Eric De Muinck
Researcher
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Centre for Ecological and Evolutionary Synthesis
Email
e.de.muinck@ibv.uio.no
Username
Visiting address
Blindernveien 31
None
0371 OSLO
Postal address
Postboks 1066 Blindern
0316 OSLO
My interests are in bacterial-bacterial and bacterial-host interactions that help determine microbial community structures and how these structures may eventually impact host-health. My background is in molecular biology, microbiology and microbial ecology. Previous work has included tracking and characterizing E. coli strain dynamics and interactions in a cohort of mothers and their infants. We also performed genome analysis of these isolates in order to understand strain genotype-phenotype links that help determine colonization patterning.
We are currently running the project "Modelling microbial dynamics in the human infant gut" with the Principal Investigator Dr. Pål Trosvik (CEES, Institute of Life Science, UiO). This projects aim is to develop quantitative models of the gut microbial community as a dynamic ecosystem including predictive models of human infant gut bacterial dynamics.
Publications
- de Muinck, Eric & Trosvik, Pål (2018). Individuality and convergence of the infant gut microbiota during the first year of life. Nature Communications. ISSN 2041-1723. 9(1), s 1- 8 . doi: 10.1038/s41467-018-04641-7 Full text in Research Archive.
- Trosvik, Pål; de Muinck, Eric; Rueness, Eli Knispel; Fashing, Peter; Beierschmitt, Evan C.; Callingham, Kadie R.; Kraus, Jacob B.; Trew, Thomas H.; Moges, Amera; Mekonnen, Addisu; Venkataraman, Vivek V. & Nguyen, Nga (2018). Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate.. Microbiome. ISSN 2049-2618. 6(84), s 1- 18 . doi: 10.1186/s40168-018-0468-6
- Trosvik, Pål; Rueness, Eli Knispel; de Muinck, Eric; Moges, Amera & Mekonnen, Addisu (2018). Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys. Scientific Reports. ISSN 2045-2322. 8(1), s 1- 10 . doi: 10.1038/s41598-017-18435-2 Full text in Research Archive.
- de Muinck, Eric; Lundin, Knut Erik Aslaksen & Trosvik, Pål (2017). Linking Spatial Structure and Community-Level Biotic Interactions through Cooccurrence and Time Series Modeling of the Human Intestinal Microbiota. mSystems. ISSN 2379-5077. 2(5) . doi: 10.1128/mSystems.00086-17 Full text in Research Archive.
- de Muinck, Eric; Trosvik, Pål; Gilfillan, Gregor Duncan; Hov, Johannes Espolin Roksund & Sundaram, Arvind (2017). A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform. Microbiome. ISSN 2049-2618. . doi: 10.1186/s40168-017-0279-1
- Liljegren, Mikkel Meyn; De Muinck, Eric & Trosvik, Pål (2016). Microsatellite length scoring by single molecule real time sequencing - Effects of sequence structure and PCR regime. PLOS ONE. ISSN 1932-6203. 11(7), s 1- 17 . doi: 10.1371/journal.pone.0159232
- Tapia, German; Bøås, Håkon; De Muinck, Eric; Cinek, Ondrej; Stene, Lars Christian; Torjesen, Peter A; Rasmussen, Trond & Rønningen, Kjersti Skjold (2015). Saffold Virus, a Human Cardiovirus, and Risk of Persistent Islet Autoantibodies in the Longitudinal Birth Cohort Study MIDIA. PLOS ONE. ISSN 1932-6203. 10(8) . doi: 10.1371/journal.pone.0136849 Full text in Research Archive.
- Trosvik, Pål & De Muinck, Eric (2015). Ecology of bacteria in the human gastrointestinal tract — identification of keystone and foundation taxa. Microbiome. ISSN 2049-2618. 3(44), s 1- 12 . doi: 10.1186/s40168-015-0107-4
- Trosvik, Pål; De Muinck, Eric & Stenseth, Nils Christian (2015). Biotic interactions and temporal dynamics of the human gastrointestinal microbiota. The ISME Journal. ISSN 1751-7362. 9(3), s 533- 541 . doi: 10.1038/ismej.2014.147
- De Muinck, Eric; Lagesen, Karin; Afset, Jan Egil; Didelot, Xavier; Rønningen, Kjersti Skjold; Rudi, Knut; Stenseth, Nils Christian & Trosvik, Pål (2013). Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche. BMC Genomics. ISSN 1471-2164. 14 . doi: 10.1186/1471-2164-14-81 Full text in Research Archive.
- De Muinck, Eric; Stenseth, Nils Christian; Sachse, Daniel; Vander Roost, Jan Pieter; Rønningen, Kjersti Skjold; Rudi, Knut & Trosvik, Pål (2013). Context-Dependent Competition in a Model Gut Bacterial Community. PLOS ONE. ISSN 1932-6203. 8(6) . doi: 10.1371/journal.pone.0067210 Full text in Research Archive.
- de Muinck, Eric; Øien, Torbjørn; Storrø, Ola; Johnsen, Roar; Stenseth, Nils Christian; Rønningen, Kjersti Skjold & Rudi, Knut (2011). Diversity, transmission and persistence of Escherichia coli in a cohort of mothers and their infants. Environmental Microbiology Reports. ISSN 1758-2229. 3(3), s 352- 359 . doi: 10.1111/j.1758-2229.2010.00231.x
- Roell, Marc-Sven; Noordzij, Hanna Theodora; Skar Mjønes, Caroline; Boye, Ole; Levchenko, Vladimir; Kimara, Chiharu; Ramberg, Sigmund; Lycke, Max; Mathiesen, Bård Enger; de Muinck, Eric; Grini, Paul Eivind & Linke, Dirk (2015). Methane Incorporated.
- Roell, Marc-Sven; Noordzij, Hanna Theodora; Skar Mjønes, Caroline; Boye, Ole; Levchenko, Vladimir; Kimara, Chiharu; Ramberg, Sigmund; Lycke, Max; Mathiesen, Bård Enger; De Muinck, Eric; Grini, Paul Eivind & Linke, Dirk (2015). Methane Incorporated - iGEM Lecture.
- Trosvik, Pål & De Muinck, Eric (2014). Biotic interactions and temporal dynamics of the human GI microbiota.
- de Muinck, Eric; Stenseth, Nils Christian; Rønningen, Kjersti Skjold; Rudi, Knut & Trosvik, Pål (2013). Deep characterization of Escherichia coli in a cohort of mothers and their infants. Series of dissertations submitted to the Faculty of Mathematics and Natural Sciences, University of Oslo.. 1328.
- de Muinck, Eric (2012). Genome comparisons of infant Escherichia coli isolates.
Published May 26, 2011 9:51 PM
- Last modified Feb. 20, 2015 12:52 PM