Bernd Thiede

Bilde av Bernd Thiede
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Telefon +47 22840533
Rom 2303A
Besøksadresse Blindernveien 31 0371 Oslo
Postadresse Postboks 1066 Blindern 0316 Oslo

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Massespektrometri, proteomikk













Emneord: Proteomikk, Massespektrometri, Biokjemi, Molekylærbiologi


1. Koehler, C.J., Arntzen, M.Ø., de Souza, G.A., Thiede, B. (2013) An approach for triplex-isobaric peptide termini labeling (Triplex-IPTL). Anal. Chem., 85, 2478-2485.

2. Thiede, B., Koehler, C.J., Strozynski, M., Treumann, A., Stein, R., Zimny-Arndt, U., Schmid, M., Jungblut, P.R. (2013) High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture (SILAC), two-dimensional gel electrophoresis (2DE) and nano-liquid chromatography coupled to an LTQ-Orbitrap mass spectrometer. Mol. Cell. Proteomics, 12, 529-538.

3. Arntzen, M.A., Boddie, P., Frick, R., Koehler, C.J., Thiede, B. (2015) Consolidation of proteomics data in the Cancer proteomics database. Proteomics, 15, 3765-3771.

4. Trung, T.T., Strozynski, M.A., Thiede, B. (2017) Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells, Proteomics, 17, 1600470.

5. Trung, T.T., Bollineni, R.C., Strozynski, M.A., Koehler, C.J., Thiede, B. (2017) Identification of alternative splice variants using unique tryptic peptide sequences for database searches, J. Proteome Res., 16, 2571-2578.

6. Bollineni, R.C., Koehler, C.J., Gislefoss, R.E., Anonsen, J.H., Thiede, B. (2018) Large-scale intact glycopeptide identification by Mascot database search. Sci. Rep. 8, 2117.

  • Reubsaet, Leon; Thiede, Bernd & Halvorsen, Trine Grønhaug (2022). Next generation VAMS®–Trypsin immobilization for instant proteolysis in bottom-up protein determination. . Advances in Sample Preparation. ISSN 2772-5820. 3. doi: 10.1016/j.sampre.2022.100027.
  • Nguyen, Minh Thao; Grønhaug Halvorsen, Trine; Thiede, Bernd & Reubsaet, Leon (2022). Smart proteolysis samplers for pre-lab bottom-up protein analysis – Performance of on-paper digestion compared to conventional digestion. Separation Science Plus. ISSN 2573-1815. 5(5), s. 171–183. doi: 10.1002/sscp.202100062.
  • Hynne, Håvard; Aqrawi, Lara A.; Jensen, Janicke Liaaen; Thiede, Bernd; Palm, Øyvind & Amdal, Cecilie Delphin [Vis alle 10 forfattere av denne artikkelen] (2022). Proteomic Profiling of Saliva and Tears in Radiated Head and Neck Cancer Patients as Compared to Primary Sjögren’s Syndrome Patients. International Journal of Molecular Sciences. ISSN 1661-6596. 23(7). doi: 10.3390/ijms23073714.
  • Kallas, Pawel; Valen, Håkon; Hulander, Mats; Gadegaard, Nikolaj; Stormonth-Darling, John & O'Reilly, Padraic [Vis alle 9 forfattere av denne artikkelen] (2022). Protein-coated nanostructured surfaces affect the adhesion of Escherichia coli. Nanoscale. ISSN 2040-3364. 14(20), s. 7736–7746. doi: 10.1039/d2nr00976e. Fulltekst i vitenarkiv
  • Thiede, Bernd & Koehler, Christian (2021). An Approach for Triplex-IPTL. I Marcus, Katrin; Eisenacher, Martin & Sitek, Barbara (Red.), Quantitative Methods in Proteomics. Humana Press. ISSN 978-1-0716-1023-7. s. 133–144. doi: 10.1007/978-1-0716-1024-4_10. Fulltekst i vitenarkiv
  • Andersen, Elisabeth; Dugarte, Maria Eugenia Chollet; Sletten, Marit; Stavik, Benedicte; Skarpen, Ellen & Backe, Paul Hoff [Vis alle 9 forfattere av denne artikkelen] (2021). Molecular Characterization of Two Homozygous Factor VII Variants Associated with Intracranial Bleeding. Thrombosis and Haemostasis. ISSN 0340-6245. 121(12), s. 1588–1598. doi: 10.1055/a-1450-8568.
