Ave Tooming-Klunderud

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Phone +47 22854578
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Visiting address Blindernveien 31 0371 Oslo
Postal address Postboks 1066 Blindern 0316 Oslo

Scientific pledges

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Publications

  • Stenmark, Bianca; Harrison, Odile B.; Eriksson, Lorraine; Anton, Brian P.; Fomenkov, Alexey & Roberts, Richard J. [Show all 12 contributors for this article] (2020). Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease. Scientific Reports. ISSN 2045-2322. 10(1), p. 1–11. doi: 10.1038/s41598-020-59509-y. Full text in Research Archive
  • Hoff, Siv Nam Khang; Baalsrud, Helle Tessand; Tooming-Klunderud, Ave; Skage, Morten; Richmond, Todd & Obernosterer, Gregor [Show all 10 contributors for this article] (2018). Long‐read sequence capture of the haemoglobin gene clusters across codfish species. Molecular Ecology Resources. ISSN 1755-098X. 19(1), p. 245–259. doi: 10.1111/1755-0998.12955.
  • Tedersoo, Leho; Tooming-Klunderud, Ave & Anslan, Sten (2018). PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives. New Phytologist. ISSN 0028-646X. 217(3), p. 1370–1385. doi: 10.1111/nph.14776.
  • Lie, Kai Kristoffer; Tørresen, Ole K.; Solbakken, Monica Hongrø; Rønnestad, Ivar; Tooming-Klunderud, Ave & Nederbragt, Alexander Johan [Show all 8 contributors for this article] (2018). Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics. ISSN 1471-2164. 19(186), p. 1–17. doi: 10.1186/s12864-018-4570-8. Full text in Research Archive
  • Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Reinar, William Brynildsen; Grove, Harald & Miller, Jason R. [Show all 16 contributors for this article] (2017). An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics. ISSN 1471-2164. 18, p. 1–23. doi: 10.1186/s12864-016-3448-x. Full text in Research Archive
  • Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter & Nome, Torfinn [Show all 45 contributors for this article] (2016). The Atlantic salmon genome provides insights into rediploidization. Nature. ISSN 0028-0836. 533(7602), p. 200–205. doi: 10.1038/nature17164. Full text in Research Archive
  • Frank, Jeremy A.; Pan, Yao; Tooming-Klunderud, Ave; Eijsink, Vincent; McHardy, Alice C & Nederbragt, Alexander Johan [Show all 7 contributors for this article] (2016). Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports. ISSN 2045-2322. 6. doi: 10.1038/srep25373. Full text in Research Archive
  • Stokke, Runar; Dahle, Håkon; Roalkvam, Irene; Wissuwa, Juliane; Daae, Frida Lise & Tooming-Klunderud, Ave [Show all 9 contributors for this article] (2015). Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm. Environmental Microbiology. ISSN 1462-2912. 17(10), p. 4063–4077. doi: 10.1111/1462-2920.12970.
  • Baldo, Laura; Riera, Joan Lluis; Tooming-Klunderud, Ave; Alba, M. Mar & Salzburger, Walter (2015). Gut microbiota dynamics during dietary shift in eastern African cichlid fishes. PLOS ONE. ISSN 1932-6203. 10(5). doi: 10.1371/journal.pone.0127462. Full text in Research Archive
  • Xiao, Xi; Sogge, Hanne; Lagesen, Karin; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd & Rohrlack, Thomas (2014). Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment. PLOS ONE. ISSN 1932-6203. 9(8). doi: 10.1371/journal.pone.0106510. Full text in Research Archive
  • de Been, Mark; Lanza, Val F.; de Toro, Maria; Scharringa, Jelle; Dohmen, Wietske & Du, Yu [Show all 16 contributors for this article] (2014). Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages. PLoS Genetics. ISSN 1553-7390. 10(12). doi: 10.1371/journal.pgen.1004776. Full text in Research Archive
  • Brembu, Tore; Winge, Per; Tooming-Klunderud, Ave ; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd & Bones, Atle M. (2014). The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer. Marine Genomics. ISSN 1874-7787. 16(1), p. 17–27. doi: 10.1016/j.margen.2013.12.002.
  • Sogge, Hanne; Rohrlack, Thomas; Rounge, Trine Ballestad; Sønstebø, Jørn Henrik; Tooming-Klunderud, Ave & Kristensen, Tom [Show all 7 contributors for this article] (2013). Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix Freshwater Strains. Applied and Environmental Microbiology. ISSN 0099-2240. 79(2), p. 508–515. doi: 10.1128/AEM.02417-12. Full text in Research Archive
