Bernd Thiede

Bilde av Bernd Thiede
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Telefon +47 22840533
Rom 2303A
Brukernavn
Besøksadresse Blindernveien 31 0371 Oslo
Postadresse Postboks 1066 Blindern 0316 Oslo

Faglige interesser

Massespektrometri, proteomikk

Undervisning

BIOS3900

BIOS9980

BIOS4020
 

Bakgrunn

Proteomikk

Priser

 

Verv

 

Samarbeid

 

Emneord: Proteomikk, Massespektrometri, Biokjemi, Molekylærbiologi

Publikasjoner

1. Koehler, C.J., Arntzen, M.Ø., de Souza, G.A., Thiede, B. (2013) An approach for triplex-isobaric peptide termini labeling (Triplex-IPTL). Anal. Chem., 85, 2478-2485.

2. Thiede, B., Koehler, C.J., Strozynski, M., Treumann, A., Stein, R., Zimny-Arndt, U., Schmid, M., Jungblut, P.R. (2013) High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture (SILAC), two-dimensional gel electrophoresis (2DE) and nano-liquid chromatography coupled to an LTQ-Orbitrap mass spectrometer. Mol. Cell. Proteomics, 12, 529-538.

3. Arntzen, M.A., Boddie, P., Frick, R., Koehler, C.J., Thiede, B. (2015) Consolidation of proteomics data in the Cancer proteomics database. Proteomics, 15, 3765-3771.

4. Trung, T.T., Strozynski, M.A., Thiede, B. (2017) Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells, Proteomics, 17, 1600470.

5. Trung, T.T., Bollineni, R.C., Strozynski, M.A., Koehler, C.J., Thiede, B. (2017) Identification of alternative splice variants using unique tryptic peptide sequences for database searches, J. Proteome Res., 16, 2571-2578.

6. Bollineni, R.C., Koehler, C.J., Gislefoss, R.E., Anonsen, J.H., Thiede, B. (2018) Large-scale intact glycopeptide identification by Mascot database search. Sci. Rep. 8, 2117.

