News
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Network with over a million human genomes becomes available for research Nov. 18, 2022 3:23 PM
In the long term, this could have a major impact on personalized medicine.
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Bacterial genes in the faeces can reveal early colorectal cancer Nov. 18, 2022 1:12 PM
Scientists are now analysing all the genes in the intestinal content of thousands of people. The aim is to reveal the early phase of colorectal cancer by looking at the microbiota in the bowel.
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New group leader at the Centre for Bioinformatics May 20, 2022 9:18 AM
The centre for Bioinformatics is delighted to announce that Dr. Trine Rounge has started as a new group leader at the centre from May 2022. Rounge group aims to unravel the molecular mechanisms that can detect and explain cancer progression at an early stage.
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MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions Apr. 28, 2022 9:21 PM
"MoDLE is a computational tool for fast, stochastic modeling of molecular contacts from DNA loop extrusion capable of simulating realistic contact patterns genome wide in a few minutes. MoDLE accurately simulates contact maps in concordance with existing molecular dynamics approaches and with Micro-C data, and does so orders of magnitude faster than existing approaches. MoDLE's speed opens up for exploratory and predictive modeling of 3D genome structure in a wide range of settings", says Jonas Paulsen, professor at the Department of Biosciences.
Events
Sven Furberg Seminars in Bioinformatics and Statistical Genomics
The latest publications from the Centre
Re: Spatially Resolved Clonal Copy Number Alterations in Benign and Malignant Tissue
Eur Urol (in press)
DOI 10.1016/j.eururo.2022.11.013, PubMed 36464529
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions
Genome Biol, 23 (1), 247
DOI 10.1186/s13059-022-02815-7, PubMed 36451166
The link between liver fat and cardiometabolic diseases is highlighted by genome-wide association study of MRI-derived measures of body composition
Commun Biol, 5 (1), 1271
DOI 10.1038/s42003-022-04237-4, PubMed 36402844
Software developed at the centre
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CARMA
Software for extraction of DNA copy number motifs in cancer
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Chimeraviz
Chimeraviz manages data from fusion gene finders and provides useful visualization tools.
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CompAIRR
Comparison of Adaptive Immune Receptor Repertoires
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Genomic HyperBrowser
Statistical methodology and computing power to handle a variety of biological inquires on genomic datasets
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HoCoRT
Host contamination removal tool
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immuneML
immuneML: an ecosystem for machine learning analysis of adaptive immune receptor repertoires
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KAGE
Kmer-based Alignment-free Graph Genotyper
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MoDLE
MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions
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ScaR
ScaR — a tool for sensitive detection of known fusion transcripts: establishing prevalence of fusions in testicular germ cell tumors
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Swarm
Highly-scalable and high-resolution amplicon clustering
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VSEARCH
A versatile open source tool for metagenomics
Collaborations
ELIXIR Norway
ELIXIR Norway is the Norwegian national node of ELIXIR, the pan-European infrastructure for biological information, supporting life science research and its translation to medicine, environment, the bioindustries and society. This organization is a virtual organization where the Center of Bioinformatics hosts the regional Oslo node. It participates to the national help-desk user support, and in that activity also collaborates and coordinates closely with the Helse Sør-Øst-funded Bioinformatics Core facility.
Partners and collaborating organizational units
