https://doi.org/10.1186/s13059-014-0447-6 (Academic article)
The multitude of molecular analyses in cancer: the opening of Pandora’s box. Russnes, Hege Elisabeth Giercksky; Lønning, Per Eystein; Børresen-Dale, Anne-Lise & Lingjærde, Ole Christian. 2014, Genome Biology. https://doi.org/10.1186/s13059-014-0447-6 (Academic article)
Tissue Doppler imaging in very preterm infants during the first 24 h of life: an observational study. Lee, Anja; Nestaas, Eirik; Liestøl, Knut; Brunvand, Leif; Lindemann, Rolf & Fugelseth, Drude . 2014, Archives of Disease in Childhood: Fetal and Neonatal Edition. https://doi.org/10.1136/archdischild-2013-304197 (Academic article)
Tissue Doppler imaging in very preterm infants during the first 24 h of life: an observational study. Lee, Anja; Nestaas, Eirik; Liestøl, Knut; Brunvand, Leif; Lindemann, Rolf & Fugelseth, Drude . 2014, Archives of Disease in Childhood: Fetal and Neonatal Edition. https://doi.org/10.1136/archdischild-2013-304197 (Academic article)
Whole-genome integrative analysis reveals expression signatures predicting transformation in follicular lymphoma. Brodtkorb, Marianne; Lingjærde, Ole Christian; Huse, Kanutte; Trøen, Gunhild; Hystad, Marit Elise; Hilden, Vera Irene; Myklebust, June; Leich, Ellen; Rosenwald, Andreas; Delabie, Jan et al.. 2014, Blood. https://doi.org/10.1182/blood-2013-07-512392 (Academic article)
Whole-genome integrative analysis reveals expression signatures predicting transformation in follicular lymphoma. Brodtkorb, Marianne; Lingjærde, Ole Christian; Huse, Kanutte; Trøen, Gunhild; Hystad, Marit Elise; Hilden, Vera Irene; Myklebust, June; Leich, Ellen; Rosenwald, Andreas; Delabie, Jan et al.. 2014, Blood. https://doi.org/10.1182/blood-2013-07-512392 (Academic article)
2013
A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures. Backe, Paul Hoff; Simm, Roger; Lærdahl, Jon Kristen; Dalhus, Bjørn; Fagerlund, Annette; Økstad, Ole Andreas Løchen; Rognes, Torbjørn; Alseth, Ingrun; Kolstø, Anne-Brit & Bjørås, Magnar. 2013, Journal of Structural Biology. https://doi.org/10.1016/j.jsb.2013.04.007 (Academic article)A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures. Backe, Paul Hoff; Simm, Roger; Lærdahl, Jon Kristen; Dalhus, Bjørn; Fagerlund, Annette; Økstad, Ole Andreas Løchen; Rognes, Torbjørn; Alseth, Ingrun; Kolstø, Anne-Brit & Bjørås, Magnar. 2013, Journal of Structural Biology. https://doi.org/10.1016/j.jsb.2013.04.007 (Academic article)
Bioinformatics in genomics. Hovig, Johannes Eivind; Nakken, S; Clancy, T; Paulsen, J; Gundersen, S; Lien, T; Glad, I; Nygard, S; Frigessi, A & Sandve, GK. 2013, European Journal of Cancer. (Abstract)
Bioinformatics in genomics. Hovig, Johannes Eivind; Nakken, S; Clancy, T; Paulsen, J; Gundersen, S; Lien, T; Glad, I; Nygard, S; Frigessi, A & Sandve, GK. 2013, European Journal of Cancer. (Abstract)
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer. Schee, Kristina; Lorenz, Susanne; Worren, Merete Molton; Günther, Clara-Cecilie; Holden, Marit; Hovig, Johannes Eivind; Fodstad, Øystein; Meza, Leonardo Zepeda & Flatmark, Kjersti. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0066165 (Academic article)
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer. Schee, Kristina; Lorenz, Susanne; Worren, Merete Molton; Günther, Clara-Cecilie; Holden, Marit; Hovig, Johannes Eivind; Fodstad, Øystein; Meza, Leonardo Zepeda & Flatmark, Kjersti. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0066165 (Academic article)
Enhancing nucleic acid delivery by photochemical internalization. Bøe, Sigurd & Hovig, Eivind. 2013, Therapeutic delivery. https://doi.org/10.4155/tde.13.78 (Academic literature review)
Enhancing nucleic acid delivery by photochemical internalization. Bøe, Sigurd & Hovig, Eivind. 2013, Therapeutic delivery. https://doi.org/10.4155/tde.13.78 (Academic literature review)
Evaluation of Biodegradable Peptide Carriers for Light-Directed Targeting. Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Hovig, Johannes Eivind & Bøe, Sigurd. 2013, Nucleic Acid Therapeutics. https://doi.org/10.1089/nat.2012.0403 (Academic article)
Evaluation of Biodegradable Peptide Carriers for Light-Directed Targeting. Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Hovig, Johannes Eivind & Bøe, Sigurd. 2013, Nucleic Acid Therapeutics. https://doi.org/10.1089/nat.2012.0403 (Academic article)
Evolutionary Paths of the cAMP-Dependent Protein Kinase (PKA) Catalytic Subunits. Søberg, Kristoffer; Jahnsen, Tore; Rognes, Torbjørn; Skålhegg, Bjørn Steen & Lærdahl, Jon Kristen. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0060935 (Academic article)
Evolutionary Paths of the cAMP-Dependent Protein Kinase (PKA) Catalytic Subunits. Søberg, Kristoffer; Jahnsen, Tore; Rognes, Torbjørn; Skålhegg, Bjørn Steen & Lærdahl, Jon Kristen. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0060935 (Academic article)
Flotillins as regulators of ErbB2 levels in breast cancer. Pust, Sascha; Klokk, Tove Irene; Musa, Nagham; Jenstad, Monica; Risberg, Bjørn Åke; Erikstein, Bjørn K; Tcatchoff, Lionel; Liestøl, Knut; Danielsen, Håvard Emil; van Deurs, Bo et al.. 2013, Oncogene. https://doi.org/10.1038/onc.2012.357 (Academic article)
Flotillins as regulators of ErbB2 levels in breast cancer. Pust, Sascha; Klokk, Tove Irene; Musa, Nagham; Jenstad, Monica; Risberg, Bjørn Åke; Erikstein, Bjørn K; Tcatchoff, Lionel; Liestøl, Knut; Danielsen, Håvard Emil; van Deurs, Bo et al.. 2013, Oncogene. https://doi.org/10.1038/onc.2012.357 (Academic article)
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements. Paulsen, Jonas; Lien, Tonje Gulbrandsen; Sandve, Geir Kjetil; Holden, Lars; Borgan, Ørnulf; Glad, Ingrid Kristine & Hovig, Johannes Eivind. 2013, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkt227 (Academic article)