  • Byskov, Kristina; Le Gall, Sylvain; Thiede, Bernd; Camerer, Eric & Kanse, Sandip M (2020). Protease activated receptors (PAR)-1 and -2 mediate cellular effects of factor VII activating protease (FSAP).. The FASEB Journal.  ISSN 0892-6638.  34, s 1079- 1090
  • Khan, Ayyad Ahmad Zartasht; Jackson, Catherine; Utheim, Tor Paaske; Reppe, Sjur; Sapkota, Dipak; Olstad, Ole Kristoffer; Thiede, Bernd & Eidet, Jon Roger (2020). Sericin-induced melanogenesis in cultured retinal pigment epithelial cells is associated with elevated levels of hydrogen peroxide and inflammatory proteins. Molecules.  ISSN 1420-3049.  25:4395(19), s 1- 20 . doi: 10.3390/molecules25194395
  • Mazagão Guerreiro, Eduarda; Øvstebø, Reidun; Thiede, Bernd; Costea, Daniela Elena; Søland, Tine Merete & Galtung, Hilde (2020). Cancer cell line-specific protein profiles in extracellular vesicles identified by proteomics. PLOS ONE.  ISSN 1932-6203.  15:e0238591(9), s 1- 20 . doi: 10.1371/journal.pone.0238591 Fulltekst i vitenarkiv.
  • Perdreau-Dahl, Harmonie; Progida, Cinzia; Barfeld, Stefan Jörg; Guldsten, Hanne; Thiede, Bernd; Arntzen, Magnus Øverlie; Bakke, Oddmund; Mills, Ian Geoffrey; Krauss, Stefan & Morth, Jens Preben (2020). Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells. Communications Biology.  ISSN 2399-3642.  3(1) . doi: 10.1038/s42003-020-0851-2
  • Solhaug, Anita; Torgersen, Maria Lyngaas; Holme, Jørn Andreas; Wiik-Nielsen, Jannicke; Thiede, Bernd & Eriksen, Gunnar Sundstøl (2020). The Fusarium mycotoxin, 2-Amino-14,16-dimethyloctadecan-3-ol (AOD) induces vacuolization in HepG2 cells. Toxicology.  ISSN 0300-483X.  s 433- 434 . doi: 10.1016/j.tox.2020.152405 Fulltekst i vitenarkiv.
  • Abudu, Yakubu Princely; Pankiv, Serhiy; Mathai, Benan John; Lystad, Alf Håkon; Bindesbøll, Christian; Brenne, Hanne Britt; Ng, Matthew Yoke Wui; Thiede, Bernd; Yamamoto, Ai; Nthiga, Thaddaeus Mutugi; Lamark, Trond; Esguerra, Camila Vicencio; Johansen, Terje & Simonsen, Anne (2019). NIPSNAP1 and NIPSNAP2 act as “eat-me signal” for mitophagy. Developmental Cell.  ISSN 1534-5807.  49(4), s 509- 525.e12 . doi: 10.1016/j.devcel.2019.03.013 Fulltekst i vitenarkiv.
  • Aqrawi, Lara Adnan; Galtung, Hilde; Guerreiro, Eduarda; Øvstebø, Reidun; Thiede, Bernd; Utheim, Tor Paaske; Chen, Xiangjun; Utheim, Øygunn Aass; Palm, Øyvind; Skarstein, Kathrine & Jensen, Janicke Liaaen (2019). Proteomic and histopathological characterisation of sicca subjects and primary Sjögren’s syndrome patients reveals promising tear, saliva and extracellular vesicle disease biomarkers. Arthritis Research & Therapy.  ISSN 1478-6354.  21, s 1- 14 . doi: 10.1186/s13075-019-1961-4 Fulltekst i vitenarkiv.
  • Byskov, Kristina; M. le Gall, Sylvain; Thiede, Bernd; Camerer, Eric & Kanse, Sandip (2019). Protease activated receptors (PAR)‐1 and ‐2 mediate cellular effects of factor VII activating protease (FSAP).. The FASEB Journal.  ISSN 0892-6638.  34, s 1079- 1090 . doi: 10.1096/fj.201801986RR Fulltekst i vitenarkiv.
  • Itkonen, Harri; Urbanucci, Alfonso; Sara ES, Martin; Khan, Aziz; Mathelier, Anthony; Thiede, Bernd; Walker, Suzanne & Mills, Ian Geoffrey (2019). High OGT activity is essential for MYC-driven proliferation of prostate cancer cells. Theranostics.  ISSN 1838-7640.  9(8), s 2183- 2197 . doi: 10.7150/thno.30834 Fulltekst i vitenarkiv.
  • Koehler, Christian & Thiede, Bernd (2019). Predominant cleavage of proteins N-terminal to serines and threonines using scandium(III) triflate. Journal of Biological Inorganic Chemistry.  ISSN 0949-8257.  25, s 61- 66 . doi: 10.1007/s00775-019-01733-7 Fulltekst i vitenarkiv.
  • Riegel, Kristina; Schlöder, Janine; Sobczak, Marco; Jonuleit, Helmut; Thiede, Bernd; Schild, Hansjörg & Rajalingam, Krishnaraj (2019). RAF kinases are stabilized and required for dendritic cell differentiation and function. Cell Death and Differentiation.  ISSN 1350-9047.  27, s 1300- 1315 . doi: 10.1038/s41418-019-0416-4 Fulltekst i vitenarkiv.
  • Wagner, Fabienne; Kunz, Tobias C.; Chowdhury, Suvagata R.; Thiede, Bernd; Fraunholz, Martin; Eger, Debora & Kozjak-Pavlovic, Vera (2019). Armadillo repeat-containing protein 1 is a dual localization protein associated with mitochondrial intermembrane space bridging complex. PLOS ONE.  ISSN 1932-6203.  14(10), s 1- 19 . doi: 10.1371/journal.pone.0218303 Fulltekst i vitenarkiv.