  • Johannsen, Christina; Koehler, Christian & Thiede, Bernd (2021). Comparison of LFQ and IPTL for Protein Identification and Relative Quantification. Molecules. ISSN 1420-3049. 26(17). doi: 10.3390/molecules26175330. Fulltekst i vitenarkiv
  • Malecki, Jedrzej Mieczyslaw; O'Donohue, Marie-Francoise; Kim, Yeji; Jakobsson, Magnus; Gessa, Luca & Pinto, Rita [Vis alle 14 forfattere av denne artikkelen] (2021). Human METTL18 is a histidine-specific methyltransferase that targets RPL3 and affects ribosome biogenesis and function. Nucleic Acids Research (NAR). ISSN 0305-1048. 49(6), s. 3185–3203. doi: 10.1093/nar/gkab088. Fulltekst i vitenarkiv
  • Krishnan, Aswini; Berthelet, Jean; Renaud, Emilie; Rosigkeit, Sebastian; Distler, Ute & Stawiski, Eric [Vis alle 17 forfattere av denne artikkelen] (2020). Proteogenomics analysis unveils a TFG-RET gene fusion and druggable targets in papillary thyroid carcinomas. Nature Communications. ISSN 2041-1723. 11. doi: 10.1038/s41467-020-15955-w. Fulltekst i vitenarkiv
  • Kara, Emrah; Nielsen, Nis Valentin; Eggertsdottir, Bergrun; Thiede, Bernd; Kanse, Sandip & Løset, Geir Åge (2020). Design and characterization of a new pVII combinatorial phage display peptide library for protease substrate mining using Factor VII activating protease (FSAP) as model. ChemBioChem. ISSN 1439-4227. 21(13), s. 1875–1884. doi: 10.1002/cbic.201900705. Fulltekst i vitenarkiv
  • Guldvik, Ingrid Jenny; Zuber, Verena; Braadland, Peder Rustøen; Grytli, Helene Hartvedt; Ramberg, Håkon Andre & Lilleby, Wolfgang [Vis alle 18 forfattere av denne artikkelen] (2020). Identification and Validation of Leucine-rich alpha-2-glycoprotein 1 as a Noninvasive Biomarker for Improved Precision in Prostate Cancer Risk Stratification. European Urology Open Science. ISSN 2666-1691. 21, s. 51–61. doi: 10.1016/j.euros.2020.08.007. Fulltekst i vitenarkiv
  • Perdreau-Dahl, Harmonie; Progida, Cinzia; Barfeld, Stefan Jörg; Guldsten, Hanne; Thiede, Bernd & Arntzen, Magnus Øverlie [Vis alle 10 forfattere av denne artikkelen] (2020). Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells. Communications Biology. ISSN 2399-3642. 3(1). doi: 10.1038/s42003-020-0851-2.
  • Khan, Ayyad Ahmad Zartasht; Jackson, Catherine; Utheim, Tor Paaske; Reppe, Sjur; Sapkota, Dipak & Olstad, Ole Kristoffer [Vis alle 8 forfattere av denne artikkelen] (2020). Sericin-induced melanogenesis in cultured retinal pigment epithelial cells is associated with elevated levels of hydrogen peroxide and inflammatory proteins. Molecules. ISSN 1420-3049. 25(19), s. 1–20. doi: 10.3390/molecules25194395. Fulltekst i vitenarkiv
  • Mazagão Guerreiro, Eduarda; Øvstebø, Reidun; Thiede, Bernd; Costea, Daniela Elena; Søland, Tine Merete & Galtung, Hilde (2020). Cancer cell line-specific protein profiles in extracellular vesicles identified by proteomics. PLOS ONE. ISSN 1932-6203. 15(9), s. 1–20. doi: 10.1371/journal.pone.0238591. Fulltekst i vitenarkiv
  • Solhaug, Anita; Torgersen, Maria Lyngaas; Holme, Jørn Andreas; Wiik-Nielsen, Jannicke; Thiede, Bernd & Eriksen, Gunnar Sundstøl (2020). The Fusarium mycotoxin, 2-Amino-14,16-dimethyloctadecan-3-ol (AOD) induces vacuolization in HepG2 cells. Toxicology. ISSN 0300-483X. s. 433–434. doi: 10.1016/j.tox.2020.152405. Fulltekst i vitenarkiv
  • Riegel, Kristina; Schlöder, Janine; Sobczak, Marco; Jonuleit, Helmut; Thiede, Bernd & Schild, Hansjörg [Vis alle 7 forfattere av denne artikkelen] (2019). RAF kinases are stabilized and required for dendritic cell differentiation and function. Cell Death and Differentiation. ISSN 1350-9047. 27, s. 1300–1315. doi: 10.1038/s41418-019-0416-4. Fulltekst i vitenarkiv
  • Wagner, Fabienne; Kunz, Tobias C.; Chowdhury, Suvagata R.; Thiede, Bernd; Fraunholz, Martin & Eger, Debora [Vis alle 7 forfattere av denne artikkelen] (2019). Armadillo repeat-containing protein 1 is a dual localization protein associated with mitochondrial intermembrane space bridging complex. PLOS ONE. ISSN 1932-6203. 14(10), s. 1–19. doi: 10.1371/journal.pone.0218303. Fulltekst i vitenarkiv
  • Byskov, Kristina; M. le Gall, Sylvain; Thiede, Bernd; Camerer, Eric & Kanse, Sandip (2019). Protease activated receptors (PAR)‐1 and ‐2 mediate cellular effects of factor VII activating protease (FSAP). The FASEB Journal. ISSN 0892-6638. 34, s. 1079–1090. doi: 10.1096/fj.201801986RR. Fulltekst i vitenarkiv