  • Tooming-Klunderud, Ave ; Sogge, Hanne; Rounge, Trine Ballestad; Nederbragt, Alexander Johan; Lagesen, Karin & Glöckner, Gernot [Show all 9 contributors for this article] (2013). From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between Planktothrix Strains. Applied and Environmental Microbiology. ISSN 0099-2240. 79(21), p. 6803–6812. doi: 10.1128/AEM.01455-13. Full text in Research Archive
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin & Gregers, Tone Fredsvik [Show all 42 contributors for this article] (2011). The genome sequence of Atlantic cod reveals a unique immune system. Nature. ISSN 0028-0836. 477(7363), p. 207–210. doi: 10.1038/nature10342. Full text in Research Archive
  • Andersen, Øivind; De Rosa, Maria Cristina; Pirolli, Davide; Tooming-Klunderud, Ave ; Petersen, Petra E & André, Carl (2011). Polymorphism, selection and tandem duplication of transferrin genes in Atlantic cod (Gadus morhua) - Conserved synteny between fish monolobal and tetrapod bilobal transferrin loci. BMC Genetics. ISSN 1471-2156. 12(51). doi: 10.1186/1471-2156-12-51.
  • Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave ; Patil, Viswanath & Nederbragt, Alexander Johan [Show all 11 contributors for this article] (2011). Genome Evolution of a Tertiary Dinoflagellate Plastid. PLOS ONE. ISSN 1932-6203. 6(4). doi: 10.1371/journal.pone.0019132.
  • Andersen, Øivind; Dahle, Stine Veronica Wiborg; van Nes, Solveig; Bardal, Tora; Tooming-Klunderud, Ave & Kjørsvik, Elin [Show all 7 contributors for this article] (2009). Differential spatio-temporal expression and functional diversification of the myogenic regulatory factors MyoD1 and MyoD2 in Atlantic halibut (Hippoglossus hippoglossus). Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology. ISSN 1096-4959. 154(1), p. 93–101. doi: 10.1016/j.cbpb.2009.05.009.
  • Tooming-Klunderud, Ave ; Mikalsen, Bjørg; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2008). The mosaic structure of the mcyABC operon in Microcystis. Microbiology (Reading). ISSN 1350-0872. 154, p. 1886–1899. doi: 10.1099/mic.0.2007/015875-0.
  • Tooming-Klunderud, Ave ; Fewer, DP; Rohrlack, Thomas; Jokela, J; Rouhiainen, L & Sivonen, K [Show all 8 contributors for this article] (2008). Evidence for positive selection acting on microcystin synthetase adenylation domains in three cyanobacterial genera. BMC Evolutionary Biology. ISSN 1471-2148. 8. doi: 10.1186/1471-2148-8-256.
  • Fewer, DP; Tooming-Klunderud, Ave ; Jokela, J; Wahsten, M; Rouhiainen, L & Kristensen, Tom [Show all 9 contributors for this article] (2008). Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria). Microbiology (Reading). ISSN 1350-0872. 154, p. 1007–1014. doi: 10.1099/mic.0.2007/016097-0.
  • Østbye, Tone-Kari K; Andersen, Øivind; Frang, Ola T; Tooming-Klunderud, Ave; Jakobsen, Kjetill S. & Yafe, Anat [Show all 8 contributors for this article] (2007). Molecular cloning of the Atlantic salmon activin receptor IIB cDNA - Localization of the receptor and myostatin in vivo and in vitro in muscle cells. Gene. ISSN 0378-1119. 403(01.feb), p. 159–169.
  • Tooming-Klunderud, Ave ; Rohrlack, Thomas; Shalchian-Tabrizi, Kamran; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2007). Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins. Microbiology (Reading). ISSN 1350-0872. 153(5), p. 1382–1393. doi: 10.1099/mic.0.2006/001123-0.
  • Østbye, Tone-Kari K; Wetten, Ola F.; Tooming-Klunderud, Ave ; Jakobsen, Kjetill Sigurd; Yafe, Anat & Etzioni, Shulamit [Show all 8 contributors for this article] (2007). Myostatin (MSTN) gene duplications in Atlantic salmon (Salmo salar): Evidence for different selective pressure on teleost MSTN-1 and -2. Gene. ISSN 0378-1119. 403, p. 159–169. doi: 10.1016/j.gene.2007.08.008.
  • Rounge, Trine Ballestad; Rohrlack, Thomas; Tooming-Klunderud, Ave ; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2007). Comparison of cyanopeptolin genes in Planktothrix, Microcystis, and Anabaena strains: Evidence for independent evolution within each genus. Applied and Environmental Microbiology. ISSN 0099-2240. 73, p. 7322–7330. doi: 10.1128/AEM.01475-07.