  • Aqrawi, Lara Adnan; Chen, Xiangjun; Jensen, Janicke Liaaen; Morthen, Mathias Kaurstad; Thiede, Bernd; Utheim, Øygunn Aass; Palm, Øyvind; Tashbayev, Behzod; Utheim, Tor Paaske & Galtung, Hilde (2018). Severity of clinical dry eye manifestations influences protein expression in tear fluid of patients with primary Sjögren's syndrome. PLOS ONE.  ISSN 1932-6203.  13:e0205762(10), s 1- 14 . doi: 10.1371/journal.pone.0205762 Fulltekst i vitenarkiv.
  • Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug & Thiede, Bernd (2018). Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports.  ISSN 2045-2322.  8 . doi: 10.1038/s41598-018-20331-2 Fulltekst i vitenarkiv.
  • Buehler, Ulrike; Schulenburg, Katharina; Yurugi, Hajime; Solman, Maja; Abankwa, Daniel; Ulges, Alexander; Tenzer, Stefan; Bopp, Tobias; Thiede, Bernd; Zipp, Frauke & Rajalingam, Krishnaraj (2018). Targeting prohibitins at the cell surface prevents Th17-mediated autoimmunity. EMBO Journal.  ISSN 0261-4189.  37:e99429(16), s 1- 14 . doi: 10.15252/embj.201899429
  • Dugarte, Maria Eugenia Chollet; Andersen, Elisabeth; Skarpen, Ellen; Myklebust, Christiane Filion; Koehler, Christian; Morth, Jens Preben; Chuansumrit, Ampaiwan; Pinotti, Mirko; Bernardi, Francesco; Thiede, Bernd; Sandset, Per Morten & Skretting, Grethe (2018). Factor VII deficiency: Unveiling the cellular and molecular mechanisms underlying Three model alterations of the enzyme catalytic domain. Biochimica et Biophysica Acta - Molecular Basis of Disease.  ISSN 0925-4439.  1864(3), s 660- 667 . doi: 10.1016/j.bbadis.2017.12.016
  • Dukic, Aleksandra; Gerbaud, Pascal; Guibourdenche, Jean; Thiede, Bernd; Tasken, Kjetil & Pidoux, Guillaume (2018). Ezrin-anchored PKA phosphorylates serine 369 and 373 on connexin 43 to enhance gap junction assembly, communication, and cell fusion. Biochemical Journal.  ISSN 0264-6021.  475(2), s 455- 476 . doi: 10.1042/BCJ20170529 Fulltekst i vitenarkiv.
  • Pasovic, Lara; Utheim, Tor Paaske; Reppe, Sjur; Khan, Ayyad Ahmad Zartasht; Jackson, Catherine; Thiede, Bernd; Berg, Jens Petter; Messelt, Edvard Berger & Eidet, Jon Roger (2018). Improvement of storage medium for cultured human retinal pigment epithelial cells using factorial design. Scientific Reports.  ISSN 2045-2322.  8(1) . doi: 10.1038/s41598-018-24121-8 Fulltekst i vitenarkiv.
  • Skottvoll, Frøydis Sved; Berg, Henriette Engen; Bjørseth, Kamilla; Lund, Kaja; Roos, Norbert; Bekhradnia, Sara; Thiede, Bernd; Sandberg, Cecilie; Vik-Mo, Einar O.; Røberg-Larsen, Hanne; Nyström, Bo; Lundanes, Elsa & Wilson, Steven Ray Haakon (2018). Ultracentrifugation versus kit exosome isolation: nanoLC-MS and other tools reveal similar performance biomarkers, but also contaminations. Future science OA.  ISSN 2056-5623.  5(1) . doi: 10.4155/fsoa-2018-0088 Fulltekst i vitenarkiv.
  • Tran, Trung; Bollineni, Ravi Chand; Koehler, Christian & Thiede, Bernd (2018). Absolute two-point quantification of proteins using dimethylated proteotypic peptides. The Analyst.  ISSN 0003-2654.  143(18), s 4359- 4365 . doi: 10.1039/c8an01081a
  • Aqrawi, Lara Adnan; Galtung, Hilde; Vestad, Beate; Øvstebø, Reidun; Thiede, Bernd; Rusthen, Shermin; Young, Alix; Guerreiro, Eduarda; Utheim, Tor Paaske; Chen, Xiangjun; Utheim, Øygunn Aass; Palm, Øyvind & Jensen, Janicke Liaaen (2017). Identification of potential saliva and tear biomarkers in primary Sjögren’s syndrome, utilising the extraction of extracellular vesicles and proteomics analysis. Arthritis Research & Therapy.  ISSN 1478-6354.  19(1) . doi: 10.1186/s13075-017-1228-x Fulltekst i vitenarkiv.
  • Barfeld, Stefan Jörg; Urbanucci, Alfonso; Itkonen, Harri; Fazli, Ladan; Hicks, Jessica L; Thiede, Bernd; Rennie, Paul S.; Yegnasubramanian, Srinivasan; DeMarzo, Angelo M. & Mills, Ian Geoffrey (2017). c-Myc antagonises the transcriptional activity of the androgen receptor in prostate cancer affecting key gene networks. EBioMedicine.  ISSN 2352-3964.  18, s 83- 93 . doi: 10.1016/j.ebiom.2017.04.006 Fulltekst i vitenarkiv.
