Bernd Thiede

Bilde av Bernd Thiede
English version of this page
Telefon +47 22840533
Rom 2303A
Brukernavn
Besøksadresse Blindernveien 31 0371 Oslo
Postadresse Postboks 1066 Blindern 0316 Oslo

Faglige interesser

Massespektrometri, proteomikk

Undervisning

BIOS3900

BIOS9980

BIOS4020
 

Bakgrunn

Proteomikk

Priser

 

Verv

 

Samarbeid

 

Emneord: Proteomikk, Massespektrometri, Biokjemi, Molekylærbiologi

Publikasjoner

1. Koehler, C.J., Arntzen, M.Ø., de Souza, G.A., Thiede, B. (2013) An approach for triplex-isobaric peptide termini labeling (Triplex-IPTL). Anal. Chem., 85, 2478-2485.

2. Thiede, B., Koehler, C.J., Strozynski, M., Treumann, A., Stein, R., Zimny-Arndt, U., Schmid, M., Jungblut, P.R. (2013) High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture (SILAC), two-dimensional gel electrophoresis (2DE) and nano-liquid chromatography coupled to an LTQ-Orbitrap mass spectrometer. Mol. Cell. Proteomics, 12, 529-538.

3. Arntzen, M.A., Boddie, P., Frick, R., Koehler, C.J., Thiede, B. (2015) Consolidation of proteomics data in the Cancer proteomics database. Proteomics, 15, 3765-3771.

4. Trung, T.T., Strozynski, M.A., Thiede, B. (2017) Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells, Proteomics, 17, 1600470.

5. Trung, T.T., Bollineni, R.C., Strozynski, M.A., Koehler, C.J., Thiede, B. (2017) Identification of alternative splice variants using unique tryptic peptide sequences for database searches, J. Proteome Res., 16, 2571-2578.

6. Bollineni, R.C., Koehler, C.J., Gislefoss, R.E., Anonsen, J.H., Thiede, B. (2018) Large-scale intact glycopeptide identification by Mascot database search. Sci. Rep. 8, 2117.