  • Koehler, Christian & Thiede, Bernd (2019). Predominant cleavage of proteins N-terminal to serines and threonines using scandium(III) triflate. JBIC Journal of Biological Inorganic Chemistry. ISSN 0949-8257. 25, s. 61–66. doi: 10.1007/s00775-019-01733-7. Fulltekst i vitenarkiv
  • Aqrawi, Lara Adnan; Galtung, Hilde; Guerreiro, Eduarda; Øvstebø, Reidun; Thiede, Bernd & Utheim, Tor Paaske [Vis alle 11 forfattere av denne artikkelen] (2019). Proteomic and histopathological characterisation of sicca subjects and primary Sjögren’s syndrome patients reveals promising tear, saliva and extracellular vesicle disease biomarkers. Arthritis Research & Therapy. ISSN 1478-6354. 21, s. 1–14. doi: 10.1186/s13075-019-1961-4. Fulltekst i vitenarkiv
  • Itkonen, Harri; Urbanucci, Alfonso; Sara ES, Martin; Khan, Aziz; Mathelier, Anthony & Thiede, Bernd [Vis alle 8 forfattere av denne artikkelen] (2019). High OGT activity is essential for MYC-driven proliferation of prostate cancer cells. Theranostics. ISSN 1838-7640. 9(8), s. 2183–2197. doi: 10.7150/thno.30834. Fulltekst i vitenarkiv
  • Abudu, Yakubu Princely; Pankiv, Serhiy; Mathai, Benan John; Lystad, Alf Håkon; Bindesbøll, Christian & Brenne, Hanne Britt [Vis alle 14 forfattere av denne artikkelen] (2019). NIPSNAP1 and NIPSNAP2 act as “eat-me signal” for mitophagy. Developmental Cell. ISSN 1534-5807. 49(4), s. 509–525.e12. doi: 10.1016/j.devcel.2019.03.013. Fulltekst i vitenarkiv
  • Buehler, Ulrike; Schulenburg, Katharina; Yurugi, Hajime; Solman, Maja; Abankwa, Daniel & Ulges, Alexander [Vis alle 11 forfattere av denne artikkelen] (2018). Targeting prohibitins at the cell surface prevents Th17-mediated autoimmunity. EMBO Journal. ISSN 0261-4189. 37:e99429(16), s. 1–14. doi: 10.15252/embj.201899429.
  • Skottvoll, Frøydis Sved; Berg, Henriette Engen; Bjørseth, Kamilla; Lund, Kaja; Roos, Norbert & Bekhradnia, Sara [Vis alle 13 forfattere av denne artikkelen] (2018). Ultracentrifugation versus kit exosome isolation: nanoLC-MS and other tools reveal similar performance biomarkers, but also contaminations. Future science OA. ISSN 2056-5623. 5(1). doi: 10.4155/fsoa-2018-0088. Fulltekst i vitenarkiv
  • Tran, Trung; Bollineni, Ravi Chand; Koehler, Christian & Thiede, Bernd (2018). Absolute two-point quantification of proteins using dimethylated proteotypic peptides. The Analyst. ISSN 0003-2654. 143(18), s. 4359–4365. doi: 10.1039/c8an01081a.
  • Aqrawi, Lara Adnan; Chen, Xiangjun; Jensen, Janicke Liaaen; Morthen, Mathias Kaurstad; Thiede, Bernd & Utheim, Øygunn Aass [Vis alle 10 forfattere av denne artikkelen] (2018). Severity of clinical dry eye manifestations influences protein expression in tear fluid of patients with primary Sjögren's syndrome. PLOS ONE. ISSN 1932-6203. 13:e0205762(10), s. 1–14. doi: 10.1371/journal.pone.0205762. Fulltekst i vitenarkiv
  • Dukic, Aleksandra; Gerbaud, Pascal; Guibourdenche, Jean; Thiede, Bernd; Tasken, Kjetil & Pidoux, Guillaume (2018). Ezrin-anchored PKA phosphorylates serine 369 and 373 on connexin 43 to enhance gap junction assembly, communication, and cell fusion. Biochemical Journal. ISSN 0264-6021. 475(2), s. 455–476. doi: 10.1042/BCJ20170529. Fulltekst i vitenarkiv
  • Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug & Thiede, Bernd (2018). Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports. ISSN 2045-2322. 8. doi: 10.1038/s41598-018-20331-2. Fulltekst i vitenarkiv
  • Pasovic, Lara; Utheim, Tor Paaske; Reppe, Sjur; Khan, Ayyad Ahmad Zartasht; Jackson, Catherine & Thiede, Bernd [Vis alle 9 forfattere av denne artikkelen] (2018). Improvement of storage medium for cultured human retinal pigment epithelial cells using factorial design. Scientific Reports. ISSN 2045-2322. 8(1). doi: 10.1038/s41598-018-24121-8. Fulltekst i vitenarkiv
  • Dugarte, Maria Eugenia Chollet; Andersen, Elisabeth; Skarpen, Ellen; Myklebust, Christiane Filion; Koehler, Christian & Morth, Jens Preben [Vis alle 12 forfattere av denne artikkelen] (2018). Factor VII deficiency: Unveiling the cellular and molecular mechanisms underlying Three model alterations of the enzyme catalytic domain. Biochimica et Biophysica Acta - Molecular Basis of Disease. ISSN 0925-4439. 1864(3), s. 660–667. doi: 10.1016/j.bbadis.2017.12.016.
