Karoline Saubrekka

• Thiele, Stefan; Vader, Anna; Thomson, Stuart; Saubrekka, Karoline; Petelenz-Kurdziel, Elzbieta Anna & Müller, Oliver [Vis alle 8 forfattere av denne artikkelen] (2023). Seasonality of the bacterial and archaeal community composition of the Northern Barents Sea. Frontiers in Microbiology. 14. doi: 10.3389/fmicb.2023.1213718. Fulltekst i vitenarkiv Vis sammendrag

  The Barents Sea is a transition zone between the Atlantic and the Arctic Ocean. The ecosystem in this region is highly variable, and a seasonal baseline of biological factors is needed to monitor the effects of global warming. In this study, we report the results from the investigations of the bacterial and archaeal community in late winter, spring, summer, and early winter along a transect through the northern Barents Sea into the Arctic Ocean east of Svalbard using 16S rRNA metabarcoding. Winter samples were dominated by members of the SAR11 clade and a community of nitrifiers, namely Cand. Nitrosopumilus and LS-NOB (Nitrospinia), suggest a prevalence of chemoautotrophic metabolisms. During spring and summer, members of the Gammaproteobacteria (mainly members of the SAR92 and OM60(NOR5) clades, Nitrincolaceae) and Bacteroidia (mainly Polaribacter, Formosa, and members of the NS9 marine group), which followed a succession based on their utilization of different phytoplankton-derived carbon sources, prevailed. Our results indicate that Arctic marine bacterial and archaeal communities switch from carbon cycling in spring and summer to nitrogen cycling in winter and provide a seasonal baseline to study the changes in these processes in response to the effects of climate change.

• Kohlbach, Doreen; Goraguer, Lucie; Bodur, Yasemin V.; Müller, Oliver; Arumí, Martí Amargant & Blix, Katalin [Vis alle 23 forfattere av denne artikkelen] (2023). Earlier sea-ice melt extends the oligotrophic summer period in the Barents Sea with low algal biomass and associated low vertical flux. Progress in Oceanography. ISSN 0079-6611. 213. doi: 10.1016/j.pocean.2023.103018. Fulltekst i vitenarkiv Vis sammendrag

  The decrease in Arctic sea-ice extent and thickness as a result of global warming will impact the timing, duration, magnitude and composition of phytoplankton production with cascading effects on Arctic marine food-webs and biogeochemical cycles. Here, we elucidate the environmental drivers shaping the composition, abundance, biomass, trophic state and vertical flux of protists (unicellular eukaryotes), including phytoplankton, in the Barents Sea in late August 2018 and 2019. The two years were characterized by contrasting sea-ice conditions. In August 2018, the sea-ice edge had retreated well beyond the shelf break into the Nansen Basin (>82◦N), while in 2019, extensive areas of the northwestern Barents Sea shelf (>79◦N) were still ice-covered. These contrasting sea-ice conditions resulted in marked interannual differences in the pelagic protist community structure in this area. In August 2018, the protist community was in a post-bloom stage of seasonal succession characterized by oligotrophic surface waters and dominance of small-sized phytoplankton and heterotrophic protists (predominantly flagellates and ciliates) at most stations. In 2019, a higher contribution of autotrophs and large-celled phytoplankton, particularly diatoms, to total protist biomass compared to 2018 was reflected in higher chlorophyll a concentrations and suggested that the protist community was still in a late bloom stage at some stations. It is noteworthy that particularly diatoms contributed a considerably higher proportion to the protist biomass at the ice-covered stations in both years compared to the open-water stations. This pattern was also evident in the higher vertical protist biomass flux in 2019, dominated by dinoflagellates and diatoms, compared to 2018. Our results suggest that the predicted transition toward an ice-free Barents Sea will lengthen the oligotrophic summer period with low algal biomass and associated low vertical flux.