  • Hynne, Håvard; Aqrawi, Lara A.; Jensen, Janicke Liaaen; Thiede, Bernd; Palm, Øyvind & Amdal, Cecilie Delphin [Vis alle 10 forfattere av denne artikkelen] (2022). Proteomic Profiling of Saliva and Tears in Radiated Head and Neck Cancer Patients as Compared to Primary Sjögren’s Syndrome Patients. International Journal of Molecular Sciences. ISSN 1661-6596. 23(7). doi: 10.3390/ijms23073714.
  • Kallas, Pawel; Valen, Håkon; Hulander, Mats; Gadegaard, Nikolaj; Stormonth-Darling, John & O'Reilly, Padraic [Vis alle 9 forfattere av denne artikkelen] (2022). Protein-coated nanostructured surfaces affect the adhesion of Escherichia coli. Nanoscale. ISSN 2040-3364. doi: 10.1039/D2NR00976E. Fulltekst i vitenarkiv
  • Thiede, Bernd & Koehler, Christian (2021). An Approach for Triplex-IPTL. I Marcus, Katrin; Eisenacher, Martin & Sitek, Barbara (Red.), Quantitative Methods in Proteomics. Humana Press. ISSN 978-1-0716-1023-7. s. 133–144. doi: 10.1007/978-1-0716-1024-4_10. Fulltekst i vitenarkiv
  • Andersen, Elisabeth; Dugarte, Maria Eugenia Chollet; Sletten, Marit; Stavik, Benedicte; Skarpen, Ellen & Backe, Paul Hoff [Vis alle 9 forfattere av denne artikkelen] (2021). Molecular Characterization of Two Homozygous Factor VII Variants Associated with Intracranial Bleeding. Thrombosis and Haemostasis. ISSN 0340-6245. 121(12), s. 1588–1598. doi: 10.1055/a-1450-8568.
  • Johannsen, Christina; Koehler, Christian & Thiede, Bernd (2021). Comparison of LFQ and IPTL for Protein Identification and Relative Quantification. Molecules. ISSN 1420-3049. 26(17). doi: 10.3390/molecules26175330. Fulltekst i vitenarkiv
  • Malecki, Jedrzej Mieczyslaw; O'Donohue, Marie-Francoise; Kim, Yeji; Jakobsson, Magnus; Gessa, Luca & Pinto, Rita [Vis alle 14 forfattere av denne artikkelen] (2021). Human METTL18 is a histidine-specific methyltransferase that targets RPL3 and affects ribosome biogenesis and function. Nucleic Acids Research (NAR). ISSN 0305-1048. 49(6), s. 3185–3203. doi: 10.1093/nar/gkab088. Fulltekst i vitenarkiv
  • Krishnan, Aswini; Berthelet, Jean; Renaud, Emilie; Rosigkeit, Sebastian; Distler, Ute & Stawiski, Eric [Vis alle 17 forfattere av denne artikkelen] (2020). Proteogenomics analysis unveils a TFG-RET gene fusion and druggable targets in papillary thyroid carcinomas. Nature Communications. ISSN 2041-1723. 11. doi: 10.1038/s41467-020-15955-w. Fulltekst i vitenarkiv
  • Kara, Emrah; Nielsen, Nis Valentin; Eggertsdottir, Bergrun; Thiede, Bernd; Kanse, Sandip & Løset, Geir Åge (2020). Design and characterization of a new pVII combinatorial phage display peptide library for protease substrate mining using Factor VII activating protease (FSAP) as model. ChemBioChem. ISSN 1439-4227. 21(13), s. 1875–1884. doi: 10.1002/cbic.201900705. Fulltekst i vitenarkiv
  • Guldvik, Ingrid Jenny; Zuber, Verena; Braadland, Peder Rustøen; Grytli, Helene Hartvedt; Ramberg, Håkon Andre & Lilleby, Wolfgang [Vis alle 18 forfattere av denne artikkelen] (2020). Identification and Validation of Leucine-rich alpha-2-glycoprotein 1 as a Noninvasive Biomarker for Improved Precision in Prostate Cancer Risk Stratification. European Urology Open Science. ISSN 2666-1691. 21, s. 51–61. doi: 10.1016/j.euros.2020.08.007. Fulltekst i vitenarkiv
  • Perdreau-Dahl, Harmonie; Progida, Cinzia; Barfeld, Stefan Jörg; Guldsten, Hanne; Thiede, Bernd & Arntzen, Magnus Øverlie [Vis alle 10 forfattere av denne artikkelen] (2020). Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells. Communications Biology. ISSN 2399-3642. 3(1). doi: 10.1038/s42003-020-0851-2.
  • Khan, Ayyad Ahmad Zartasht; Jackson, Catherine; Utheim, Tor Paaske; Reppe, Sjur; Sapkota, Dipak & Olstad, Ole Kristoffer [Vis alle 8 forfattere av denne artikkelen] (2020). Sericin-induced melanogenesis in cultured retinal pigment epithelial cells is associated with elevated levels of hydrogen peroxide and inflammatory proteins. Molecules. ISSN 1420-3049. 25(19), s. 1–20. doi: 10.3390/molecules25194395. Fulltekst i vitenarkiv