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements. Paulsen, Jonas; Lien, Tonje Gulbrandsen; Sandve, Geir Kjetil; Holden, Lars; Borgan, Ørnulf; Glad, Ingrid Kristine & Hovig, Johannes Eivind. 2013, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkt227 (Academic article)
High Levels of Genomic Aberrations in Serous Ovarian Cancers Are Associated with Better Survival. Baumbusch, Lars Oliver; Helland, Åslaug; Wang, Yun; Liestøl, Knut; Schaner, M.E.; Holm, Ruth; Etemadmoghadam, D; Alsop, Kathryn; Brown, Pat; Mitchell, Gillian et al.. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0054356 (Academic article)
High Levels of Genomic Aberrations in Serous Ovarian Cancers Are Associated with Better Survival. Baumbusch, Lars Oliver; Helland, Åslaug; Wang, Yun; Liestøl, Knut; Schaner, M.E.; Holm, Ruth; Etemadmoghadam, D; Alsop, Kathryn; Brown, Pat; Mitchell, Gillian et al.. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0054356 (Academic article)
Identification of Highly Methylated Genes across Various Types of B-Cell Non-Hodgkin Lymphoma. Bethge, Nicole; Honne, Hilde; Hilden, Vera Irene; Trøen, Gunhild; Eknæs, Mette; Liestøl, Knut; Holte, Harald; Delabie, Jan; Smeland, Erlend B & Lind, Guro Elisabeth. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0079602 (Academic article)
Identification of Highly Methylated Genes across Various Types of B-Cell Non-Hodgkin Lymphoma. Bethge, Nicole; Honne, Hilde; Hilden, Vera Irene; Trøen, Gunhild; Eknæs, Mette; Liestøl, Knut; Holte, Harald; Delabie, Jan; Smeland, Erlend B & Lind, Guro Elisabeth. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0079602 (Academic article)
Identifying clusters in genomics data by recursive partitioning. Nilsen, Gro; Borgan, Ørnulf; Liestøl, Knut & Lingjærde, Ole Christian. 2013, Statistical Applications in Genetics and Molecular Biology. https://doi.org/10.1515/sagmb-2013-0016 (Academic article)
Identifying clusters in genomics data by recursive partitioning. Nilsen, Gro; Borgan, Ørnulf; Liestøl, Knut & Lingjærde, Ole Christian. 2013, Statistical Applications in Genetics and Molecular Biology. https://doi.org/10.1515/sagmb-2013-0016 (Academic article)
Identifying In-Trans Process Associated Genes in Breast Cancer by Integrated Analysis of Copy Number and Expression Data. Aure, Miriam Ragle; Steinfeld, I; Baumbusch, Lars Oliver; Liestøl, Knut; Lipson, Doron; Nyberg, Sandra Johanna; Naume, Bjørn; Sahlberg, Kristine Kleivi; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0053014 (Academic article)
Identifying In-Trans Process Associated Genes in Breast Cancer by Integrated Analysis of Copy Number and Expression Data. Aure, Miriam Ragle; Steinfeld, I; Baumbusch, Lars Oliver; Liestøl, Knut; Lipson, Doron; Nyberg, Sandra Johanna; Naume, Bjørn; Sahlberg, Kristine Kleivi; Kristensen, Vessela N.; Børresen-Dale, Anne-Lise et al.. 2013, PLOS ONE. https://doi.org/10.1371/journal.pone.0053014 (Academic article)
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors. Aure, Miriam Ragle; Leivonen, Suvi-Katri; Fleischer, Thomas; Zhu, Qian; Overgaard, Jens; Alsner, Jan; Tramm, Trine; Louhimo, Riku; Grenaker, Grethe Irene; Åerälä, Merja et al.. 2013, Genome Biology. https://doi.org/10.1186/gb-2013-14-11-r126 (Academic article)
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors. Aure, Miriam Ragle; Leivonen, Suvi-Katri; Fleischer, Thomas; Zhu, Qian; Overgaard, Jens; Alsner, Jan; Tramm, Trine; Louhimo, Riku; Grenaker, Grethe Irene; Åerälä, Merja et al.. 2013, Genome Biology. https://doi.org/10.1186/gb-2013-14-11-r126 (Academic article)
Influence of DNA copy number and mRNA levels on the expression of breast cancer related proteins. Myhre, Simen; Lingjærde, Ole Christian; Hennessy, Bryan T; Aure, Miriam Ragle; Carey, Mark S; Alsner, Jan; Tramm, Trine; Ouergaard, Jens; Mills, Gordon B.; Børresen-Dale, Anne-Lise et al.. 2013, Molecular Oncology. https://doi.org/10.1016/j.molonc.2013.02.018 (Academic article)
Influence of DNA copy number and mRNA levels on the expression of breast cancer related proteins. Myhre, Simen; Lingjærde, Ole Christian; Hennessy, Bryan T; Aure, Miriam Ragle; Carey, Mark S; Alsner, Jan; Tramm, Trine; Ouergaard, Jens; Mills, Gordon B.; Børresen-Dale, Anne-Lise et al.. 2013, Molecular Oncology. https://doi.org/10.1016/j.molonc.2013.02.018 (Academic article)
Influence of polymorphisms in genes encoding immunoregulatory proteins and metabolizing enzymes on susceptibility and outcome in patients with diffuse large B-cell lymphoma treated with rituximab. Yri, Olav Erich; Ekstrøm, Per Olaf; Hilden, Vera Irene; Gaudernack, Gustav; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2013, Leukemia and Lymphoma. https://doi.org/10.3109/10428194.2013.774392 (Academic article)
Influence of polymorphisms in genes encoding immunoregulatory proteins and metabolizing enzymes on susceptibility and outcome in patients with diffuse large B-cell lymphoma treated with rituximab. Yri, Olav Erich; Ekstrøm, Per Olaf; Hilden, Vera Irene; Gaudernack, Gustav; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2013, Leukemia and Lymphoma. https://doi.org/10.3109/10428194.2013.774392 (Academic article)
Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression. Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Handunnetthi, Lahiru; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2013, BMC Medical Genomics. https://doi.org/10.1186/1755-8794-6-45 (Academic article)
Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression. Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Handunnetthi, Lahiru; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2013, BMC Medical Genomics. https://doi.org/10.1186/1755-8794-6-45 (Academic article)
Light-Controlled Modulation of Gene Expression Using Polyamidoamine Formulations. Bøe, Sigurd; Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Lavelle, Timothy J; Sæbøe-Larssen, Stein & Hovig, Johannes Eivind. 2013, Nucleic Acid Therapeutics. https://doi.org/10.1089/nat.2012.0413 (Academic article)