  • Grundt, Kirsten; Thiede, Bernd & Østvold, Anne Carine (2017). Identification of kinases phosphorylating 13 sites in the nuclear, DNA-binding protein NUCKS. Biochimica et Biophysica Acta - Proteins and Proteomics.  ISSN 1570-9639.  1865(3), s 359- 369 . doi: 10.1016/j.bbapap.2016.12.009
  • Haatveit, Hanne Merethe; Wessel, Øystein; Markussen, Turhan; Lund, Morten; Thiede, Bernd; Nyman, Ingvild Berg; Braaen, Stine; Dahle, Maria Krudtaa & Rimstad, Espen (2017). Viral protein kinetics of piscine orthoreovirus infection in atlantic salmon blood cells. Viruses.  ISSN 1999-4915.  9:49(3), s 1- 18 . doi: 10.3390/v9030049 Fulltekst i vitenarkiv.
  • Imre, Gergely; Berthelet, Jean; Heering, Jan; Kehrloesser, Sebastian; Melzer, Inga Maria; Lee, Byung Il; Thiede, Bernd; Dötsch, Volker & Rajalingam, Krishnaraj (2017). Apoptosis inhibitor 5 is an endogenous inhibitor of caspase-2. EMBO Reports.  ISSN 1469-221X.  18(5), s 733- 744 . doi: 10.15252/embr.201643744 Fulltekst i vitenarkiv.
  • Koehler, Christian; Bollineni, Ravi Chand & Thiede, Bernd (2017). Application of the half decimal place rule to increase the peptide identification rate. Rapid Communications in Mass Spectrometry.  ISSN 0951-4198.  31(2), s 227- 233 . doi: 10.1002/rcm.7780 Fulltekst i vitenarkiv.
  • Lopez Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas M. (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle.  ISSN 1538-4101.  16(10), s 947- 956 . doi: 10.1080/15384101.2017.1310350 Fulltekst i vitenarkiv.
  • Stakkestad, Øystein; Lyngstadaas, Ståle Petter; Thiede, Bernd; Vondrasesek, Jiri; Skålhegg, Bjørn Steen & Reseland, Janne Elin (2017). Phosphorylation Modulates Ameloblastin Self-assembly and Ca2+ Binding. Frontiers in Physiology.  ISSN 1664-042X.  8 . doi: 10.3389/fphys.2017.00531 Fulltekst i vitenarkiv.
  • Tran, Trung; Bollineni, Ravi Chand; Strozynski, Margarita Anna; Koehler, Christian & Thiede, Bernd (2017). Identification of Alternative Splice Variants Using Unique Tryptic Peptide Sequences for Database Searches. Journal of Proteome Research.  ISSN 1535-3893.  16(7), s 2571- 2578 . doi: 10.1021/acs.jproteome.7b00126
  • Tran, Trung; Strozynski, Margarita Anna & Thiede, Bernd (2017). Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells. Proteomics.  ISSN 1615-9853.  17(11) . doi: 10.1002/pmic.201600470
  • Fiorito, Elisa; Sharma, Yogita; Gilfillan, Siv; Wang, Shixiong; Singh, Sachin Kumar; Somisetty, Venkata Satheesh; Madhumohan, Katika; Urbanucci, Alfonso; Thiede, Bernd; Mills, Ian Geoffrey & Rodriguez, Antoni Hurtado (2016). CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions. Nucleic Acids Research.  ISSN 0305-1048.  44, s 10588- 10602 . doi: 10.1093/nar/gkw785
  • Gerner, Lisa; Munack, Steffi; Temmerman, Koen; Lawrence-Dörner, Ann-Marie; Besir, Huseyin; Wilmanns, Matthias; Jensen, Jan Kristian; Thiede, Bernd; Mills, Ian Geoffrey & Morth, Jens Preben (2016). Data for the co-expression and purification of human recombinant CaMKK2 in complex with calmodulin in Escherichia coli. Data in Brief.  ISSN 2352-3409.  8, s 733- 740 . doi: 10.1016/j.dib.2016.06.033
  • Gerner, Lisa; Munack, Steffi; Temmerman, Koen; Lawrence-Dörner, Ann-Marie; Besir, Huseyin; Wilmanns, Matthias; Jensen, Jan Kristian; Thiede, Bernd; Mills, Ian Geoffrey & Morth, Jens Preben (2016). Using the fluorescent properties of STO-609 as a tool to assist structure-function analyses of recombinant CaMKK2. Biochemical and Biophysical Research Communications - BBRC.  ISSN 0006-291X.  476(2), s 102- 107 . doi: 10.1016/j.bbrc.2016.05.045
  • Olsen, Christel Moræus; Markussen, Turhan; Thiede, Bernd & Rimstad, Espen (2016). Infectious Salmon Anaemia Virus (ISAV) RNA Binding Protein Encoded by Segment 8 ORF2 and Its Interaction with ISAV and Intracellular Proteins. Viruses.  ISSN 1999-4915.  8(2) . doi: 10.3390/v8020052 Fulltekst i vitenarkiv.
  • Arntzen, Magnus Øverlie; Boddie, Paul; Frick, Rahel; Koehler, Christian & Thiede, Bernd (2015). Consolidation of proteomics data in the Cancer proteomics database. Proteomics.  ISSN 1615-9853.  15(22), s 3765- 3771 . doi: 10.1002/pmic.201500144