  • Imre, Gergely; Berthelet, Jean; Heering, Jan; Kehrloesser, Sebastian; Melzer, Inga Maria & Lee, Byung Il [Vis alle 9 forfattere av denne artikkelen] (2017). Apoptosis inhibitor 5 is an endogenous inhibitor of caspase-2. EMBO Reports. ISSN 1469-221X. 18(5), s. 733–744. doi: 10.15252/embr.201643744. Fulltekst i vitenarkiv
  • Tran, Trung; Bollineni, Ravi Chand; Strozynski, Margarita Anna; Koehler, Christian & Thiede, Bernd (2017). Identification of Alternative Splice Variants Using Unique Tryptic Peptide Sequences for Database Searches. Journal of Proteome Research. ISSN 1535-3893. 16(7), s. 2571–2578. doi: 10.1021/acs.jproteome.7b00126.
  • Tran, Trung; Strozynski, Margarita Anna & Thiede, Bernd (2017). Quantitative phosphoproteome analysis of cisplatin-induced apoptosis in Jurkat T cells. Proteomics. ISSN 1615-9853. 17(11). doi: 10.1002/pmic.201600470.
  • Barfeld, Stefan Jörg; Urbanucci, Alfonso; Itkonen, Harri; Fazli, Ladan; Hicks, Jessica L & Thiede, Bernd [Vis alle 10 forfattere av denne artikkelen] (2017). c-Myc antagonises the transcriptional activity of the androgen receptor in prostate cancer affecting key gene networks. EBioMedicine. ISSN 2352-3964. 18, s. 83–93. doi: 10.1016/j.ebiom.2017.04.006. Fulltekst i vitenarkiv
  • Stakkestad, Øystein; Lyngstadaas, Ståle Petter; Thiede, Bernd; Vondrasesek, Jiri; Skålhegg, Bjørn Steen & Reseland, Janne Elin (2017). Phosphorylation Modulates Ameloblastin Self-assembly and Ca2+ Binding. Frontiers in Physiology. ISSN 1664-042X. 8. doi: 10.3389/fphys.2017.00531. Fulltekst i vitenarkiv
  • Aqrawi, Lara Adnan; Galtung, Hilde; Vestad, Beate; Øvstebø, Reidun; Thiede, Bernd & Rusthen, Shermin [Vis alle 13 forfattere av denne artikkelen] (2017). Identification of potential saliva and tear biomarkers in primary Sjögren’s syndrome, utilising the extraction of extracellular vesicles and proteomics analysis. Arthritis Research & Therapy. ISSN 1478-6354. 19(1). doi: 10.1186/s13075-017-1228-x. Fulltekst i vitenarkiv
  • Koehler, Christian; Bollineni, Ravi Chand & Thiede, Bernd (2017). Application of the half decimal place rule to increase the peptide identification rate. Rapid Communications in Mass Spectrometry. ISSN 0951-4198. 31(2), s. 227–233. doi: 10.1002/rcm.7780. Fulltekst i vitenarkiv
  • Haatveit, Hanne Merethe; Wessel, Øystein; Markussen, Turhan; Lund, Morten; Thiede, Bernd & Nyman, Ingvild Berg [Vis alle 9 forfattere av denne artikkelen] (2017). Viral protein kinetics of piscine orthoreovirus infection in atlantic salmon blood cells. Viruses. ISSN 1999-4915. 9:49(3), s. 1–18. doi: 10.3390/v9030049. Fulltekst i vitenarkiv
  • Grundt, Kirsten; Thiede, Bernd & Østvold, Anne Carine (2017). Identification of kinases phosphorylating 13 sites in the nuclear, DNA-binding protein NUCKS. Biochimica et Biophysica Acta - Proteins and Proteomics. ISSN 1570-9639. 1865(3), s. 359–369. doi: 10.1016/j.bbapap.2016.12.009.
  • Lopez Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil & Thiede, Bernd [Vis alle 8 forfattere av denne artikkelen] (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle. ISSN 1538-4101. 16(10), s. 947–956. doi: 10.1080/15384101.2017.1310350. Fulltekst i vitenarkiv
  • Fiorito, Elisa; Sharma, Yogita; Gilfillan, Siv; Wang, Shixiong; Singh, Sachin Kumar & Somisetty, Venkata Satheesh [Vis alle 11 forfattere av denne artikkelen] (2016). CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions. Nucleic Acids Research (NAR). ISSN 0305-1048. 44, s. 10588–10602. doi: 10.1093/nar/gkw785.
  • Gerner, Lisa; Munack, Steffi; Temmerman, Koen; Lawrence-Dörner, Ann-Marie; Besir, Huseyin & Wilmanns, Matthias [Vis alle 10 forfattere av denne artikkelen] (2016). Data for the co-expression and purification of human recombinant CaMKK2 in complex with calmodulin in Escherichia coli. Data in Brief. ISSN 2352-3409. 8, s. 733–740. doi: 10.1016/j.dib.2016.06.033.