• Thiele, Stefan; Vader, Anna; Thomson, Stuart; Saubrekka, Karoline; Petelenz-Kurdziel, Elzbieta Anna & Armo, Hilde Rief [Vis alle 10 forfattere av denne artikkelen] (2023). The summer bacterial and archaeal community composition of the northern Barents Sea. Progress in Oceanography. ISSN 0079-6611. 215, s. 1–9. doi: 10.1016/j.pocean.2023.103054. Fulltekst i vitenarkiv Vis sammendrag

  Climate change related alterations in the Arctic have influences on the marine ecosystems, in particular on phytoplankton bloom dynamics. Since phytoplankton blooms are the main provider of carbon sources to the microbial loop, the bacterial and archaeal community are affected by the changes as well. Warmer water and less sea ice can lead to an earlier onset of phytoplankton blooms and consequently also to changes in the bacterial and archaeal community dynamics throughout Arctic summers. Here, we compared the bacterial and archaeal community composition during three summers (2018, 2019, and 2021) along a transect from the Barents Sea to the Arctic Ocean north of Svalbard. We used 16S rRNA gene sequencing to investigate changes in the communities in time and space. The main results showed that, Gammaproteobacteria (Nitrincolaceae), Bacteroidia (Polaribacter), and Alphaproteobacteria (SAR11 clade 1a members) dominated the bacterial and archaeal community in the surface waters but varied in abundance patterns between the years. The variations are potentially a result of different phytoplankton bloom stages and consequently differences in the availability of carbon sources. The distinctly different deep water communities were dominated by Candidatus Nitrosopumilus, Marinimicrobia, and members of the SAR324 clade in all years. The results indicate that changes in phytoplankton bloom dynamics can influence bacterial and archaeal community and thereby marine carbon cycling in surface waters, although direct links to the effects of global warming remain uncertain.

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• Kline, Simon Hasselø; Saubrekka, Karoline; Eikrem, Wenche; Valestrand, Louise; Egge, Elianne Dunthorn & Eiler, Alexander [Vis alle 8 forfattere av denne artikkelen] (2024). Seasonal dynamics of the protist community in the Oslofjord and Skagerrak in a changing ocean. Fulltekst i vitenarkiv Vis sammendrag

  Protists and prokaryotes compose approximately 90% of the biomass in the oceans, and any changes within this microbial community are likely to have reverberating effects throughout the ecosystem. Due to climate coastal marine systems are experiencing increased freshwater discharge from land and a darkening of the water column along with changes in nutrient concentrations. The phenology is also changing and in the inner Oslofjord the spring blooms starts on average 2 weeks later that 15 years ago. The causes for this delay in unclear. In this study we examine the diversity and seasonal dynamics of the protist community by metabarcoding in the inner and outer Oslofjord, and possible changes during 14 years. Monthly plankton samples were collected at two localities and two depths during 2023 and similar samples were collected in 2009-2011, to be sequenced by current high throughput technology (Illumina). Various environmental parameters have been measured including CDOM (colored dissolved organic matter). We ask whether browning or other physico-chemical conditions can explain the delayed spring bloom and other observed changes in the protist community in the Oslofjord and Skagerrak.

• Kwasniewski, Slawomir; Altenburger, Andreas; Assmy, Philipp Kurt Wolf; Bluhm, Bodil Annikki Ulla Barbro; Dabrowska, Anna Maria & Edvardsen, Bente [Vis alle 25 forfattere av denne artikkelen] (2023). Biodiversity in the northern Barents Sea and adjacent Nansen Basin – towards an updated inventory. Fulltekst i vitenarkiv Vis sammendrag

  Biodiversity patterns shape and drive ecosystem processes and functions in the global ocean. Given the changing climate and recent agreements to protect ocean regions, current estimates of biodiversity must be assembled. Here, we present new estimates and spatial patters of taxon richness from microbes to mammals from a shelf-to-basin transect in the northern Barents Sea and southern Nansen Basin from seasonal sampling in 2018-2022 by the Nansen Legacy project. We find that estimates of taxon richness are higher on the shelf than in the basin for pelagic protists, zooplankton, and benthic macrobenthos, nematodes, and prokaryotes, but not for sympagic protists. Taxon richness varied seasonally for pelagic prokaryotes, protists, and zooplankton, but little for sympagic meiofauna, benthic prokaryotes and macrobenthos. Unsurprisingly, taxon richness was generally highest for single-celled taxa. Taxon-rich groups included: sympagic diatoms; pelagic prokaryotes (e.g., Alphaproteobacteria), diatoms, dinoflagellates, copepods; and benthic prokaryotes (with abundant taxa, e.g., Candidatus nitrosopumilus and Woesia), nematodes, and polychaetes. Unexpectedly absent - though known from earlier studies - were, for example, nematodes in sea ice. Ironically, at top (and perhaps other) trophic levels species richness is likely to be enhanced regionally for some time, while losses of Arctic (endemic) species will impact global biodiversity, and potentially Arctic ecosystem functioning