  • Albrecht, Elke; Norheim, Frode; Thiede, Bernd; Holen, Torgeir; Ohashi, Tomoo; Schering, Lisa; Lee, Sindre; Brenmoehl, Julia; Thomas, Selina; Drevon, Christian A; Erickson, Harold P & Maak, Steffen (2015). Irisin - A myth rather than an exercise-inducible myokine. Scientific Reports.  ISSN 2045-2322.  5 . doi: 10.1038/srep08889
  • Albrecht, Elke; norheim, frode; Thiede, Bernd; Lee, Sindre; Holen, Torgeir; Ohashi,, Tomoo; Schering, Lisa; Brenmoehl, Julia; Thomas, Selina; Drevon, Christian A; Erickson, Harold P & Maak, Steffen (2015). Irisin – a myth rather than an exercise-inducible myokine. Scientific Reports.  ISSN 2045-2322. . doi: 10.1038/srep08889
  • Bollineni, Ravi Chand; Guldvik, Ingrid Jenny; Grönberg, Henrik; Wiklund, Fredrik; Mills, Ian Geoffrey & Thiede, Bernd (2015). A differential protein solubility approach for the depletion of highly abundant proteins in plasma using ammonium sulfate. The Analyst.  ISSN 0003-2654.  140(24), s 8109- 8117 . doi: 10.1039/c5an01560j
  • Bousquet, Paula; Sandvik, Joe Alexander; Arntzen, Magnus Øverlie; Edin, Nina Frederike J; Christoffersen, Stine; Krengel, Ute; Pettersen, Erik O & Thiede, Bernd (2015). Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells. International Journal of Proteomics.  ISSN 2090-2174. . doi: 10.1155/2015/678527
  • Chymkowitch, Pierre; Nguéa P, Aurélie; Aanes, Håvard; Koehler, Christian; Thiede, Bernd; Lorenz, Susanne; Meza, Leonardo Zepeda; Klungland, Arne & Enserink, Jorrit (2015). Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes. Genome Research.  ISSN 1088-9051.  25(6), s 897- 906 . doi: 10.1101/gr.185793.114
  • Koehler, Christian; Arntzen, Magnus Øverlie & Thiede, Bernd (2015). The impact of carbon-13 and deuterium on relative quantification of proteins using stable isotope diethyl labeling. Rapid Communications in Mass Spectrometry.  ISSN 0951-4198.  29(9), s 830- 836 . doi: 10.1002/rcm.7170
  • Serguienko, Anastassia; Grad, Iwona; Wennerstrøm, Anna; Meza, Leonardo Zepeda; Thiede, Bernd; Stratford, Eva Wessel; Myklebost, Ola & Munthe, Else (2015). Metabolic reprogramming of metastatic breast cancer and melanoma by Let-7a microRNA. OncoTarget.  ISSN 1949-2553.  6(4), s 2451- 2465 . doi: 10.18632/oncotarget.3235
  • Villa, Oscar; Brookes, Steven J; Thiede, Bernd; Heijl, Lars; Lyngstadaas, Ståle Petter & Reseland, Janne Elin (2015). Subfractions of enamel matrix derivative differentially influence cytokine secretion from human oral fibroblasts. Journal of Tissue Engineering.  ISSN 2041-7314.  6, s 1- 11 . doi: 10.1177/2041731415575857 Fulltekst i vitenarkiv. Vis sammendrag
  • Øverbye, Anders; Skotland, Tore; Koehler, Christian; Thiede, Bernd; Seierstad, Therese; Berge, Viktor; Sandvig, Kirsten & Llorente, Alicia (2015). Identification of prostate cancer biomarkers in urinary exosomes. OncoTarget.  ISSN 1949-2553.  6(30), s 30357- 30376 . doi: 10.18632/oncotarget.4851
  • Frank, Matthias Johannes; Walter, Martin Sebastian; Rubert, Marina; Thiede, Bernd; Monjo Cabrer, Marta; Reseland, Janne Elin; Haugen, Håvard Jostein & Lyngstadaas, Ståle Petter (2014). Cathodic polarization coats titanium based implant materials with enamel matrix derivate (EMD). Materials.  ISSN 1996-1944.  7(3), s 2210- 2228 . doi: 10.3390/ma7032210 Fulltekst i vitenarkiv. Vis sammendrag
  • Glowinski, Frithjof; Holland, Carsten; Thiede, Bernd; Jungblut, Peter R. & Meyer, Thomas (2014). Analysis of T4SS-induced signaling by H. pylori using quantitative phosphoproteomics. Frontiers in Microbiology.  ISSN 1664-302X.  5(JULY) . doi: 10.3389/fmicb.2014.00356
  • Haaland, Ingvild; Opsahl, Jill Anette; Berven, Frode; Reikvam, Håkon; Fredly, Hanne Kristin; Haugse, Ragnhild; Thiede, Bernd; McCormack, Emmet; Lain, Sonia; Bruserud, Øystein & Gjertsen, Bjørn Tore (2014). Molecular mechanisms of nutlin-3 involve acetylation of p53, histones and heat shock proteins in acute myeloid leukemia. Molecular Cancer.  ISSN 1476-4598.  13(1:116) . doi: 10.1186/1476-4598-13-116 Fulltekst i vitenarkiv.
  • Oldenburg Ruppelt, Anja; Delbarre, Erwan; Thiede, Bernd; Vigouroux, Corinne & Collas, Philippe (2014). Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes. Human Molecular Genetics.  ISSN 0964-6906.  23(5), s 1151- 1162 . doi: 10.1093/hmg/ddt509