  • Olsen, Christel Moræus; Markussen, Turhan; Thiede, Bernd & Rimstad, Espen (2016). Infectious Salmon Anaemia Virus (ISAV) RNA Binding Protein Encoded by Segment 8 ORF2 and Its Interaction with ISAV and Intracellular Proteins. Viruses. ISSN 1999-4915. 8(2). doi: 10.3390/v8020052. Fulltekst i vitenarkiv
  • Gerner, Lisa; Munack, Steffi; Temmerman, Koen; Lawrence-Dörner, Ann-Marie; Besir, Huseyin & Wilmanns, Matthias [Vis alle 9 forfattere av denne artikkelen] (2016). Using the fluorescent properties of STO-609 as a tool to assist structure-function analyses of recombinant CaMKK2. Biochemical and Biophysical Research Communications - BBRC. ISSN 0006-291X. 476(2), s. 102–107. doi: 10.1016/j.bbrc.2016.05.045.
  • Bousquet, Paula; Sandvik, Joe Alexander; Arntzen, Magnus Øverlie; Edin, Nina Frederike J; Christoffersen, Stine & Krengel, Ute [Vis alle 8 forfattere av denne artikkelen] (2015). Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells. International Journal of Proteomics. ISSN 2090-2174. doi: 10.1155/2015/678527.
  • Bollineni, Ravi Chand; Guldvik, Ingrid Jenny; Grönberg, Henrik; Wiklund, Fredrik; Mills, Ian Geoffrey & Thiede, Bernd (2015). A differential protein solubility approach for the depletion of highly abundant proteins in plasma using ammonium sulfate. The Analyst. ISSN 0003-2654. 140(24), s. 8109–8117. doi: 10.1039/c5an01560j.
  • Chymkowitch, Pierre; Nguéa P, Aurélie; Aanes, Håvard; Koehler, Christian; Thiede, Bernd & Lorenz, Susanne [Vis alle 9 forfattere av denne artikkelen] (2015). Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes. Genome Research. ISSN 1088-9051. 25(6), s. 897–906. doi: 10.1101/gr.185793.114.
  • Øverbye, Anders; Skotland, Tore; Koehler, Christian; Thiede, Bernd; Seierstad, Therese & Berge, Viktor [Vis alle 8 forfattere av denne artikkelen] (2015). Identification of prostate cancer biomarkers in urinary exosomes. OncoTarget. ISSN 1949-2553. 6(30), s. 30357–30376. doi: 10.18632/oncotarget.4851.
  • Arntzen, Magnus Øverlie; Boddie, Paul; Frick, Rahel; Koehler, Christian & Thiede, Bernd (2015). Consolidation of proteomics data in the Cancer proteomics database. Proteomics. ISSN 1615-9853. 15(22), s. 3765–3771. doi: 10.1002/pmic.201500144.
  • Serguienko, Anastassia; Grad, Iwona; Wennerstrøm, Anna; Meza, Leonardo Zepeda; Thiede, Bernd & Stratford, Eva Wessel [Vis alle 8 forfattere av denne artikkelen] (2015). Metabolic reprogramming of metastatic breast cancer and melanoma by Let-7a microRNA. OncoTarget. ISSN 1949-2553. 6(4), s. 2451–2465. doi: 10.18632/oncotarget.3235.
  • Albrecht, Elke; Norheim, Frode; Thiede, Bernd; Holen, Torgeir; Ohashi, Tomoo & Schering, Lisa [Vis alle 12 forfattere av denne artikkelen] (2015). Irisin - A myth rather than an exercise-inducible myokine. Scientific Reports. ISSN 2045-2322. 5. doi: 10.1038/srep08889.
  • Koehler, Christian; Arntzen, Magnus Øverlie & Thiede, Bernd (2015). The impact of carbon-13 and deuterium on relative quantification of proteins using stable isotope diethyl labeling. Rapid Communications in Mass Spectrometry. ISSN 0951-4198. 29(9), s. 830–836. doi: 10.1002/rcm.7170.
  • Villa, Oscar ; Brookes, Steven J; Thiede, Bernd; Heijl, Lars; Lyngstadaas, Ståle Petter & Reseland, Janne Elin (2015). Subfractions of enamel matrix derivative differentially influence cytokine secretion from human oral fibroblasts. Journal of Tissue Engineering. ISSN 2041-7314. 6, s. 1–11. doi: 10.1177/2041731415575857. Fulltekst i vitenarkiv
  • Albrecht, Elke; norheim, frode; Thiede, Bernd; Lee, Sindre; Holen, Torgeir & Ohashi,, Tomoo [Vis alle 12 forfattere av denne artikkelen] (2015). Irisin – a myth rather than an exercise-inducible myokine. Scientific Reports. ISSN 2045-2322. doi: 10.1038/srep08889.
  • Glowinski, Frithjof; Holland, Carsten; Thiede, Bernd; Jungblut, Peter R. & Meyer, Thomas (2014). Analysis of T4SS-induced signaling by H. pylori using quantitative phosphoproteomics. Frontiers in Microbiology. ISSN 1664-302X. 5(JULY). doi: 10.3389/fmicb.2014.00356.