  • Mazagão Guerreiro, Eduarda; Øvstebø, Reidun; Thiede, Bernd; Costea, Daniela Elena; Søland, Tine Merete & Galtung, Hilde (2020). Cancer cell line-specific protein profiles in extracellular vesicles identified by proteomics. PLOS ONE. ISSN 1932-6203. 15(9), s. 1–20. doi: 10.1371/journal.pone.0238591. Fulltekst i vitenarkiv
  • Solhaug, Anita; Torgersen, Maria Lyngaas; Holme, Jørn Andreas; Wiik-Nielsen, Jannicke; Thiede, Bernd & Eriksen, Gunnar Sundstøl (2020). The Fusarium mycotoxin, 2-Amino-14,16-dimethyloctadecan-3-ol (AOD) induces vacuolization in HepG2 cells. Toxicology. ISSN 0300-483X. s. 433–434. doi: 10.1016/j.tox.2020.152405. Fulltekst i vitenarkiv
  • Riegel, Kristina; Schlöder, Janine; Sobczak, Marco; Jonuleit, Helmut; Thiede, Bernd & Schild, Hansjörg [Vis alle 7 forfattere av denne artikkelen] (2019). RAF kinases are stabilized and required for dendritic cell differentiation and function. Cell Death and Differentiation. ISSN 1350-9047. 27, s. 1300–1315. doi: 10.1038/s41418-019-0416-4. Fulltekst i vitenarkiv
  • Wagner, Fabienne; Kunz, Tobias C.; Chowdhury, Suvagata R.; Thiede, Bernd; Fraunholz, Martin & Eger, Debora [Vis alle 7 forfattere av denne artikkelen] (2019). Armadillo repeat-containing protein 1 is a dual localization protein associated with mitochondrial intermembrane space bridging complex. PLOS ONE. ISSN 1932-6203. 14(10), s. 1–19. doi: 10.1371/journal.pone.0218303. Fulltekst i vitenarkiv
  • Byskov, Kristina; M. le Gall, Sylvain; Thiede, Bernd; Camerer, Eric & Kanse, Sandip (2019). Protease activated receptors (PAR)‐1 and ‐2 mediate cellular effects of factor VII activating protease (FSAP). The FASEB Journal. ISSN 0892-6638. 34, s. 1079–1090. doi: 10.1096/fj.201801986RR. Fulltekst i vitenarkiv
  • Koehler, Christian & Thiede, Bernd (2019). Predominant cleavage of proteins N-terminal to serines and threonines using scandium(III) triflate. JBIC Journal of Biological Inorganic Chemistry. ISSN 0949-8257. 25, s. 61–66. doi: 10.1007/s00775-019-01733-7. Fulltekst i vitenarkiv
  • Aqrawi, Lara Adnan; Galtung, Hilde; Guerreiro, Eduarda; Øvstebø, Reidun; Thiede, Bernd & Utheim, Tor Paaske [Vis alle 11 forfattere av denne artikkelen] (2019). Proteomic and histopathological characterisation of sicca subjects and primary Sjögren’s syndrome patients reveals promising tear, saliva and extracellular vesicle disease biomarkers. Arthritis Research & Therapy. ISSN 1478-6354. 21, s. 1–14. doi: 10.1186/s13075-019-1961-4. Fulltekst i vitenarkiv
  • Itkonen, Harri; Urbanucci, Alfonso; Sara ES, Martin; Khan, Aziz; Mathelier, Anthony & Thiede, Bernd [Vis alle 8 forfattere av denne artikkelen] (2019). High OGT activity is essential for MYC-driven proliferation of prostate cancer cells. Theranostics. ISSN 1838-7640. 9(8), s. 2183–2197. doi: 10.7150/thno.30834. Fulltekst i vitenarkiv
  • Abudu, Yakubu Princely; Pankiv, Serhiy; Mathai, Benan John; Lystad, Alf Håkon; Bindesbøll, Christian & Brenne, Hanne Britt [Vis alle 14 forfattere av denne artikkelen] (2019). NIPSNAP1 and NIPSNAP2 act as “eat-me signal” for mitophagy. Developmental Cell. ISSN 1534-5807. 49(4), s. 509–525.e12. doi: 10.1016/j.devcel.2019.03.013. Fulltekst i vitenarkiv
  • Buehler, Ulrike; Schulenburg, Katharina; Yurugi, Hajime; Solman, Maja; Abankwa, Daniel & Ulges, Alexander [Vis alle 11 forfattere av denne artikkelen] (2018). Targeting prohibitins at the cell surface prevents Th17-mediated autoimmunity. EMBO Journal. ISSN 0261-4189. 37:e99429(16), s. 1–14. doi: 10.15252/embj.201899429.
  • Skottvoll, Frøydis Sved; Berg, Henriette Engen; Bjørseth, Kamilla; Lund, Kaja; Roos, Norbert & Bekhradnia, Sara [Vis alle 13 forfattere av denne artikkelen] (2018). Ultracentrifugation versus kit exosome isolation: nanoLC-MS and other tools reveal similar performance biomarkers, but also contaminations. Future science OA. ISSN 2056-5623. 5(1). doi: 10.4155/fsoa-2018-0088. Fulltekst i vitenarkiv
  • Tran, Trung; Bollineni, Ravi Chand; Koehler, Christian & Thiede, Bernd (2018). Absolute two-point quantification of proteins using dimethylated proteotypic peptides. The Analyst. ISSN 0003-2654. 143(18), s. 4359–4365. doi: 10.1039/c8an01081a.