  • Pavlovic-Kozjak, Vera; Prell, F; Thiede, Bernd; Gotz, M; Wosiek, D; Ott, C & Rudel, T (2014). C1orf163/RESA1 is a novel mitochondrial intermembrane space protein connected to respiratory chain assembly. Journal of Molecular Biology (JMB).  ISSN 0022-2836.  426(4), s 908- 920 . doi: 10.1016/j.jmb.2013.12.001
  • Arczewska, Katarzyna; Tomazella, Gisele Guicardi; Lindvall, Jessica M.; Kassahun, Henok; Maglioni, Silvia; Torgovnick, Alessandro; Henriksson, Johan; Matilainen, Olli; Marquis, Bryce J.; Nelson, Bryant C.; Jaruga, Pawel; Babaie, Eshrat; Holmberg, Carina; Burglin, Thomas R.; Ventura, Natascia; Thiede, Bernd & Nilsen, Hilde (2013). Active Transcriptomic and Proteomic Reprogramming in the C. elegans Nucleotide Excision Repair Mutant xpa-1. Nucleic Acids Research.  ISSN 0305-1048.  41(10), s 5368- 5381 . doi: 10.1093/nar/gkt225
  • Arntzen, Magnus; Bull, Vibeke Hervik & Thiede, Bernd (2013). Cell Death Proteomics Database: Consolidating proteomics data on cell death. Journal of Proteome Research.  ISSN 1535-3893.  12(5), s 2206- 2213 . doi: 10.1021/pr4000703
  • Callaway, A.; Kostrzewa, M.; Willershausen, B.; Schmidt, F.; Thiede, Bernd; Küpper, H. & Kneist, S. (2013). Identification of Lactobacilli from Deep Carious Lesions by Means of Species-Specific PCR and MALDI-TOF Mass Spectrometry. Clinical Laboratory.  ISSN 1433-6510.  59(11-12), s 1373- 1379 . doi: 10.7754/Clin.Lab.2013.121225
  • Koehler, Christian; Arntzen, Magnus; De Souza, Gustavo Antonio & Thiede, Bernd (2013). An Approach for Triplex-Isobaric Peptide Termini Labeling (Triplex-IPTL). Analytical Chemistry.  ISSN 0003-2700.  85(4), s 2478- 2485 . doi: 10.1021/ac3035508
  • Moltu, Kristine; Bjørgo, Elisa; Berge, Torunn; Thiede, Bernd & Tasken, Kjetil (2013). A Proteomic Approach to Screening of Dynamic Changes in Detergent-Resistant Membranes from Activated Human Primary T Cells. Journal of Proteomics & Bioinformatics.  ISSN 0974-276X.  6, s 72- 80 . doi: 10.4172/jpb.1000264
  • Murrell, Wayne; Palmero, Emily Herrera; Bianco, John; Stangeland, Biljana; Joel, Mrinal; Paulson, Linda Marie; Thiede, Bernd; Grieg, Zanina Zilic; Ramsnes, Ingunn; Skjellegrind, Håvard Kjesbu; Nygård, Ståle; Brandal, Petter; Sandberg, Cecilie; Vik-Mo, Einar O.; Palmero, Sheryl & Langmoen, Iver Arne (2013). Expansion of Multipotent Stem Cells from the Adult Human Brain. PLOS ONE.  ISSN 1932-6203.  8(8) . doi: 10.1371/journal.pone.0071334
  • Størvold, Gro Leite; Landskron, Johannes; Strozynski, Margarita Anna; Arntzen, Magnus; Koehler, Christian; Kalland, Maria Elisabeth; Tasken, Kjetil & Thiede, Bernd (2013). Quantitative profiling of tyrosine phosphorylation revealed changes in the activity of the T cell receptor signaling pathway upon cisplatin-induced apoptosis. Journal of Proteomics.  ISSN 1874-3919.  91, s 344- 357 . doi: 10.1016/j.jprot.2013.07.019
  • Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, Achim; Stein, Robert; Zimny-Arndt, Ursula; Schmid, Monika & Jungblut, Peter R. (2013). High Resolution Quantitative Proteomics of HeLa Cells Protein Species Using Stable Isotope Labeling with Amino Acids in Cell Culture(SILAC), Two-Dimensional Gel Electrophoresis(2DE) and Nano-Liquid Chromatograpohy Coupled to an LTQ-OrbitrapMass Spectrometer. Molecular & Cellular Proteomics.  ISSN 1535-9476.  12(2), s 529- 538 . doi: 10.1074/mcp.M112.019372
  • Tomazella, Gisele Guiqardi; Risberg, Kine; Mylvaganam, Haima; Lindemann, Paul Christoffer; Thiede, Bernd; De Souza, Gustavo Antonio & Wiker, Harald G (2012). Proteomic analysis of a multi-resistant clinical Escherichia coli isolate of unknown genomic background. Journal of Proteomics.  ISSN 1874-3919.  75(6), s 1830- 1837 . doi: 10.1016/j.jprot.2011.12.024
  • Arntzen, Magnus & Thiede, Bernd (2012). ApoptoProteomics, an Integrated Database for Analysis of Proteomics Data Obtained from Apoptotic Cells. Molecular & Cellular Proteomics.  ISSN 1535-9476.  11(2) . doi: 10.1074/mcp.M111.010447
  • Bull, Vibeke Hervik; Rajalingam, Krishnaraj & Thiede, Bernd (2012). Sorafenib-Induced Mitochondrial Complex I Inactivation and Cell Death in Human Neuroblastoma Cells. Journal of Proteome Research.  ISSN 1535-3893.  11(3), s 1609- 1620 . doi: 10.1021/pr200790e
  • Bull, Vibeke Hervik & Thiede, Bernd (2012). Proteome analysis of tunicamycin-induced ER stress. Electrophoresis.  ISSN 0173-0835.  33(12), s 1814- 1823 . doi: 10.1002/elps.201100565