  • Haaland, Ingvild; Opsahl, Jill Anette; Berven, Frode; Reikvam, Håkon; Fredly, Hanne Kristin & Haugse, Ragnhild [Vis alle 11 forfattere av denne artikkelen] (2014). Molecular mechanisms of nutlin-3 involve acetylation of p53, histones and heat shock proteins in acute myeloid leukemia. Molecular Cancer. ISSN 1476-4598. 13(1:116). doi: 10.1186/1476-4598-13-116. Fulltekst i vitenarkiv
  • Frank, Matthias Johannes; Walter, Martin Sebastian; Rubert, Marina; Thiede, Bernd; Monjo Cabrer, Marta & Reseland, Janne Elin [Vis alle 8 forfattere av denne artikkelen] (2014). Cathodic polarization coats titanium based implant materials with enamel matrix derivate (EMD). Materials. ISSN 1996-1944. 7(3), s. 2210–2228. doi: 10.3390/ma7032210. Fulltekst i vitenarkiv
  • Pavlovic-Kozjak, Vera; Prell, F; Thiede, Bernd; Gotz, M; Wosiek, D & Ott, C [Vis alle 7 forfattere av denne artikkelen] (2014). C1orf163/RESA1 is a novel mitochondrial intermembrane space protein connected to respiratory chain assembly. Journal of Molecular Biology (JMB). ISSN 0022-2836. 426(4), s. 908–920. doi: 10.1016/j.jmb.2013.12.001.
  • Oldenburg Ruppelt, Anja; Delbarre, Erwan; Thiede, Bernd; Vigouroux, Corinne & Collas, Philippe (2014). Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes. Human Molecular Genetics. ISSN 0964-6906. 23(5), s. 1151–1162. doi: 10.1093/hmg/ddt509.
  • Callaway, A.; Kostrzewa, M.; Willershausen, B.; Schmidt, F.; Thiede, Bernd & Küpper, H. [Vis alle 7 forfattere av denne artikkelen] (2013). Identification of Lactobacilli from Deep Carious Lesions by Means of Species-Specific PCR and MALDI-TOF Mass Spectrometry. Clinical Laboratory. ISSN 1433-6510. 59(11-12), s. 1373–1379. doi: 10.7754/Clin.Lab.2013.121225.
  • Størvold, Gro Leite; Landskron, Johannes; Strozynski, Margarita Anna; Arntzen, Magnus; Koehler, Christian & Kalland, Maria Elisabeth [Vis alle 8 forfattere av denne artikkelen] (2013). Quantitative profiling of tyrosine phosphorylation revealed changes in the activity of the T cell receptor signaling pathway upon cisplatin-induced apoptosis. Journal of Proteomics. ISSN 1874-3919. 91, s. 344–357. doi: 10.1016/j.jprot.2013.07.019.
  • Arczewska, Katarzyna; Tomazella, Gisele Guicardi; Lindvall, Jessica M.; Kassahun, Henok; Maglioni, Silvia & Torgovnick, Alessandro [Vis alle 17 forfattere av denne artikkelen] (2013). Active Transcriptomic and Proteomic Reprogramming in the C. elegans Nucleotide Excision Repair Mutant xpa-1. Nucleic Acids Research (NAR). ISSN 0305-1048. 41(10), s. 5368–5381. doi: 10.1093/nar/gkt225.
  • Murrell, Wayne; Palmero, Emily Herrera; Bianco, John; Stangeland, Biljana; Joel, Mrinal & Paulson, Linda Marie [Vis alle 16 forfattere av denne artikkelen] (2013). Expansion of Multipotent Stem Cells from the Adult Human Brain. PLOS ONE. ISSN 1932-6203. 8(8). doi: 10.1371/journal.pone.0071334.
  • Moltu, Kristine; Bjørgo, Elisa; Berge, Torunn; Thiede, Bernd & Tasken, Kjetil (2013). A Proteomic Approach to Screening of Dynamic Changes in Detergent-Resistant Membranes from Activated Human Primary T Cells. Journal of Proteomics & Bioinformatics. ISSN 0974-276X. 6, s. 72–80. doi: 10.4172/jpb.1000264.
  • Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, Achim; Stein, Robert & Zimny-Arndt, Ursula [Vis alle 8 forfattere av denne artikkelen] (2013). High Resolution Quantitative Proteomics of HeLa Cells Protein Species Using Stable Isotope Labeling with Amino Acids in Cell Culture(SILAC), Two-Dimensional Gel Electrophoresis(2DE) and Nano-Liquid Chromatograpohy Coupled to an LTQ-OrbitrapMass Spectrometer. Molecular & Cellular Proteomics. ISSN 1535-9476. 12(2), s. 529–538. doi: 10.1074/mcp.M112.019372.
  • Arntzen, Magnus; Bull, Vibeke Hervik & Thiede, Bernd (2013). Cell Death Proteomics Database: Consolidating proteomics data on cell death. Journal of Proteome Research. ISSN 1535-3893. 12(5), s. 2206–2213. doi: 10.1021/pr4000703.
  • Koehler, Christian; Arntzen, Magnus; De Souza, Gustavo Antonio & Thiede, Bernd (2013). An Approach for Triplex-Isobaric Peptide Termini Labeling (Triplex-IPTL). Analytical Chemistry. ISSN 0003-2700. 85(4), s. 2478–2485. doi: 10.1021/ac3035508.
  • Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). A Rapid Approach for Isobaric Peptide Termini Labeling. Methods in molecular biology. ISSN 1064-3745. 893, s. 129–141. doi: 10.1007/978-1-61779-885-6_10.
  • Tomazella, Gisele Guicardi; Kassahun, Henok; Nilsen, Hilde & Thiede, Bernd (2012). Quantitative Proteome Analysis Reveals RNA Processing Factors As Modulators of Ionizing Radiation-Induced Apoptosis in the C. elegans Germline. Journal of Proteome Research. ISSN 1535-3893. 11(8), s. 4277–4288. doi: 10.1021/pr300386z.
  • Bull, Vibeke Hervik & Thiede, Bernd (2012). Proteome analysis of tunicamycin-induced ER stress. Electrophoresis. ISSN 0173-0835. 33(12), s. 1814–1823. doi: 10.1002/elps.201100565.
  • Patron, Juan P.; Fendler, Annika; Bild, Matthias; Jung, Ulrike; Müller, Henrik & Arntzen, Magnus [Vis alle 13 forfattere av denne artikkelen] (2012). MiR-133b Targets Antiapoptotic Genes and Enhances Death Receptor-Induced Apoptosis. PLOS ONE. ISSN 1932-6203. 7(4). doi: 10.1371/journal.pone.0035345.
  • Khan, R; Rukke, HV; Ricomini, AP; Fimland, G; Arntzen, Magnus & Thiede, Bernd [Vis alle 7 forfattere av denne artikkelen] (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology. ISSN 0021-9193. 194(15), s. 3781–3788. doi: 10.1128/JB.00624-12.
  • Koehler, Christian; Arntzen, Magnus; Treumann, Achim & Thiede, Bernd (2012). Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Analytical and Bioanalytical Chemistry. ISSN 1618-2642. 404(4), s. 1103–1114. doi: 10.1007/s00216-012-5949-z.

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  • Bakketeig, Eris Aas; Olsen, Christine; Berg, Henriette Engen; Nyman, Tuula Anneli; Thiede, Bernd & Lundanes, Elsa [Vis alle 8 forfattere av denne artikkelen] (2021). Optimization of concatenation of fractions in comprehensive two dimensional liquid chromatography bottom-up proteomics.
  • Hanson, Ingunn; Pitman, Kathinka Elinor; Thiede, Bernd; Cai, Yiqing & Edin, Nina Frederike Jeppesen (2021). Proteomic Analysis of Low Dose-Rate Primed Cells and Extracellular Exosomes.
  • Dugarte, Maria Eugenia Chollet; andersen, elisabeth; de la Morena-Barrio, Maria Eugenia; Bravo-Perez, Carlos; Mowinckel, Marie-Christine & Myklebust, Christiane Fillion [Vis alle 12 forfattere av denne artikkelen] (2020). Characterizing Coagulation FVII from iPSC-Hepatocytes-like Cells: Setting the Basis for Cell Therapy Development. Blood. ISSN 0006-4971. 136. doi: 10.1182/blood-2020-139211.
  • Hanson, Ingunn; Edin, Nina Frederike J; Thiede, Bernd & Altanerova, Ursula (2020). Communication of radioprotective efects by TGF-β3.
  • Hanson, Ingunn; Altanerova, Ursula; Thiede, Bernd & Edin, Nina Frederike J (2020). Radioprotector TGF-β3 is secreted in exosomes and activated by LDR priming.
  • Berg, Henriette Engen; Halldórsson, Skarphéðinn; Thiede, Bernd; Vik-Mo, Einar O.; Lundanes, Elsa & Wilson, Steven Ray Haakon (2020). Micro pillar array columns for comprehensive proteomics.
  • Berg, Henriette Engen; Skottvoll, Frøydis Sved; Bjørseth, Kamilla; Sæterdal, Kristina Erikstad; Brandtzaeg, Ole Kristian & Vehus, Tore [Vis alle 11 forfattere av denne artikkelen] (2018). Development of nanoLC column technology for proteomic studies .
  • Eriksen, Gunnar Sundstøl; Thiede, Bernd & Solhaug, Anita (2018). Effects of an emerging Fusarium mycotoxin on hepatocytes.
  • Khan, Ayyad Ahmad Zartasht; Jackson, Catherine; Reppe, Sjur; Utheim, Tor Paaske; Olstad, Ole Kristoffer & Thiede, Bernd [Vis alle 7 forfattere av denne artikkelen] (2018). Sericin-Induced Melanogenesis in Cultured Retinal Pigment Epithelium is Associated with Elevated Levels of Hydrogen Peroxide.
  • Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug & Thiede, Bernd (2018). Author Correction: Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports. ISSN 2045-2322. 8. doi: 10.1038/s41598-018-28147-w.
  • López-Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil & Thiede, Bernd [Vis alle 8 forfattere av denne artikkelen] (2017). AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle. ISSN 1538-4101. 16(10), s. 947–956. doi: 10.1080/15384101.2017.1310350..