Light-Controlled Modulation of Gene Expression Using Polyamidoamine Formulations. Bøe, Sigurd; Jørgensen, Jens Andreas Lindin; Longva, Ane Sager; Lavelle, Timothy J; Sæbøe-Larssen, Stein & Hovig, Johannes Eivind. 2013, Nucleic Acid Therapeutics. https://doi.org/10.1089/nat.2012.0413 (Academic article)
Light-induced mRNA transfection. Bøe, Sigurd & Hovig, Eivind. 2013, Methods in molecular biology. https://doi.org/10.1007/978-1-62703-260-5_6 (Academic article)
Light-induced mRNA transfection. Bøe, Sigurd & Hovig, Eivind. 2013, Methods in molecular biology. https://doi.org/10.1007/978-1-62703-260-5_6 (Academic article)
Longitudinal assessment of atrioventricular annulus excursion by grey-scale m-mode and colour tissue Doppler imaging in premature infants. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2013, Early Human Development. https://doi.org/10.1016/j.earlhumdev.2013.09.006 (Academic article)
Longitudinal assessment of atrioventricular annulus excursion by grey-scale m-mode and colour tissue Doppler imaging in premature infants. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2013, Early Human Development. https://doi.org/10.1016/j.earlhumdev.2013.09.006 (Academic article)
Low Heart Rates Predict Incident Atrial Fibrillation in Healthy Middle-Aged Men. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Engeseth, Kristian; Gjesdal, Knut; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2013, Circulation: Arrhythmia and Electrophysiology. https://doi.org/10.1161/CIRCEP.113.000267 (Academic article)
Low Heart Rates Predict Incident Atrial Fibrillation in Healthy Middle-Aged Men. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Engeseth, Kristian; Gjesdal, Knut; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2013, Circulation: Arrhythmia and Electrophysiology. https://doi.org/10.1161/CIRCEP.113.000267 (Academic article)
Membrane remodeling by the PX-BAR protein SNX18 promotes autophagosome formation. Knævelsrud, Helene; Søreng, Kristiane; Raiborg, Camilla; Håberg, Karin; Rasmuson, Fredrik; Brech, Andreas; Liestøl, Knut; Rusten, Tor Erik; Stenmark, Harald Alfred; Neufeld, TP et al.. 2013, Journal of Cell Biology. https://doi.org/10.1083/jcb.201205129 (Academic article)
Membrane remodeling by the PX-BAR protein SNX18 promotes autophagosome formation. Knævelsrud, Helene; Søreng, Kristiane; Raiborg, Camilla; Håberg, Karin; Rasmuson, Fredrik; Brech, Andreas; Liestøl, Knut; Rusten, Tor Erik; Stenmark, Harald Alfred; Neufeld, TP et al.. 2013, Journal of Cell Biology. https://doi.org/10.1083/jcb.201205129 (Academic article)
Muscle activity and head kinematics in unconstrained movements in subjects with chronic neck pain; cervical motor dysfunction or low exertion motor output?. Vikne, Harald; Bakke, Eva; Liestøl, Knut; Engen, Stian Rugsveen & Vøllestad, Nina Køpke. 2013, BMC Musculoskeletal Disorders. https://doi.org/10.1186/1471-2474-14-314 (Academic article)
Muscle activity and head kinematics in unconstrained movements in subjects with chronic neck pain; cervical motor dysfunction or low exertion motor output?. Vikne, Harald; Bakke, Eva; Liestøl, Knut; Engen, Stian Rugsveen & Vøllestad, Nina Køpke. 2013, BMC Musculoskeletal Disorders. https://doi.org/10.1186/1471-2474-14-314 (Academic article)
Myocardial function in premature infants: a longitudinal observational study. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2013, BMJ Open. https://doi.org/10.1136/bmjopen-2012-002441 (Academic article)
Myocardial function in premature infants: a longitudinal observational study. Eriksen, Beate Horsberg; Nestaas, Eirik; Hole, Torstein; Liestøl, Knut; Støylen, Asbjørn & Fugelseth, Drude . 2013, BMJ Open. https://doi.org/10.1136/bmjopen-2012-002441 (Academic article)
Pathway analysis of genetic markers associated with a functional MRI faces paradigm implicates polymorphisms in calcium responsive pathways. Mattingsdal, Morten; Brown, Andrew; Djurovic, Srdjan; Sønderby, Ida Elken; ALONSO, ANDRES SERVER; Melle, Ingrid; Agartz, Ingrid; Hovig, Johannes Eivind; Jensen, Jimmy Kristian & Andreassen, Ole Andreas. 2013, NeuroImage. https://doi.org/10.1016/j.neuroimage.2012.12.035 (Academic article)
Pathway analysis of genetic markers associated with a functional MRI faces paradigm implicates polymorphisms in calcium responsive pathways. Mattingsdal, Morten; Brown, Andrew; Djurovic, Srdjan; Sønderby, Ida Elken; ALONSO, ANDRES SERVER; Melle, Ingrid; Agartz, Ingrid; Hovig, Johannes Eivind; Jensen, Jimmy Kristian & Andreassen, Ole Andreas. 2013, NeuroImage. https://doi.org/10.1016/j.neuroimage.2012.12.035 (Academic article)
Predicting Physical Interactions between Protein Complexes. Clancy, Trevor; Rødland, Einar Andreas; Nygård, Ståle & Hovig, Johannes Eivind. 2013, Molecular & Cellular Proteomics. https://doi.org/10.1074/mcp.O112.019828 (Academic article)
Predicting Physical Interactions between Protein Complexes. Clancy, Trevor; Rødland, Einar Andreas; Nygård, Ståle & Hovig, Johannes Eivind. 2013, Molecular & Cellular Proteomics. https://doi.org/10.1074/mcp.O112.019828 (Academic article)
Predictors of atrial fibrillation differ in men with high vs low physical fitness. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Engeseth, Kristian; Gjesdal, Knut; Kjeldsen, Sverre Erik; Arnesen, Harald; Erkssen, J. & Bodegard, Johan. 2013, European Heart Journal. (Abstract)
Predictors of atrial fibrillation differ in men with high vs low physical fitness. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Engeseth, Kristian; Gjesdal, Knut; Kjeldsen, Sverre Erik; Arnesen, Harald; Erkssen, J. & Bodegard, Johan. 2013, European Heart Journal. (Abstract)