  • Aqrawi, Lara Adnan; Chen, Xiangjun; Jensen, Janicke Liaaen; Morthen, Mathias Kaurstad; Thiede, Bernd & Utheim, Øygunn Aass [Vis alle 10 forfattere av denne artikkelen] (2018). Severity of clinical dry eye manifestations influences protein expression in tear fluid of patients with primary Sjögren's syndrome. PLOS ONE. ISSN 1932-6203. 13:e0205762(10), s. 1–14. doi: 10.1371/journal.pone.0205762. Fulltekst i vitenarkiv
  • Dukic, Aleksandra; Gerbaud, Pascal; Guibourdenche, Jean; Thiede, Bernd; Tasken, Kjetil & Pidoux, Guillaume (2018). Ezrin-anchored PKA phosphorylates serine 369 and 373 on connexin 43 to enhance gap junction assembly, communication, and cell fusion. Biochemical Journal. ISSN 0264-6021. 475(2), s. 455–476. doi: 10.1042/BCJ20170529. Fulltekst i vitenarkiv
  • Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug & Thiede, Bernd (2018). Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports. ISSN 2045-2322. 8. doi: 10.1038/s41598-018-20331-2. Fulltekst i vitenarkiv
  • Pasovic, Lara; Utheim, Tor Paaske; Reppe, Sjur; Khan, Ayyad Ahmad Zartasht; Jackson, Catherine & Thiede, Bernd [Vis alle 9 forfattere av denne artikkelen] (2018). Improvement of storage medium for cultured human retinal pigment epithelial cells using factorial design. Scientific Reports. ISSN 2045-2322. 8(1). doi: 10.1038/s41598-018-24121-8. Fulltekst i vitenarkiv
  • Dugarte, Maria Eugenia Chollet; Andersen, Elisabeth; Skarpen, Ellen; Myklebust, Christiane Filion; Koehler, Christian & Morth, Jens Preben [Vis alle 12 forfattere av denne artikkelen] (2018). Factor VII deficiency: Unveiling the cellular and molecular mechanisms underlying Three model alterations of the enzyme catalytic domain. Biochimica et Biophysica Acta - Molecular Basis of Disease. ISSN 0925-4439. 1864(3), s. 660–667. doi: 10.1016/j.bbadis.2017.12.016.
  • Imre, Gergely; Berthelet, Jean; Heering, Jan; Kehrloesser, Sebastian; Melzer, Inga Maria & Lee, Byung Il [Vis alle 9 forfattere av denne artikkelen] (2017). Apoptosis inhibitor 5 is an endogenous inhibitor of caspase-2. EMBO Reports. ISSN 1469-221X. 18(5), s. 733–744. doi: 10.15252/embr.201643744. Fulltekst i vitenarkiv
  • Tran, Trung; Bollineni, Ravi Chand; Strozynski, Margarita Anna; Koehler, Christian & Thiede, Bernd (2017). Identification of Alternative Splice Variants Using Unique Tryptic Peptide Sequences for Database Searches. Journal of Proteome Research. ISSN 1535-3893. 16(7), s. 2571–2578. doi: 10.1021/acs.jproteome.7b00126.
  • Tran, Trung; Strozynski, Margarita Anna & Thiede, Bernd (2017). Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells. Proteomics. ISSN 1615-9853. 17(11). doi: 10.1002/pmic.201600470.
  • Barfeld, Stefan Jörg; Urbanucci, Alfonso; Itkonen, Harri; Fazli, Ladan; Hicks, Jessica L & Thiede, Bernd [Vis alle 10 forfattere av denne artikkelen] (2017). c-Myc antagonises the transcriptional activity of the androgen receptor in prostate cancer affecting key gene networks. EBioMedicine. ISSN 2352-3964. 18, s. 83–93. doi: 10.1016/j.ebiom.2017.04.006. Fulltekst i vitenarkiv
  • Stakkestad, Øystein; Lyngstadaas, Ståle Petter; Thiede, Bernd; Vondrasesek, Jiri; Skålhegg, Bjørn Steen & Reseland, Janne Elin (2017). Phosphorylation Modulates Ameloblastin Self-assembly and Ca2+ Binding. Frontiers in Physiology. ISSN 1664-042X. 8. doi: 10.3389/fphys.2017.00531. Fulltekst i vitenarkiv
  • Aqrawi, Lara Adnan; Galtung, Hilde; Vestad, Beate; Øvstebø, Reidun; Thiede, Bernd & Rusthen, Shermin [Vis alle 13 forfattere av denne artikkelen] (2017). Identification of potential saliva and tear biomarkers in primary Sjögren’s syndrome, utilising the extraction of extracellular vesicles and proteomics analysis. Arthritis Research & Therapy. ISSN 1478-6354. 19(1). doi: 10.1186/s13075-017-1228-x. Fulltekst i vitenarkiv
  • Koehler, Christian; Bollineni, Ravi Chand & Thiede, Bernd (2017). Application of the half decimal place rule to increase the peptide identification rate. Rapid Communications in Mass Spectrometry. ISSN 0951-4198. 31(2), s. 227–233. doi: 10.1002/rcm.7780. Fulltekst i vitenarkiv