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  • Tørresen, Ole Kristian; Jentoft, Sissel; Star, Bastiaan; Sandve, Geir Kjetil F.; Skage, Morten & Hansen, Marianne Helén Selander [Show all 9 contributors for this article] (2014). A new, high quality reference genome assembly for Atlantic cod.
  • Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Skage, Morten; Tooming-Klunderud, Ave ; Hansen, Marianne Helén Selander & Jentoft, Sissel [Show all 9 contributors for this article] (2012). The long jump: Long distance mate pairs and long PacBio reads for the Salmon Genome Project.
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin & Gregers, Tone Fredsvik [Show all 18 contributors for this article] (2011). The genome of Atlantic cod reveals a unique immune system.
  • Tooming-Klunderud, Ave (2010). From next generation reads to genomes: experiences gained from different genome projects.
  • Tooming-Klunderud, Ave (2010). HIgh throughput sequencing at the Norwegian Sequencing Centre: possibilities and procedures.
  • Tooming-Klunderud, Ave (2010). 454 sequencing at the Norwegian Sequencing Centre: possibilities, procedures and projects.
  • Tooming-Klunderud, Ave (2010). Planktothrix genome project - from 454 reads to interesting results.
  • Dahle, Håkon; Roalkvam, Irene; Jørgensen, Steffen Leth; Hoem, Solveig; Mitra, Suparna & Huson, Daniel [Show all 10 contributors for this article] (2010). Microbial community structure of biomats and chimney walls of the Loki’s Castle hydrothermal field at 73°N.
  • Nederbragt, Alexander Johan & Tooming-Klunderud, Ave (2010). From next generation reads to genomes: experiences gained from different genome projects.
  • Grimholt, Unni; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Malmstrøm, Martin; Star, Bastiaan & Tooming-Klunderud, Ave [Show all 12 contributors for this article] (2009). The cod genome project.
  • Grimholt, Unni; Malmstrøm, Martin; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Jentoft, Sissel & Tooming-Klunderud, Ave [Show all 10 contributors for this article] (2009). The lack of cod MHC class II.
  • Tooming-Klunderud, Ave (2009). Cod genome project.
  • Tooming-Klunderud, Ave (2009). Library preparation for pyrosequencing.
  • Tooming-Klunderud, Ave ; Nederbragt, Alexander Johan; Skage, Morten & Jakobsen, Kjetill Sigurd (2009). The Ultra-high Throughput Sequencing Platform at the University of Oslo.

View all works in Cristin

Published May 26, 2011 9:50 PM - Last modified Oct. 25, 2021 1:13 PM

Projects

No ongoing projects