Production of phosphatidylinositol 5-phosphate via PIKfyve and MTMR3 regulates cell migration. Oppelt, Angela; Lobert, Viola Helene; Haglund, Kaisa; Mackey, Ashley M.; Rameh, Lucia E.; Liestøl, Knut; Schink, Kay Oliver; Pedersen, Nina Marie; Wenzel, Eva; Haugsten, Ellen Margrethe et al.. 2013, EMBO Reports. https://doi.org/10.1038/embor.2012.183 (Academic article)
Production of phosphatidylinositol 5-phosphate via PIKfyve and MTMR3 regulates cell migration. Oppelt, Angela; Lobert, Viola Helene; Haglund, Kaisa; Mackey, Ashley M.; Rameh, Lucia E.; Liestøl, Knut; Schink, Kay Oliver; Pedersen, Nina Marie; Wenzel, Eva; Haugsten, Ellen Margrethe et al.. 2013, EMBO Reports. https://doi.org/10.1038/embor.2012.183 (Academic article)
Rapidly upsloping ST-segment on exercise ECG: a marker of reduced coronary heart disease mortality risk. Hodnesdal, Christian; Prestgaard, Erik Edvard; Erikssen, Gunnar; Gjesdal, Knut; Kjeldsen, Sverre Erik; Liestøl, Knut; Skretteberg, Torger; Erikssen, Jan Emil & Bodegard, Johan. 2013, European Journal of Preventive Cardiology (EJPC). https://doi.org/10.1177/2047487312444370 (Academic article)
Rapidly upsloping ST-segment on exercise ECG: a marker of reduced coronary heart disease mortality risk. Hodnesdal, Christian; Prestgaard, Erik Edvard; Erikssen, Gunnar; Gjesdal, Knut; Kjeldsen, Sverre Erik; Liestøl, Knut; Skretteberg, Torger; Erikssen, Jan Emil & Bodegard, Johan. 2013, European Journal of Preventive Cardiology (EJPC). https://doi.org/10.1177/2047487312444370 (Academic article)
Seven-Year Increase in Exercise Systolic Blood Pressure at Moderate Workload Predicts Long-Term Risk of Coronary Heart Disease and Mortality in Healthy Middle-Aged Men. Skretteberg, Per Torger; Grundvold, Irene; Kjeldsen, Sverre Erik; Engeseth, Kristian; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Gjesdal, Knut & Bodegard, Johan. 2013, Hypertension. https://doi.org/10.1161/HYPERTENSIONAHA.111.00793 (Academic article)
Seven-Year Increase in Exercise Systolic Blood Pressure at Moderate Workload Predicts Long-Term Risk of Coronary Heart Disease and Mortality in Healthy Middle-Aged Men. Skretteberg, Per Torger; Grundvold, Irene; Kjeldsen, Sverre Erik; Engeseth, Kristian; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Gjesdal, Knut & Bodegard, Johan. 2013, Hypertension. https://doi.org/10.1161/HYPERTENSIONAHA.111.00793 (Academic article)
Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities. Weel-Sneve, Ragnhild; Kristiansen, Knut Ivan; Odsbu, Ingvild; Dalhus, Bjørn; Booth, James; Rognes, Torbjørn; Skarstad, Kirsten & Bjørås, Magnar. 2013, PLoS Genetics. https://doi.org/10.1371/journal.pgen.1003260 (Academic article)
Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities. Weel-Sneve, Ragnhild; Kristiansen, Knut Ivan; Odsbu, Ingvild; Dalhus, Bjørn; Booth, James; Rognes, Torbjørn; Skarstad, Kirsten & Bjørås, Magnar. 2013, PLoS Genetics. https://doi.org/10.1371/journal.pgen.1003260 (Academic article)
Substantial loss of conserved and gain of novel microRNA families in flatworms. Fromm, Bastian; Worren, Merete Molton; Hahn, Christoph; Hovig, Johannes Eivind & Bachmann, Lutz. 2013, Molecular Biology and Evolution (MBE). https://doi.org/10.1093/molbev/mst155 (Academic article)
Substantial loss of conserved and gain of novel microRNA families in flatworms. Fromm, Bastian; Worren, Merete Molton; Hahn, Christoph; Hovig, Johannes Eivind & Bachmann, Lutz. 2013, Molecular Biology and Evolution (MBE). https://doi.org/10.1093/molbev/mst155 (Academic article)
Subtype-specific response to bevacizumab is reflected in the metabolome and transcriptome of breast cancer xenografts. Borgan, Eldrid; Lindholm, Evita Maria; Moestue, Siver Andreas; Mælandsmo, Gunhild; Lingjærde, Ole Christian; Gribbestad, Ingrid S; Børresen-Dale, Anne-Lise ; Engebråten, Olav & Sørlie, Therese. 2013, Molecular Oncology. https://doi.org/10.1016/j.molonc.2012.10.005 (Academic article)
Subtype-specific response to bevacizumab is reflected in the metabolome and transcriptome of breast cancer xenografts. Borgan, Eldrid; Lindholm, Evita Maria; Moestue, Siver Andreas; Mælandsmo, Gunhild; Lingjærde, Ole Christian; Gribbestad, Ingrid S; Børresen-Dale, Anne-Lise ; Engebråten, Olav & Sørlie, Therese. 2013, Molecular Oncology. https://doi.org/10.1016/j.molonc.2012.10.005 (Academic article)
Survival meta-analyses for > 1800 malignant peripheral nerve sheath tumor patients with and without neurofibromatosis type 1. Kolberg, Matthias; Høland, Maren; Ågesen, Trude Holmeide; Brekke, Helge Roar; Liestøl, Knut; Hall, Kirsten Sundby; Mertens, Fredrik; Picci, Piero; Smeland, Sigbjørn & Lothe, Ragnhild A. 2013, Neuro-Oncology. https://doi.org/10.1093/neuonc/nos287 (Academic literature review)
Survival meta-analyses for > 1800 malignant peripheral nerve sheath tumor patients with and without neurofibromatosis type 1. Kolberg, Matthias; Høland, Maren; Ågesen, Trude Holmeide; Brekke, Helge Roar; Liestøl, Knut; Hall, Kirsten Sundby; Mertens, Fredrik; Picci, Piero; Smeland, Sigbjørn & Lothe, Ragnhild A. 2013, Neuro-Oncology. https://doi.org/10.1093/neuonc/nos287 (Academic literature review)
Ten Simple Rules for Reproducible Computational Research. Sandve, Geir Kjetil; Nekrutenko, Anton; Taylor, James & Hovig, Johannes Eivind. 2013, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1003285 (Editoral)
Ten Simple Rules for Reproducible Computational Research. Sandve, Geir Kjetil; Nekrutenko, Anton; Taylor, James & Hovig, Johannes Eivind. 2013, PLoS Computational Biology. https://doi.org/10.1371/journal.pcbi.1003285 (Editoral)
The Genomic HyperBrowser: an analysis web server for genome-scale data. Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard et al.. 2013, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkt342 (Academic article)