  • Haatveit, Hanne Merethe; Wessel, Øystein; Markussen, Turhan; Lund, Morten; Thiede, Bernd & Nyman, Ingvild Berg [Vis alle 9 forfattere av denne artikkelen] (2017). Viral protein kinetics of piscine orthoreovirus infection in atlantic salmon blood cells. Viruses. ISSN 1999-4915. 9:49(3), s. 1–18. doi: 10.3390/v9030049. Fulltekst i vitenarkiv
  • Grundt, Kirsten; Thiede, Bernd & Østvold, Anne Carine (2017). Identification of kinases phosphorylating 13 sites in the nuclear, DNA-binding protein NUCKS. Biochimica et Biophysica Acta - Proteins and Proteomics. ISSN 1570-9639. 1865(3), s. 359–369. doi: 10.1016/j.bbapap.2016.12.009.
  • Lopez Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil & Thiede, Bernd [Vis alle 8 forfattere av denne artikkelen] (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle. ISSN 1538-4101. 16(10), s. 947–956. doi: 10.1080/15384101.2017.1310350. Fulltekst i vitenarkiv
  • Fiorito, Elisa; Sharma, Yogita; Gilfillan, Siv; Wang, Shixiong; Singh, Sachin Kumar & Somisetty, Venkata Satheesh [Vis alle 11 forfattere av denne artikkelen] (2016). CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions. Nucleic Acids Research (NAR). ISSN 0305-1048. 44, s. 10588–10602. doi: 10.1093/nar/gkw785.
  • Gerner, Lisa; Munack, Steffi; Temmerman, Koen; Lawrence-Dörner, Ann-Marie; Besir, Huseyin & Wilmanns, Matthias [Vis alle 10 forfattere av denne artikkelen] (2016). Data for the co-expression and purification of human recombinant CaMKK2 in complex with calmodulin in Escherichia coli. Data in Brief. ISSN 2352-3409. 8, s. 733–740. doi: 10.1016/j.dib.2016.06.033.
  • Olsen, Christel Moræus; Markussen, Turhan; Thiede, Bernd & Rimstad, Espen (2016). Infectious Salmon Anaemia Virus (ISAV) RNA Binding Protein Encoded by Segment 8 ORF2 and Its Interaction with ISAV and Intracellular Proteins. Viruses. ISSN 1999-4915. 8(2). doi: 10.3390/v8020052. Fulltekst i vitenarkiv
  • Gerner, Lisa; Munack, Steffi; Temmerman, Koen; Lawrence-Dörner, Ann-Marie; Besir, Huseyin & Wilmanns, Matthias [Vis alle 9 forfattere av denne artikkelen] (2016). Using the fluorescent properties of STO-609 as a tool to assist structure-function analyses of recombinant CaMKK2. Biochemical and Biophysical Research Communications - BBRC. ISSN 0006-291X. 476(2), s. 102–107. doi: 10.1016/j.bbrc.2016.05.045.
  • Bousquet, Paula; Sandvik, Joe Alexander; Arntzen, Magnus Øverlie; Edin, Nina Frederike J; Christoffersen, Stine & Krengel, Ute [Vis alle 8 forfattere av denne artikkelen] (2015). Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells. International Journal of Proteomics. ISSN 2090-2174. doi: 10.1155/2015/678527.
  • Bollineni, Ravi Chand; Guldvik, Ingrid Jenny; Grönberg, Henrik; Wiklund, Fredrik; Mills, Ian Geoffrey & Thiede, Bernd (2015). A differential protein solubility approach for the depletion of highly abundant proteins in plasma using ammonium sulfate. The Analyst. ISSN 0003-2654. 140(24), s. 8109–8117. doi: 10.1039/c5an01560j.
  • Chymkowitch, Pierre; Nguéa P, Aurélie; Aanes, Håvard; Koehler, Christian; Thiede, Bernd & Lorenz, Susanne [Vis alle 9 forfattere av denne artikkelen] (2015). Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes. Genome Research. ISSN 1088-9051. 25(6), s. 897–906. doi: 10.1101/gr.185793.114.
  • Øverbye, Anders; Skotland, Tore; Koehler, Christian; Thiede, Bernd; Seierstad, Therese & Berge, Viktor [Vis alle 8 forfattere av denne artikkelen] (2015). Identification of prostate cancer biomarkers in urinary exosomes. OncoTarget. ISSN 1949-2553. 6(30), s. 30357–30376. doi: 10.18632/oncotarget.4851.
  • Arntzen, Magnus Øverlie; Boddie, Paul; Frick, Rahel; Koehler, Christian & Thiede, Bernd (2015). Consolidation of proteomics data in the Cancer proteomics database. Proteomics. ISSN 1615-9853. 15(22), s. 3765–3771. doi: 10.1002/pmic.201500144.
  • Serguienko, Anastassia; Grad, Iwona; Wennerstrøm, Anna; Meza, Leonardo Zepeda; Thiede, Bernd & Stratford, Eva Wessel [Vis alle 8 forfattere av denne artikkelen] (2015). Metabolic reprogramming of metastatic breast cancer and melanoma by Let-7a microRNA. OncoTarget. ISSN 1949-2553. 6(4), s. 2451–2465. doi: 10.18632/oncotarget.3235.