  • Imre, Gergely; Heering, Jan; Takeda, Armelle-Natsuo; Husmann, Matthias; Thiede, Bernd; Heringdorf, Dagmar Meyer zu; Green, Douglas R; van der Goot, F Gisou; Sinha, Bhanu; Dötsch, Volker & Rajalingam, Krishnaraj (2012). Caspase-2 is an initiator caspase responsible for pore-forming toxin-mediated apoptosis. EMBO Journal.  ISSN 0261-4189.  31(11), s 2615- 2628 . doi: 10.1038/emboj.2012.93
  • Khan, R; Rukke, HV; Ricomini, AP; Fimland, G; Arntzen, Magnus; Thiede, Bernd & Petersen, Fernanda Cristina (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology.  ISSN 0021-9193.  194(15), s 3781- 3788 . doi: 10.1128/JB.00624-12
  • Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). A Rapid Approach for Isobaric Peptide Termini Labeling. Methods in molecular biology.  ISSN 1064-3745.  893, s 129- 141 . doi: 10.1007/978-1-61779-885-6_10
  • Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Analytical and Bioanalytical Chemistry.  ISSN 1618-2642.  404(4), s 1103- 1114 . doi: 10.1007/s00216-012-5949-z
  • Ott, Christine; Ross, Katharina; Straub, Sebastian; Thiede, Bernd; Götz, Monika; Goosmann, Christian; Krischke, Markus; Mueller, Martin J.; Krohne, Georg; Rudel, Thomas & Kozjak-Pavlovic, Vera (2012). Sam50 Functions in Mitochondrial Intermembrane Space Bridging and Biogenesis of Respiratory Complexes. Molecular and Cellular Biology.  ISSN 0270-7306.  32(6), s 1173- 1188 . doi: 10.1128/MCB.06388-11
  • Patron, Juan P.; Fendler, Annika; Bild, Matthias; Jung, Ulrike; Müller, Henrik; Arntzen, Magnus; Piso, Chloe; Stephan, Carsten; Thiede, Bernd; Mollenkopf, Hans-Joachim; Jung, Klaus; Kaufmann, Stefan H.E. & Schreiber, Jörg (2012). MiR-133b Targets Antiapoptotic Genes and Enhances Death Receptor-Induced Apoptosis. PLOS ONE.  ISSN 1932-6203.  7(4) . doi: 10.1371/journal.pone.0035345
  • Tomazella, Gisele Guicardi; Kassahun, Henok; Nilsen, Hilde & Thiede, Bernd (2012). Quantitative Proteome Analysis Reveals RNA Processing Factors As Modulators of Ionizing Radiation-Induced Apoptosis in the C. elegans Germline. Journal of Proteome Research.  ISSN 1535-3893.  11(8), s 4277- 4288 . doi: 10.1021/pr300386z
  • Arntzen, Magnus; Koehler, Christian; Barsnes, Harald; Berven, Frode; Treumann, Achim & Thiede, Bernd (2011). IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT. Journal of Proteome Research.  ISSN 1535-3893.  10(2), s 913- 920 . doi: 10.1021/pr1009977
  • Arntzen, Magnus; Koehler, Christian; Treumann, Achim & Thiede, Bernd (2011). Quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Methods in molecular biology.  ISSN 1064-3745.  753, s 65- 76 . doi: 10.1007/978-1-61779-148-2_5
  • Arntzen, Magnus & Thiede, Bernd (2011). ApoptoProteomics: An integrated database for analysis of proteomics data obtained from apoptotic cells. Molecular & Cellular Proteomics.  ISSN 1535-9476.  10(12) . doi: 10.1074/mcp.M111.010447
  • De Souza, Gustavo; Arntzen, Magnus Øverlie; Fortuin, Suereta; Schürch, Anita; Målen, Hiwa; McEvoy, Christopher R; Van Soolingen, Dick; Thiede, Bernd; Warren, Robin M & Wiker, Harald G (2011). Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database. Molecular & Cellular Proteomics.  ISSN 1535-9476.  10(1) . doi: 10.1074/mcp.M110.002527 Fulltekst i vitenarkiv.
  • Koehler, Christian; Arntzen, Magnus; Strozynski, Margarita Anna; Treumann, Achim & Thiede, Bernd (2011). Isobaric Peptide Termini Labeling Utilizing Site-Specific N-Terminal Succinylation. Analytical Chemistry.  ISSN 0003-2700.  83(12), s 4775- 4781 . doi: 10.1021/ac200229w
  • Kolberg, Jan Isak; Ihle, Øistein; Thiede, Bernd & Aase, Audun (2011). Polyreactivity of Monoclonal Antibodies Made Against Human Erythrocyte Membranes with Various Pathogenic Bacteria. Hybridoma.  ISSN 0272-457X.  30(1), s 1- 9 . doi: 10.1089/hyb.2010.0062
  • Korvald, Hanne; Moe, Anne Margrethe Mølstad; Cederkvist, Fritjof Henning; Thiede, Bernd; Lærdahl, Jon Kristen; Bjørås, Magnar & Alseth, Ingrun (2011). Schizosaccharomyces pombe Ofd2 Is a Nuclear 2-Oxoglutarate and Iron Dependent Dioxygenase Interacting with Histones. PLOS ONE.  ISSN 1932-6203.  6(9) . doi: 10.1371/journal.pone.0025188