The Genomic HyperBrowser: an analysis web server for genome-scale data. Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard et al.. 2013, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gkt342 (Academic article)
The smoothness of unconstrained head movements is velocity-dependent. Vikne, Harald; Bakke, Eva; Liestøl, Knut; Sandbæk, Gunnar & Vøllestad, Nina Køpke. 2013, Human Movement Science. https://doi.org/10.1016/j.humov.2012.12.013 (Academic article)
The smoothness of unconstrained head movements is velocity-dependent. Vikne, Harald; Bakke, Eva; Liestøl, Knut; Sandbæk, Gunnar & Vøllestad, Nina Køpke. 2013, Human Movement Science. https://doi.org/10.1016/j.humov.2012.12.013 (Academic article)
Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response. Booth, James A.; Thomassen, Gard O Sundby; Rowe, Alexander D.; Weel-Sneve, Ragnhild; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar; Rognes, Torbjørn & Lindvall, Jessica Margareta. 2013, Scientific Reports. https://doi.org/10.1038/srep03053 (Academic article)
Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response. Booth, James A.; Thomassen, Gard O Sundby; Rowe, Alexander D.; Weel-Sneve, Ragnhild; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar; Rognes, Torbjørn & Lindvall, Jessica Margareta. 2013, Scientific Reports. https://doi.org/10.1038/srep03053 (Academic article)
Triglycerides-diabetes association in healthy middle-aged men: Modified by physical fitness? A long term follow-up of 1962 Norwegian men in the Oslo Ischemia Study. Skretteberg, Torger; Nordeide, Grytten Anette; Gjertsen, Kathrine; Grundvold, Irene; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Mellbin, Linda; Liestøl, Knut; Fraser, David A.; Erikssen, Gunnar et al.. 2013, Diabetes Research and Clinical Practice. https://doi.org/10.1016/j.diabres.2013.06.001 (Academic article)
Triglycerides-diabetes association in healthy middle-aged men: Modified by physical fitness? A long term follow-up of 1962 Norwegian men in the Oslo Ischemia Study. Skretteberg, Torger; Nordeide, Grytten Anette; Gjertsen, Kathrine; Grundvold, Irene; Kjeldsen, Sverre Erik; Erikssen, Jan Emil; Mellbin, Linda; Liestøl, Knut; Fraser, David A.; Erikssen, Gunnar et al.. 2013, Diabetes Research and Clinical Practice. https://doi.org/10.1016/j.diabres.2013.06.001 (Academic article)
Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Berlanga-Taylor, Antonio; Gallone, Anna; Hanwell, Heather EC; Drabløs, Finn; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V. 2013, BMC Medicine. https://doi.org/10.1186/1741-7015-11-163 (Academic article)
Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Berlanga-Taylor, Antonio; Gallone, Anna; Hanwell, Heather EC; Drabløs, Finn; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V. 2013, BMC Medicine. https://doi.org/10.1186/1741-7015-11-163 (Academic article)
2012
7-year reduction of exercise max heart rate predicts new onset diabetes. Engeseth, Kristian; Skretteberg, Per Torger; Grundvold, Irene; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Kjeldsen, Sverre Erik & Bodegard, Johan. 2012, European Heart Journal. (Abstract)7-year reduction of exercise max heart rate predicts new onset diabetes. Engeseth, Kristian; Skretteberg, Per Torger; Grundvold, Irene; Liestøl, Knut; Erikssen, Gunnar; Erikssen, Jan Emil; Kjeldsen, Sverre Erik & Bodegard, Johan. 2012, European Heart Journal. (Abstract)
A primer on the current state of microarray technologies. Trachtenberg, AJ; Robert, JH; Abdalla, AE; Fraser, A; He, SY; Lacy, JN; Rivas-Morello, C; Truong, A; Hardiman, G; Ohno-Machado, Lucila et al.. 2012, Methods in molecular biology. (Academic literature review)
A primer on the current state of microarray technologies. Trachtenberg, AJ; Robert, JH; Abdalla, AE; Fraser, A; He, SY; Lacy, JN; Rivas-Morello, C; Truong, A; Hardiman, G; Ohno-Machado, Lucila et al.. 2012, Methods in molecular biology. (Academic literature review)
Age-Associated Hyper-Methylated Regions in the Human Brain Overlap with Bivalent Chromatin Domains. Watson, Corey T; Disanto, Giulio; Sandve, Geir Kjetil; Breden, Felix; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0043840 (Academic article)
Age-Associated Hyper-Methylated Regions in the Human Brain Overlap with Bivalent Chromatin Domains. Watson, Corey T; Disanto, Giulio; Sandve, Geir Kjetil; Breden, Felix; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0043840 (Academic article)
Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nordstrand, Line Mari; Furu, Kari; Paulsen, Jonas; Rognes, Torbjørn & Klungland, Arne. 2012, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gks839 (Academic article)
Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nordstrand, Line Mari; Furu, Kari; Paulsen, Jonas; Rognes, Torbjørn & Klungland, Arne. 2012, Nucleic Acids Research (NAR). https://doi.org/10.1093/nar/gks839 (Academic article)
ALKBH1 Is a Histone H2A Dioxygenase Involved in Neural Differentiation. Ougland, Rune; Lando, David; Jonson, Ida; Dahl, John Arne; Moen, Marivi; Nordstrand, Line Mari; Rognes, Torbjørn; Lee, Jeannie T; Klungland, Arne; Kouzarides, Tony et al.. 2012, Stem Cells. https://doi.org/10.1002/stem.1228 (Academic article)
ALKBH1 Is a Histone H2A Dioxygenase Involved in Neural Differentiation. Ougland, Rune; Lando, David; Jonson, Ida; Dahl, John Arne; Moen, Marivi; Nordstrand, Line Mari; Rognes, Torbjørn; Lee, Jeannie T; Klungland, Arne; Kouzarides, Tony et al.. 2012, Stem Cells. https://doi.org/10.1002/stem.1228 (Academic article)
Analyzing cancer samples with SNP arrays. van Loo, Peter; Nilsen, Gro; Nordgard, Silje H.; Vollan, Hans Kristian Moen; Børresen-Dale, Anne-Lise ; Kristensen, Vessela N. & Lingjærde, Ole Christian. 2012, Humana Press. https://doi.org/10.1007/978-1-61779-400-1_4 (Academic chapter/article/Conference paper)