  • Albrecht, Elke; Norheim, Frode; Thiede, Bernd; Holen, Torgeir; Ohashi, Tomoo & Schering, Lisa [Vis alle 12 forfattere av denne artikkelen] (2015). Irisin - A myth rather than an exercise-inducible myokine. Scientific Reports. ISSN 2045-2322. 5. doi: 10.1038/srep08889.
  • Koehler, Christian; Arntzen, Magnus Øverlie & Thiede, Bernd (2015). The impact of carbon-13 and deuterium on relative quantification of proteins using stable isotope diethyl labeling. Rapid Communications in Mass Spectrometry. ISSN 0951-4198. 29(9), s. 830–836. doi: 10.1002/rcm.7170.
  • Villa, Oscar ; Brookes, Steven J; Thiede, Bernd; Heijl, Lars; Lyngstadaas, Ståle Petter & Reseland, Janne Elin (2015). Subfractions of enamel matrix derivative differentially influence cytokine secretion from human oral fibroblasts. Journal of Tissue Engineering. ISSN 2041-7314. 6, s. 1–11. doi: 10.1177/2041731415575857. Fulltekst i vitenarkiv
  • Albrecht, Elke; norheim, frode; Thiede, Bernd; Lee, Sindre; Holen, Torgeir & Ohashi,, Tomoo [Vis alle 12 forfattere av denne artikkelen] (2015). Irisin – a myth rather than an exercise-inducible myokine. Scientific Reports. ISSN 2045-2322. doi: 10.1038/srep08889.
  • Glowinski, Frithjof; Holland, Carsten; Thiede, Bernd; Jungblut, Peter R. & Meyer, Thomas (2014). Analysis of T4SS-induced signaling by H. pylori using quantitative phosphoproteomics. Frontiers in Microbiology. ISSN 1664-302X. 5(JULY). doi: 10.3389/fmicb.2014.00356.
  • Haaland, Ingvild; Opsahl, Jill Anette; Berven, Frode; Reikvam, Håkon; Fredly, Hanne Kristin & Haugse, Ragnhild [Vis alle 11 forfattere av denne artikkelen] (2014). Molecular mechanisms of nutlin-3 involve acetylation of p53, histones and heat shock proteins in acute myeloid leukemia. Molecular Cancer. ISSN 1476-4598. 13(1:116). doi: 10.1186/1476-4598-13-116. Fulltekst i vitenarkiv
  • Frank, Matthias Johannes; Walter, Martin Sebastian; Rubert, Marina; Thiede, Bernd; Monjo Cabrer, Marta & Reseland, Janne Elin [Vis alle 8 forfattere av denne artikkelen] (2014). Cathodic polarization coats titanium based implant materials with enamel matrix derivate (EMD). Materials. ISSN 1996-1944. 7(3), s. 2210–2228. doi: 10.3390/ma7032210. Fulltekst i vitenarkiv
  • Pavlovic-Kozjak, Vera; Prell, F; Thiede, Bernd; Gotz, M; Wosiek, D & Ott, C [Vis alle 7 forfattere av denne artikkelen] (2014). C1orf163/RESA1 is a novel mitochondrial intermembrane space protein connected to respiratory chain assembly. Journal of Molecular Biology (JMB). ISSN 0022-2836. 426(4), s. 908–920. doi: 10.1016/j.jmb.2013.12.001.
  • Oldenburg Ruppelt, Anja; Delbarre, Erwan; Thiede, Bernd; Vigouroux, Corinne & Collas, Philippe (2014). Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes. Human Molecular Genetics. ISSN 0964-6906. 23(5), s. 1151–1162. doi: 10.1093/hmg/ddt509.
  • Callaway, A.; Kostrzewa, M.; Willershausen, B.; Schmidt, F.; Thiede, Bernd & Küpper, H. [Vis alle 7 forfattere av denne artikkelen] (2013). Identification of Lactobacilli from Deep Carious Lesions by Means of Species-Specific PCR and MALDI-TOF Mass Spectrometry. Clinical Laboratory. ISSN 1433-6510. 59(11-12), s. 1373–1379. doi: 10.7754/Clin.Lab.2013.121225.
  • Størvold, Gro Leite; Landskron, Johannes; Strozynski, Margarita Anna; Arntzen, Magnus; Koehler, Christian & Kalland, Maria Elisabeth [Vis alle 8 forfattere av denne artikkelen] (2013). Quantitative profiling of tyrosine phosphorylation revealed changes in the activity of the T cell receptor signaling pathway upon cisplatin-induced apoptosis. Journal of Proteomics. ISSN 1874-3919. 91, s. 344–357. doi: 10.1016/j.jprot.2013.07.019.
  • Arczewska, Katarzyna; Tomazella, Gisele Guicardi; Lindvall, Jessica M.; Kassahun, Henok; Maglioni, Silvia & Torgovnick, Alessandro [Vis alle 17 forfattere av denne artikkelen] (2013). Active Transcriptomic and Proteomic Reprogramming in the C. elegans Nucleotide Excision Repair Mutant xpa-1. Nucleic Acids Research (NAR). ISSN 0305-1048. 41(10), s. 5368–5381. doi: 10.1093/nar/gkt225.