  • Sved Skottvoll, Frøydis; Lund, Kaja; Røberg-Larsen, Hanne; Berg, Henriette Sjånes; Thiede, Bernd & Lundanes, Elsa [Vis alle 7 forfattere av denne artikkelen] (2017). Diagnostic potential of exosomes: The purification issue.
  • Jensen, Janicke Liaaen; Utheim, Øygunn Aass; Chen, Xiangjun; Thiede, Bernd; Aqrawi, Lara Adnan & Rusthen, Shermin [Vis alle 9 forfattere av denne artikkelen] (2016). Searching for Disease Biomarkers for Primary Sjögren’s Syndrome Based on Oral and Ocular Patient Examinations.
  • Jungblut, Peter R.; Thiede, Bernd & Schluter, H (2016). Towards deciphering proteomes via the proteoform, protein speciation, moonlighting and protein code concepts. Journal of Proteomics. ISSN 1874-3919. 134, s. 1–4. doi: 10.1016/j.jprot.2016.01.012.
  • Lopez Soop, Graciela; Reiner, Andrew Henry; Thiede, Bernd; Collas, Philippe & Küntziger, Thomas Michel (2015). Regulation of Normal Mitotic Progression by A-kinase Anchoring Protein 95 (AKAP95).
  • Perdreau, Harmonie; Guldsten, Hanne; Progida, Cinzia; Thiede, Bernd; Bakke, Oddmund & Morth, Jens Preben (2014). Molecular and Structural Characterization of Sjögren syndrome/scleroderma autoantigen 1 (SSSCA1).
  • Bousquet, Paula; Abshiru, Nebiyu; Sandvik, Joe Alexander; Pettersen, Erik O; Thiede, Bernd & Woods, Robert [Vis alle 8 forfattere av denne artikkelen] (2014). Anti-tumor antibodies and hypoxia.
  • Arntzen, Magnus & Thiede, Bernd (2013). Cell Death Proteomics.
  • Bousquet, Paula; Abshiru, Nebiyu; Johansen, Rune Forstrøm; Bjørås, Magnar; Sandvik, Joe Alexander & Pettersen, Erik O [Vis alle 10 forfattere av denne artikkelen] (2013). A structural and functional study of anti-ganglioside antibodies. International Journal of Molecular Medicine. ISSN 1107-3756. 32, s. S42–S42.
  • Perdreau, Harmonie; Barfeld, Stefan; Guldsten, Hanne; Thiede, Bernd; Mills, Ian Geoffrey & Morth, Jens Preben (2013). Molecular and Structural Characterization of Sjögren syndrome/scleroderma autoantigen 1, a new binding partner of Tankyrase regulated by the oncogene c-Myc.
  • Bousquet, Paula; Thiede, Bernd; Moreno, Ernesto & Krengel, Ute (2012). Antitumor antibodies - Crystallization and MS analysis.
  • Demko, Viktor; Ako, Ako Eugene; Perroud, Pierre-Francois; Liang, Zhe; Johansen, Wenche & Wilson, Robert [Vis alle 10 forfattere av denne artikkelen] (2012). Searching for cellular targets of the plant calpain DEK1.
  • Khan, Rabia; Rukke, Håkon Valen; Filho, Antonio Pedro Ricomini; Fimland, Gunnar; Arntzen, Magnus & Thiede, Bernd [Vis alle 7 forfattere av denne artikkelen] (2012). Extracellular Identification of a Processed Type II ComR/ComS Pheromone of Streptococcus mutans. Journal of Bacteriology. ISSN 0021-9193. 194(15), s. 3781–3788. Fulltekst i vitenarkiv
  • Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, A; Stein, Robert & Zimny-Amdt, Ursula [Vis alle 8 forfattere av denne artikkelen] (2012). Protein species high resolution quantitative proteomics of HeLa cells using SILAC-2-DE-nanoLC/LTQ-Orbitrap mass spectrometry. Molecular & Cellular Proteomics. ISSN 1535-9476. doi: 10.1074/mcp.M112.019372.
  • Berg, Henriette Engen; Wilson, Steven Ray Haakon; Lundanes, Elsa; Thiede, Bernd & Vik-Mo, Einar Osland (2022). Exploring miniaturized chromatography formats and sample preparation methods for shotgun proteomics in limited biological samples. Department of Chemistry, Faculty of Mathematics and Natural Sciences, University of Oslo. ISSN 1501-7710. 2022(2522).
  • Bakketeig, Eris Aas; Wilson, Steven Ray Haakon; Lundanes, Elsa; Berg, Henriette Engen; Olsen, Christine & Reubsaet, Leon [Vis alle 8 forfattere av denne artikkelen] (2021). The setup and optimization of a complete global proteomics two-dimensional liquid chromatography system, using Spider Fractionation. Universitetet i Oslo, Det matematisk-naturvitenskapelige fakultet.
  • Köhler, Christian Jeffrey; Thiede, Bernd; Lundanes, Elsa & Greibrokk, Tyge (2013). Isobaric peptide termini labeling (IPTL) - An alternative approach for quantitative proteomics. Universitetet i Oslo.

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Publisert 12. nov. 2015 15:22 - Sist endret 12. juli 2022 22:41