Analyzing cancer samples with SNP arrays. van Loo, Peter; Nilsen, Gro; Nordgard, Silje H.; Vollan, Hans Kristian Moen; Børresen-Dale, Anne-Lise ; Kristensen, Vessela N. & Lingjærde, Ole Christian. 2012, Humana Press. https://doi.org/10.1007/978-1-61779-400-1_4 (Academic chapter/article/Conference paper)
CellLineMiner: a knowledge portal for human cell lines. Nakken, Sigve; Johansen, Morten; Fillebeen, Julien; Berge, Ole Petter; Kirkerød, Harald; Jenssen, Tor-Kristian & Hovig, Eivind. 2012, Bioinformation. https://doi.org/10.6026/97320630081119 (Academic article)
CellLineMiner: a knowledge portal for human cell lines. Nakken, Sigve; Johansen, Morten; Fillebeen, Julien; Berge, Ole Petter; Kirkerød, Harald; Jenssen, Tor-Kristian & Hovig, Eivind. 2012, Bioinformation. https://doi.org/10.6026/97320630081119 (Academic article)
ColoGuidePro: A Prognostic 7-Gene Expression Signature for Stage III Colorectal Cancer Patients. Sveen, Anita; Ågesen, Trude Holmeide; Nesbakken, Arild; Meling, Gunn Iren; Rognum, Torleiv Ole; Liestøl, Knut; Skotheim, Rolf Inge & Lothe, Ragnhild A. 2012, Clinical Cancer Research. https://doi.org/10.1158/1078-0432.CCR-11-3302 (Academic article)
ColoGuidePro: A Prognostic 7-Gene Expression Signature for Stage III Colorectal Cancer Patients. Sveen, Anita; Ågesen, Trude Holmeide; Nesbakken, Arild; Meling, Gunn Iren; Rognum, Torleiv Ole; Liestøl, Knut; Skotheim, Rolf Inge & Lothe, Ragnhild A. 2012, Clinical Cancer Research. https://doi.org/10.1158/1078-0432.CCR-11-3302 (Academic article)
Copynumber: Efficient algorithms for single and multi-track copy number segmentation. Nilsen, Gro; Liestøl, Knut; Van Loo, P; Vollan, Hans Kristian Moen; Eide, Marianne Brodtkorb; Rueda, Oscar M.; Chin, Suet-Feung; Russel, Roslin; Baumbusch, Lars Oliver; Caldas, Carlos et al.. 2012, BMC Genomics. https://doi.org/10.1186/1471-2164-13-591 (Academic article)
Copynumber: Efficient algorithms for single and multi-track copy number segmentation. Nilsen, Gro; Liestøl, Knut; Van Loo, P; Vollan, Hans Kristian Moen; Eide, Marianne Brodtkorb; Rueda, Oscar M.; Chin, Suet-Feung; Russel, Roslin; Baumbusch, Lars Oliver; Caldas, Carlos et al.. 2012, BMC Genomics. https://doi.org/10.1186/1471-2164-13-591 (Academic article)
Genomic Regions Associated with Multiple Sclerosis Are Active in B Cells. Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Morahan, Julia; Dobson, Ruth; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0032281 (Academic article)
Genomic Regions Associated with Multiple Sclerosis Are Active in B Cells. Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Morahan, Julia; Dobson, Ruth; Giovannoni, Gavin & Ramagopalan, Sreeram V. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0032281 (Academic article)
Genomsekvensering for persontilpasset kreftbehandling. Skotheim, Rolf Inge; Meza-Zepeda, Leonardo Andrés; Hovig, Eivind; Lønning, Per Eystein; Lothe, Ragnhild A & Myklebost, Ola. 2012, Tidsskrift for Den norske legeforening. https://doi.org/10.4045/tidsskr.12.0784 (Feature article)
Genomsekvensering for persontilpasset kreftbehandling. Skotheim, Rolf Inge; Meza-Zepeda, Leonardo Andrés; Hovig, Eivind; Lønning, Per Eystein; Lothe, Ragnhild A & Myklebost, Ola. 2012, Tidsskrift for Den norske legeforening. https://doi.org/10.4045/tidsskr.12.0784 (Feature article)
High-resolution analyses of copy number changes in disseminated tumor cells of patients with breast cancer. Ruud Mathiesen, Randi Margit; Fjelldal, Renathe; Liestøl, Knut; Due, Eldri Undlien; Geigl, Jochen; Riethdorf, Sabine; Borgen, Elin; Rye, Inga Hansine; Schneider, Ida Johansson; Obenauf, Anna et al.. 2012, International Journal of Cancer. https://doi.org/10.1002/ijc.26444 (Academic article)
High-resolution analyses of copy number changes in disseminated tumor cells of patients with breast cancer. Ruud Mathiesen, Randi Margit; Fjelldal, Renathe; Liestøl, Knut; Due, Eldri Undlien; Geigl, Jochen; Riethdorf, Sabine; Borgen, Elin; Rye, Inga Hansine; Schneider, Ida Johansson; Obenauf, Anna et al.. 2012, International Journal of Cancer. https://doi.org/10.1002/ijc.26444 (Academic article)
Identification and Characterization of Novel Mutations in the Human Gene Encoding the Catalytic Subunit Calpha of Protein Kinase A (PKA). Søberg, Kristoffer; Larsen, Anja C V; Diskar, Mandy; Backe, Paul Hoff; Bjørås, Magnar; Jahnsen, Tore; Lærdahl, Jon Kristen; Rognes, Torbjørn; Herberg, Friedrich W. & Skålhegg, Bjørn Steen. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0034838 (Academic article)
Identification and Characterization of Novel Mutations in the Human Gene Encoding the Catalytic Subunit Calpha of Protein Kinase A (PKA). Søberg, Kristoffer; Larsen, Anja C V; Diskar, Mandy; Backe, Paul Hoff; Bjørås, Magnar; Jahnsen, Tore; Lærdahl, Jon Kristen; Rognes, Torbjørn; Herberg, Friedrich W. & Skålhegg, Bjørn Steen. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0034838 (Academic article)
Importance of physical fitness on the predictive effect of body mass index and weight gain on incident atrial fibrillation in healthy middle-aged men. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Gjesdal, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2012, American Journal of Cardiology. https://doi.org/10.1016/j.amjcard.2012.03.043 (Academic article)
Importance of physical fitness on the predictive effect of body mass index and weight gain on incident atrial fibrillation in healthy middle-aged men. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Gjesdal, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2012, American Journal of Cardiology. https://doi.org/10.1016/j.amjcard.2012.03.043 (Academic article)
Increased expression of IRF4 and ETS1 in CD4(+) cells from patients with intermittent allergic rhinitis. Bruhn, Sören; Barrenäs, Fredrik; Mobini, R; Andersson, B; Chavali, S.; Egan, B. S.; Hovig, Eivind; Sandve, Geir Kjetil; Langston, M. A.; Rogers, Gary et al.. 2012, Allergy. European Journal of Allergy and Clinical Immunology. https://doi.org/10.1111/j.1398-9995.2011.02707.x (Academic article)