  • Murrell, Wayne; Palmero, Emily Herrera; Bianco, John; Stangeland, Biljana; Joel, Mrinal & Paulson, Linda Marie [Vis alle 16 forfattere av denne artikkelen] (2013). Expansion of Multipotent Stem Cells from the Adult Human Brain. PLOS ONE. ISSN 1932-6203. 8(8). doi: 10.1371/journal.pone.0071334.
  • Moltu, Kristine; Bjørgo, Elisa; Berge, Torunn; Thiede, Bernd & Tasken, Kjetil (2013). A Proteomic Approach to Screening of Dynamic Changes in Detergent-Resistant Membranes from Activated Human Primary T Cells. Journal of Proteomics & Bioinformatics. ISSN 0974-276X. 6, s. 72–80. doi: 10.4172/jpb.1000264.
  • Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, Achim; Stein, Robert & Zimny-Arndt, Ursula [Vis alle 8 forfattere av denne artikkelen] (2013). High Resolution Quantitative Proteomics of HeLa Cells Protein Species Using Stable Isotope Labeling with Amino Acids in Cell Culture(SILAC), Two-Dimensional Gel Electrophoresis(2DE) and Nano-Liquid Chromatograpohy Coupled to an LTQ-OrbitrapMass Spectrometer. Molecular & Cellular Proteomics. ISSN 1535-9476. 12(2), s. 529–538. doi: 10.1074/mcp.M112.019372.
  • Arntzen, Magnus; Bull, Vibeke Hervik & Thiede, Bernd (2013). Cell Death Proteomics Database: Consolidating proteomics data on cell death. Journal of Proteome Research. ISSN 1535-3893. 12(5), s. 2206–2213. doi: 10.1021/pr4000703.
  • Koehler, Christian; Arntzen, Magnus; De Souza, Gustavo Antonio & Thiede, Bernd (2013). An Approach for Triplex-Isobaric Peptide Termini Labeling (Triplex-IPTL). Analytical Chemistry. ISSN 0003-2700. 85(4), s. 2478–2485. doi: 10.1021/ac3035508.
  • Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). A Rapid Approach for Isobaric Peptide Termini Labeling. Methods in molecular biology. ISSN 1064-3745. 893, s. 129–141. doi: 10.1007/978-1-61779-885-6_10.
  • Tomazella, Gisele Guicardi; Kassahun, Henok; Nilsen, Hilde & Thiede, Bernd (2012). Quantitative Proteome Analysis Reveals RNA Processing Factors As Modulators of Ionizing Radiation-Induced Apoptosis in the C. elegans Germline. Journal of Proteome Research. ISSN 1535-3893. 11(8), s. 4277–4288. doi: 10.1021/pr300386z.
  • Bull, Vibeke Hervik & Thiede, Bernd (2012). Proteome analysis of tunicamycin-induced ER stress. Electrophoresis. ISSN 0173-0835. 33(12), s. 1814–1823. doi: 10.1002/elps.201100565.
  • Patron, Juan P.; Fendler, Annika; Bild, Matthias; Jung, Ulrike; Müller, Henrik & Arntzen, Magnus [Vis alle 13 forfattere av denne artikkelen] (2012). MiR-133b Targets Antiapoptotic Genes and Enhances Death Receptor-Induced Apoptosis. PLOS ONE. ISSN 1932-6203. 7(4). doi: 10.1371/journal.pone.0035345.
  • Khan, R; Rukke, HV; Ricomini, AP; Fimland, G; Arntzen, Magnus & Thiede, Bernd [Vis alle 7 forfattere av denne artikkelen] (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology. ISSN 0021-9193. 194(15), s. 3781–3788. doi: 10.1128/JB.00624-12.
  • Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Analytical and Bioanalytical Chemistry. ISSN 1618-2642. 404(4), s. 1103–1114. doi: 10.1007/s00216-012-5949-z.
  • Imre, Gergely; Heering, Jan; Takeda, Armelle-Natsuo; Husmann, Matthias; Thiede, Bernd & Heringdorf, Dagmar Meyer zu [Vis alle 11 forfattere av denne artikkelen] (2012). Caspase-2 is an initiator caspase responsible for pore-forming toxin-mediated apoptosis. EMBO Journal. ISSN 0261-4189. 31(11), s. 2615–2628. doi: 10.1038/emboj.2012.93.
  • Ott, Christine; Ross, Katharina; Straub, Sebastian; Thiede, Bernd; Götz, Monika & Goosmann, Christian [Vis alle 11 forfattere av denne artikkelen] (2012). Sam50 Functions in Mitochondrial Intermembrane Space Bridging and Biogenesis of Respiratory Complexes. Molecular and Cellular Biology. ISSN 0270-7306. 32(6), s. 1173–1188. doi: 10.1128/MCB.06388-11.
  • Bull, Vibeke Hervik; Rajalingam, Krishnaraj & Thiede, Bernd (2012). Sorafenib-Induced Mitochondrial Complex I Inactivation and Cell Death in Human Neuroblastoma Cells. Journal of Proteome Research. ISSN 1535-3893. 11(3), s. 1609–1620. doi: 10.1021/pr200790e.