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  • Berg, Henriette Engen; Halldórsson, Skarphéðinn; Thiede, Bernd; Vik-Mo, Einar O.; Lundanes, Elsa & Wilson, Steven Ray Haakon (2020). Micro pillar array columns for comprehensive proteomics. Vis sammendrag
  • Hanson, Ingunn; Altanerova, Ursula; Thiede, Bernd & Edin, Nina Frederike J (2020). Radioprotector TGF-β3 is secreted in exosomes and activated by LDR priming. Vis sammendrag
  • Berg, Henriette Engen; Skottvoll, Frøydis Sved; Bjørseth, Kamilla; Sæterdal, Kristina Erikstad; Brandtzaeg, Ole Kristian; Vehus, Tore; Hustoft, Hanne Kolsrud; Røberg-Larsen, Hanne; Thiede, Bernd; Lundanes, Elsa & Wilson, Steven Ray Haakon (2018). Development of nanoLC column technology for proteomic studies. Vis sammendrag
  • Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug & Thiede, Bernd (2018). Author Correction: Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports.  ISSN 2045-2322.  8 . doi: 10.1038/s41598-018-28147-w
  • Eriksen, Gunnar Sundstøl; Thiede, Bernd & Solhaug, Anita (2018). Effects of an emerging Fusarium mycotoxin on hepatocytes.
  • Khan, Ayyad Ahmad Zartasht; Jackson, Catherine; Reppe, Sjur; Utheim, Tor Paaske; Olstad, Ole Kristoffer; Thiede, Bernd & Eidet, Jon Roger (2018). Sericin-Induced Melanogenesis in Cultured Retinal Pigment Epithelium is Associated with Elevated Levels of Hydrogen Peroxide.
  • López-Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas M. (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint.. Cell Cycle.  ISSN 1538-4101.  16(10), s 947- 956 . doi: 10.1080/15384101.2017.1310350.
  • Sved Skottvoll, Frøydis; Lund, Kaja; Røberg-Larsen, Hanne; Berg, Henriette Sjånes; Thiede, Bernd; Lundanes, Elsa & Wilson, Steven Ray Haakon (2017). Diagnostic potential of exosomes: The purification issue.
  • Jensen, Janicke Liaaen; Utheim, Øygunn Aass; Chen, Xiangjun; Thiede, Bernd; Aqrawi, Lara Adnan; Rusthen, Shermin; Young, Alix; Utheim, Tor Paaske & Galtung, Hilde (2016). Searching for Disease Biomarkers for Primary Sjögren’s Syndrome Based on Oral and Ocular Patient Examinations.
  • Jungblut, Peter R.; Thiede, Bernd & Schluter, H (2016). Towards deciphering proteomes via the proteoform, protein speciation, moonlighting and protein code concepts. Journal of Proteomics.  ISSN 1874-3919.  134, s 1- 4 . doi: 10.1016/j.jprot.2016.01.012
  • Lopez Soop, Graciela; Reiner, Andrew Henry; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas Michel (2015). Regulation of Normal Mitotic Progression by A-kinase Anchoring Protein 95 (AKAP95).
  • Bousquet, Paula; Abshiru, Nebiyu; Sandvik, Joe Alexander; Pettersen, Erik O; Thiede, Bernd; Woods, Robert; Moreno, Ernesto & Krengel, Ute (2014). Anti-tumor antibodies and hypoxia.
  • Perdreau, Harmonie; Guldsten, Hanne; Progida, Cinzia; Thiede, Bernd; Bakke, Oddmund & Morth, Jens Preben (2014). Molecular and Structural Characterization of Sjögren syndrome/scleroderma autoantigen 1 (SSSCA1)..
  • Perdreau, Harmonie; Barfeld, Stefan; Guldsten, Hanne; Thiede, Bernd; Mills, Ian Geoffrey & Morth, Jens Preben (2013). Molecular and Structural Characterization of Sjögren syndrome/scleroderma autoantigen 1, a new binding partner of Tankyrase regulated by the oncogene c-Myc.
  • Arntzen, Magnus & Thiede, Bernd (2013). Cell Death Proteomics.
  • Bousquet, Paula; Abshiru, Nebiyu; Johansen, Rune Forstrøm; Bjørås, Magnar; Sandvik, Joe Alexander; Pettersen, Erik O; Thiede, Bernd; Woods, Robert; Moreno, Ernesto & Krengel, Ute (2013). A structural and functional study of anti-ganglioside antibodies. International Journal of Molecular Medicine.  ISSN 1107-3756.  32, s S42- S42 Vis sammendrag
  • Köhler, Christian Jeffrey; Thiede, Bernd; Lundanes, Elsa & Greibrokk, Tyge (2013). Isobaric peptide termini labeling (IPTL) - An alternative approach for quantitative proteomics.
  • Khan, Rabia; Rukke, Håkon Valen; Filho, Antonio Pedro Ricomini; Fimland, Gunnar; Arntzen, Magnus; Thiede, Bernd & Petersen, Fernanda Cristina (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology.  ISSN 0021-9193.  194(15), s 3781- 3788 . doi: 10.1128/​JB.00624-12 Fulltekst i vitenarkiv.
  • Arntzen, Magnus & Thiede, Bernd (2012). ApoptoProteomics: An integrated database for analysis of proteomics data obtained from apoptotic cells.
  • Arntzen, Magnus & Thiede, Bernd (2012). Apoptoproteomics.
  • Bousquet, Paula; Thiede, Bernd; Moreno, Ernesto & Krengel, Ute (2012). Antitumor antibodies - Crystallization and MS analysis.
  • Demko, Viktor; Ako, Ako Eugene; Perroud, Pierre-Francois; Liang, Zhe; Johansen, Wenche; Wilson, Robert; Shalchian-Tabrizi, Kamran; Thiede, Bernd; Quatrano, Ralph & Olsen, Odd-Arne (2012). Searching for cellular targets of the plant calpain DEK1.
  • Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, A; Stein, Robert; Zimny-Amdt, Ursula; Schmid, Monika & Jungblut, Peter R. (2012). Protein species high resolution quantitative proteomics of HeLa cells using SILAC-2-DE-nanoLC/LTQ-Orbitrap mass spectrometry. Molecular & Cellular Proteomics.  ISSN 1535-9476. . doi: 10.1074/mcp.M112.019372
  • Arntzen, Magnus; Koehler, Christian; Barsnes, Harald; Berven, Frode; Treumann, Achim & Thiede, Bernd (2011). IsobariQ: Software for isobaric quantitative proteomics using IPTL, iTRAQ and TMT.
  • Bousquet, Paula; Thiede, Bernd; Moreno, Ernesto & Krengel, Ute (2011). Antitumor antibodies – Crystallization and MS analysis.

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Publisert 12. nov. 2015 15:22 - Sist endret 24. nov. 2020 08:26

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