Increased expression of IRF4 and ETS1 in CD4(+) cells from patients with intermittent allergic rhinitis. Bruhn, Sören; Barrenäs, Fredrik; Mobini, R; Andersson, B; Chavali, S.; Egan, B. S.; Hovig, Eivind; Sandve, Geir Kjetil; Langston, M. A.; Rogers, Gary et al.. 2012, Allergy. European Journal of Allergy and Clinical Immunology. https://doi.org/10.1111/j.1398-9995.2011.02707.x (Academic article)
Integrative Analysis Reveals Relationships of Genetic and Epigenetic Alterations in Osteosarcoma. Kresse, Stine Henrichson; Rydbeck, Halfdan; Skårn, Magne; Namløs, Heidi Maria; Barragan Polania, Ana H.; Cleton-Jansen, Anne-Marie; Serra, Massimo; Liestøl, Knut; Hogendoorn, Pancras C. W.; Hovig, Eivind et al.. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0048262 (Academic article)
Integrative Analysis Reveals Relationships of Genetic and Epigenetic Alterations in Osteosarcoma. Kresse, Stine Henrichson; Rydbeck, Halfdan; Skårn, Magne; Namløs, Heidi Maria; Barragan Polania, Ana H.; Cleton-Jansen, Anne-Marie; Serra, Massimo; Liestøl, Knut; Hogendoorn, Pancras C. W.; Hovig, Eivind et al.. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0048262 (Academic article)
Intermuscular relationship of human muscle fiber type proportions: Slow leg muscles predict slow neck muscles. Vikne, Harald; Gundersen, Kristian; Liestøl, Knut; Mæhlen, Jan & Vøllestad, Nina Køpke. 2012, Muscle and Nerve. https://doi.org/10.1002/mus.22315 (Academic article)
Intermuscular relationship of human muscle fiber type proportions: Slow leg muscles predict slow neck muscles. Vikne, Harald; Gundersen, Kristian; Liestøl, Knut; Mæhlen, Jan & Vøllestad, Nina Køpke. 2012, Muscle and Nerve. https://doi.org/10.1002/mus.22315 (Academic article)
Low-grade systolic murmurs in healthy middle-aged individuals: innocent or clinically significant? A 35-year follow-up study of 2014 Norwegian men. Bodegard, Johan; Skretteberg, Torger; Gjesdal, Knut; Pyöräla, Kalevi; Kjeldsen, Sverre Erik; Liestøl, Knut; Erikssen, Gunnar & Erikssen, Jan Emil. 2012, Journal of Internal Medicine. https://doi.org/10.1111/j.1365-2796.2011.02480.x (Academic article)
Low-grade systolic murmurs in healthy middle-aged individuals: innocent or clinically significant? A 35-year follow-up study of 2014 Norwegian men. Bodegard, Johan; Skretteberg, Torger; Gjesdal, Knut; Pyöräla, Kalevi; Kjeldsen, Sverre Erik; Liestøl, Knut; Erikssen, Gunnar & Erikssen, Jan Emil. 2012, Journal of Internal Medicine. https://doi.org/10.1111/j.1365-2796.2011.02480.x (Academic article)
Performance comparison of multiple microarray platforms for gene expression profiling. Liu, Fang; Kuo, Patrick Winston; Jenssen, Tor-Kristian & Hovig, Eivind. 2012, Methods in molecular biology. https://doi.org/10.1007/978-1-61779-400-1_10 (Academic article)
Performance comparison of multiple microarray platforms for gene expression profiling. Liu, Fang; Kuo, Patrick Winston; Jenssen, Tor-Kristian & Hovig, Eivind. 2012, Methods in molecular biology. https://doi.org/10.1007/978-1-61779-400-1_10 (Academic article)
Polymorphisms in genes encoding interleukin-10 and drug metabolizing enzymes GSTP1, GSTT1, GSTA1 and UGT1A1 influence risk and outcome in Hodgkin lymphoma. Yri, Olav Erich; Ekstrøm, Per Olaf; Hilden, Vera Irene; Gaudernack, Gustav; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2012, Leukemia and Lymphoma. https://doi.org/10.3109/10428194.2012.682307 (Academic article)
Polymorphisms in genes encoding interleukin-10 and drug metabolizing enzymes GSTP1, GSTT1, GSTA1 and UGT1A1 influence risk and outcome in Hodgkin lymphoma. Yri, Olav Erich; Ekstrøm, Per Olaf; Hilden, Vera Irene; Gaudernack, Gustav; Liestøl, Knut; Smeland, Erlend B & Holte, Harald. 2012, Leukemia and Lymphoma. https://doi.org/10.3109/10428194.2012.682307 (Academic article)
Potent Gene Silencing In Vitro at Physiological pH Using Chitosan Polymers. Jørgensen, Jens Andreas Lindin; Hovig, Eivind & Bøe, Sigurd. 2012, Nucleic Acid Therapeutics. https://doi.org/10.1089/nat.2011.0335 (Academic article)
Potent Gene Silencing In Vitro at Physiological pH Using Chitosan Polymers. Jørgensen, Jens Andreas Lindin; Hovig, Eivind & Bøe, Sigurd. 2012, Nucleic Acid Therapeutics. https://doi.org/10.1089/nat.2011.0335 (Academic article)
Proffered Paper: Dissecting the Genetic Components of Breast Cancer Transcriptomes. Nord, S; Lingjærde, Ole Christian; Nebdal, D; Sun, W.; Alnaes, GIG; Van Loo, P; Naume, Bjørn; Børresen-Dale, Anne-Lise & Kristensen, Vessela N.. 2012, European Journal of Cancer. (Abstract)
Proffered Paper: Dissecting the Genetic Components of Breast Cancer Transcriptomes. Nord, S; Lingjærde, Ole Christian; Nebdal, D; Sun, W.; Alnaes, GIG; Van Loo, P; Naume, Bjørn; Børresen-Dale, Anne-Lise & Kristensen, Vessela N.. 2012, European Journal of Cancer. (Abstract)
Role of Smad Proteins in Resistance to BMP-Induced Growth Inhibition in B-Cell Lymphoma. Huse, Kanutte; Bakkebø, Maren; Waelchli, Sebastien; Oksvold, Morten Pedersen; Hilden, Vera Irene; Forfang, Lise; Bredahl, May K. Lyamouri; Liestøl, Knut; Alizadeh, Ash A.; Smeland, Erlend B et al.. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0046117 (Academic article)
Role of Smad Proteins in Resistance to BMP-Induced Growth Inhibition in B-Cell Lymphoma. Huse, Kanutte; Bakkebø, Maren; Waelchli, Sebastien; Oksvold, Morten Pedersen; Hilden, Vera Irene; Forfang, Lise; Bredahl, May K. Lyamouri; Liestøl, Knut; Alizadeh, Ash A.; Smeland, Erlend B et al.. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0046117 (Academic article)