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  • Bakketeig, Eris Aas; Olsen, Christine; Berg, Henriette Engen; Nyman, Tuula Anneli; Thiede, Bernd & Lundanes, Elsa [Vis alle 8 forfattere av denne artikkelen] (2021). Optimization of concatenation of fractions in comprehensive two dimensional liquid chromatography bottom-up proteomics.
  • Hanson, Ingunn; Pitman, Kathinka Elinor; Thiede, Bernd; Cai, Yiqing & Edin, Nina Frederike Jeppesen (2021). Proteomic Analysis of Low Dose-Rate Primed Cells and Extracellular Exosomes.
  • Dugarte, Maria Eugenia Chollet; andersen, elisabeth; de la Morena-Barrio, Maria Eugenia; Bravo-Perez, Carlos; Mowinckel, Marie-Christine & Myklebust, Christiane Fillion [Vis alle 12 forfattere av denne artikkelen] (2020). Characterizing Coagulation FVII from iPSC-Hepatocytes-like Cells: Setting the Basis for Cell Therapy Development. Blood. ISSN 0006-4971. 136. doi: 10.1182/blood-2020-139211.
  • Hanson, Ingunn; Edin, Nina Frederike J; Thiede, Bernd & Altanerova, Ursula (2020). Communication of radioprotective efects by TGF-β3.
  • Hanson, Ingunn; Altanerova, Ursula; Thiede, Bernd & Edin, Nina Frederike J (2020). Radioprotector TGF-β3 is secreted in exosomes and activated by LDR priming.
  • Berg, Henriette Engen; Halldórsson, Skarphéðinn; Thiede, Bernd; Vik-Mo, Einar O.; Lundanes, Elsa & Wilson, Steven Ray Haakon (2020). Micro pillar array columns for comprehensive proteomics.
  • Berg, Henriette Engen; Skottvoll, Frøydis Sved; Bjørseth, Kamilla; Sæterdal, Kristina Erikstad; Brandtzaeg, Ole Kristian & Vehus, Tore [Vis alle 11 forfattere av denne artikkelen] (2018). Development of nanoLC column technology for proteomic studies .
  • Eriksen, Gunnar Sundstøl; Thiede, Bernd & Solhaug, Anita (2018). Effects of an emerging Fusarium mycotoxin on hepatocytes.
  • Khan, Ayyad Ahmad Zartasht; Jackson, Catherine; Reppe, Sjur; Utheim, Tor Paaske; Olstad, Ole Kristoffer & Thiede, Bernd [Vis alle 7 forfattere av denne artikkelen] (2018). Sericin-Induced Melanogenesis in Cultured Retinal Pigment Epithelium is Associated with Elevated Levels of Hydrogen Peroxide.
  • Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug & Thiede, Bernd (2018). Author Correction: Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports. ISSN 2045-2322. 8. doi: 10.1038/s41598-018-28147-w.
  • López-Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil & Thiede, Bernd [Vis alle 8 forfattere av denne artikkelen] (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle. ISSN 1538-4101. 16(10), s. 947–956. doi: 10.1080/15384101.2017.1310350..
  • Sved Skottvoll, Frøydis; Lund, Kaja; Røberg-Larsen, Hanne; Berg, Henriette Sjånes; Thiede, Bernd & Lundanes, Elsa [Vis alle 7 forfattere av denne artikkelen] (2017). Diagnostic potential of exosomes: The purification issue.
  • Jensen, Janicke Liaaen; Utheim, Øygunn Aass; Chen, Xiangjun; Thiede, Bernd; Aqrawi, Lara Adnan & Rusthen, Shermin [Vis alle 9 forfattere av denne artikkelen] (2016). Searching for Disease Biomarkers for Primary Sjögren’s Syndrome Based on Oral and Ocular Patient Examinations.
  • Jungblut, Peter R.; Thiede, Bernd & Schluter, H (2016). Towards deciphering proteomes via the proteoform, protein speciation, moonlighting and protein code concepts. Journal of Proteomics. ISSN 1874-3919. 134, s. 1–4. doi: 10.1016/j.jprot.2016.01.012.
  • Lopez Soop, Graciela; Reiner, Andrew Henry; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas Michel (2015). Regulation of Normal Mitotic Progression by A-kinase Anchoring Protein 95 (AKAP95).
  • Perdreau, Harmonie; Guldsten, Hanne; Progida, Cinzia; Thiede, Bernd; Bakke, Oddmund & Morth, Jens Preben (2014). Molecular and Structural Characterization of Sjögren syndrome/scleroderma autoantigen 1 (SSSCA1).
  • Bousquet, Paula; Abshiru, Nebiyu; Sandvik, Joe Alexander; Pettersen, Erik O; Thiede, Bernd & Woods, Robert [Vis alle 8 forfattere av denne artikkelen] (2014). Anti-tumor antibodies and hypoxia.
  • Arntzen, Magnus & Thiede, Bernd (2013). Cell Death Proteomics.
  • Bousquet, Paula; Abshiru, Nebiyu; Johansen, Rune Forstrøm; Bjørås, Magnar; Sandvik, Joe Alexander & Pettersen, Erik O [Vis alle 10 forfattere av denne artikkelen] (2013). A structural and functional study of anti-ganglioside antibodies. International Journal of Molecular Medicine. ISSN 1107-3756. 32, s. S42–S42.
  • Perdreau, Harmonie; Barfeld, Stefan; Guldsten, Hanne; Thiede, Bernd; Mills, Ian Geoffrey & Morth, Jens Preben (2013). Molecular and Structural Characterization of Sjögren syndrome/scleroderma autoantigen 1, a new binding partner of Tankyrase regulated by the oncogene c-Myc.
  • Bousquet, Paula; Thiede, Bernd; Moreno, Ernesto & Krengel, Ute (2012). Antitumor antibodies - Crystallization and MS analysis.
  • Demko, Viktor; Ako, Ako Eugene; Perroud, Pierre-Francois; Liang, Zhe; Johansen, Wenche & Wilson, Robert [Vis alle 10 forfattere av denne artikkelen] (2012). Searching for cellular targets of the plant calpain DEK1.
  • Khan, Rabia; Rukke, Håkon Valen; Filho, Antonio Pedro Ricomini; Fimland, Gunnar; Arntzen, Magnus & Thiede, Bernd [Vis alle 7 forfattere av denne artikkelen] (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology. ISSN 0021-9193. 194(15), s. 3781–3788. Fulltekst i vitenarkiv
  • Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, A; Stein, Robert & Zimny-Amdt, Ursula [Vis alle 8 forfattere av denne artikkelen] (2012). Protein species high resolution quantitative proteomics of HeLa cells using SILAC-2-DE-nanoLC/LTQ-Orbitrap mass spectrometry. Molecular & Cellular Proteomics. ISSN 1535-9476. doi: 10.1074/mcp.M112.019372.
  • Bakketeig, Eris Aas; Wilson, Steven Ray Haakon; Lundanes, Elsa; Berg, Henriette Engen; Olsen, Christine & Reubsaet, Leon [Vis alle 8 forfattere av denne artikkelen] (2021). The setup and optimization of a complete global proteomics two-dimensional liquid chromatography system, using Spider Fractionation. Universitetet i Oslo, Det matematisk-naturvitenskapelige fakultet.
  • Köhler, Christian Jeffrey; Thiede, Bernd; Lundanes, Elsa & Greibrokk, Tyge (2013). Isobaric peptide termini labeling (IPTL) - An alternative approach for quantitative proteomics. Universitetet i Oslo.

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Publisert 12. nov. 2015 15:22 - Sist endret 24. nov. 2020 08:26

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