Sequential ADP-stimulated light transmission and multiple electrode aggregometry in patients taking aspirin and clopidogrel after non ST-elevation myocardial infarction. Meen, Øystein; Brosstad, Frank Roger; Liestøl, Knut; Kunszt, Gabor; Bendz, Bjørn; Wettergreen, Marianne; Schjelderup, NM; Andreassen, Trine & Erikssen, Gunnar. 2012, Scandinavian Journal of Clinical and Laboratory Investigation. https://doi.org/10.3109/00365513.2012.666565 (Academic article)
Sequential ADP-stimulated light transmission and multiple electrode aggregometry in patients taking aspirin and clopidogrel after non ST-elevation myocardial infarction. Meen, Øystein; Brosstad, Frank Roger; Liestøl, Knut; Kunszt, Gabor; Bendz, Bjørn; Wettergreen, Marianne; Schjelderup, NM; Andreassen, Trine & Erikssen, Gunnar. 2012, Scandinavian Journal of Clinical and Laboratory Investigation. https://doi.org/10.3109/00365513.2012.666565 (Academic article)
Seven-year increase in exercise systolic blood pressure at 100w predicts long-term risk of coronary heart disease in healthy middle-aged men. Skretteberg, Per Torger; Grundvold, Irene; Kjeldsen, Sverre Erik; Gjesdal, Knut; Liestøl, Knut; Erikssen, Jan Emil; Erikssen, Gunnar & Bodegard, Johan. 2012, Journal of the American College of Cardiology. https://doi.org/10.1016/S0735-1097(12)61628-3 (Abstract)
Seven-year increase in exercise systolic blood pressure at 100w predicts long-term risk of coronary heart disease in healthy middle-aged men. Skretteberg, Per Torger; Grundvold, Irene; Kjeldsen, Sverre Erik; Gjesdal, Knut; Liestøl, Knut; Erikssen, Jan Emil; Erikssen, Gunnar & Bodegard, Johan. 2012, Journal of the American College of Cardiology. https://doi.org/10.1016/S0735-1097(12)61628-3 (Abstract)
The apolipoprotein E polymorphism and cardiovascular diseases-an autopsy study. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael; Brorson, Sverre Henning & Mæhlen, Jan. 2012, Cardiovascular pathology. https://doi.org/10.1016/j.carpath.2012.02.005 (Academic article)
The apolipoprotein E polymorphism and cardiovascular diseases-an autopsy study. Kumar, Neena Theresa; Liestøl, Knut; Løberg, Else Marit; Reims, Henrik Mikael; Brorson, Sverre Henning & Mæhlen, Jan. 2012, Cardiovascular pathology. https://doi.org/10.1016/j.carpath.2012.02.005 (Academic article)
The PtdIns3P-Binding Protein Phafin 2 Mediates Epidermal Growth Factor Receptor Degradation by Promoting Endosome Fusion. Pedersen, Nina Marie; Raiborg, Camilla; Brech, Andreas; Skarpen, Ellen; Roxrud, Ingrid; Platta, Harald W.; Liestøl, Knut & Stenmark, Harald Alfred. 2012, Traffic: The moving front of cell biology. https://doi.org/10.1111/j.1600-0854.2012.01400.x (Academic article)
The PtdIns3P-Binding Protein Phafin 2 Mediates Epidermal Growth Factor Receptor Degradation by Promoting Endosome Fusion. Pedersen, Nina Marie; Raiborg, Camilla; Brech, Andreas; Skarpen, Ellen; Roxrud, Ingrid; Platta, Harald W.; Liestøl, Knut & Stenmark, Harald Alfred. 2012, Traffic: The moving front of cell biology. https://doi.org/10.1111/j.1600-0854.2012.01400.x (Academic article)
The Terminal Part of the QT Interval (T peak to T end): A Predictor of Mortality after Acute Myocardial Infarction. Erikssen, Gunnar; Liestøl, Knut; Gullestad, Lars; Haugaa, Kristina; Bendz, Bjørn & Amlie, Jan Peder. 2012, Annals of Noninvasive Electrocardiology. https://doi.org/10.1111/j.1542-474X.2012.00493.x (Academic article)
The Terminal Part of the QT Interval (T peak to T end): A Predictor of Mortality after Acute Myocardial Infarction. Erikssen, Gunnar; Liestøl, Knut; Gullestad, Lars; Haugaa, Kristina; Bendz, Bjørn & Amlie, Jan Peder. 2012, Annals of Noninvasive Electrocardiology. https://doi.org/10.1111/j.1542-474X.2012.00493.x (Academic article)
Towards a quantitative understanding of the MITF-PIAS3-STAT3 connection. Thingnes, Josef; Lavelle, Timothy J.; Gjuvsland, Arne Bjørke; Omholt, Stig W & Hovig, Eivind. 2012, BMC Systems Biology. https://doi.org/10.1186/1752-0509-6-11 (Academic article)
Towards a quantitative understanding of the MITF-PIAS3-STAT3 connection. Thingnes, Josef; Lavelle, Timothy J.; Gjuvsland, Arne Bjørke; Omholt, Stig W & Hovig, Eivind. 2012, BMC Systems Biology. https://doi.org/10.1186/1752-0509-6-11 (Academic article)
Understanding the Melanocyte Distribution in Human Epidermis: An Agent-Based Computational Model Approach. Thingnes, Josef; Lavelle, Timothy J.; Hovig, Eivind & Omholt, Stig W. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0040377 (Academic article)
Understanding the Melanocyte Distribution in Human Epidermis: An Agent-Based Computational Model Approach. Thingnes, Josef; Lavelle, Timothy J.; Hovig, Eivind & Omholt, Stig W. 2012, PLOS ONE. https://doi.org/10.1371/journal.pone.0040377 (Academic article)
Upper Normal Blood Pressures Predict Incident Atrial Fibrillation in Healthy Middle-Aged Men A 35-Year Follow-Up Study. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2012, Hypertension. https://doi.org/10.1161/HYPERTENSIONAHA.111.179713 (Academic article)
Upper Normal Blood Pressures Predict Incident Atrial Fibrillation in Healthy Middle-Aged Men A 35-Year Follow-Up Study. Grundvold, Irene; Skretteberg, Torger; Liestøl, Knut; Erikssen, Gunnar; Kjeldsen, Sverre Erik; Arnesen, Harald; Erikssen, Jan Emil & Bodegard, Johan. 2012, Hypertension. https://doi.org/10.1161/HYPERTENSIONAHA.111.179713 (Academic article)
Vitamin D receptor binding, chromatin states and association with multiple sclerosis. Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Ragnedda, Giammario; Morahan, Julia; Watson, Corey T; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V. 2012, Human Molecular Genetics. https://doi.org/10.1093/hmg/dds189 (Academic article)
Vitamin D receptor binding, chromatin states and association with multiple sclerosis. Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Ragnedda, Giammario; Morahan, Julia; Watson, Corey T; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V. 2012, Human Molecular Genetics. https://doi.org/10.1093/hmg/dds189 (Academic article)