• Saubrekka, Karoline; Vader, Anna; Supraha, Luka; Andersen, Tom & Edvardsen, Bente (2023). Diversity and Distribution of Arctic Protists in Pelagic and Sympagic Habitats in the Northern Barents Sea as Revealed by Metabarcoding. Fulltekst i vitenarkiv
• Saubrekka, Karoline; Vader, Anna; Supraha, Luka & Edvardsen, Bente (2023). Diversity and distribution of Arctic protists in pelagic and sympagic habitats in the northern Barents Sea as revealed by metabarcoding. Fulltekst i vitenarkiv Vis sammendrag

  Protists play crucial roles in the marine ecosystems and in a rapidly changing Arctic it is important to reveal who are there, when and where, for future research and management. The aim of this study was to describe and compare the composition of protist communities in sea ice and pelagic habitats from samples collected in the northern Barents Sea along a transect in August 2018 with low sea-ice extent and 2019 with high sea-ice extent. Metabarcoding targeting the 18S rRNA gene revealed 3682 unique amplicon sequence variants (ASVs), a proxy for species, and clear difference in ASV composition in ice and pelagic habitats. The pelagic community showed interannual differences. In 2018 the community was dominated by dinoflagellates and nano- and pico-plankton such as Micromonas polaris. In 2019 a community with more centric diatoms was observed at ice edge stations. Members of the class Chrysophyceae dominated in melt ponds, whereas communities within the ice were dominated by dinoflagellates and pennate diatoms. The community changed from top to bottom of the ice cores and the diversity was higher in thick than thin ice. Just below the ice, dinoflagellate ASVs dominated together with Phaeocystis. Our results indicate that protist communities are distinct and specialized by habitat. With further ocean warming, pelagic communities may shift towards smaller flagellates, and thinning of the sea ice may lead to a loss of habitats and diversity.

• Edvardsen, Bente; Supraha, Luka; Egge, Elianne Dunthorn & Saubrekka, Karoline (2023). Diversity and distribution of marine protists in the Arctic explored by a polyphasic approach. Fulltekst i vitenarkiv
• Saubrekka, Karoline (2021). The hidden forest in the Arctic. Fulltekst i vitenarkiv
• Walbækken, Hanna Myhre; Eikrem, Wenche; Edvardsen, Bente; Saubrekka, Karoline & Hofgaard, Antje (2023). Dinoflagellate diversity in the Barents Sea: a comparative identification analysis. Universitetet i Oslo. Fulltekst i vitenarkiv
• Dankel, Eli; Supraha, Luka; Edvardsen, Bente; Eikrem, Wenche & Saubrekka, Karoline (2023). Arktiske kalkflagellater: et morfologisk og molekylært dypdykk i det nordlige Barentshavet. Universitetet i Oslo. Fulltekst i vitenarkiv Vis sammendrag

  Oppblomstringer av kalkflagellater utgjør et viktig fundament for næringskjeden i Barentshavet. Fjernanalyse med satellittbilder har de siste tiårene dokumentert at denne oppblomstringen beveger seg nordover i takt med økende klimaendringer. Det er likevel fortsatt uvisst hva som skjer på artsnivå. Å forstå hvordan forekomsten til den enkelte art forandrer seg i møte med endrede miljøbetingelser, som redusert is og økende temperatur, gjør at man enklere kan forutse hvordan fytoplanktonsamfunnet vil respondere på et fremtidig, varmere Arktis. For denne oppgaven ble det hentet inn vannprøver fra syv stasjoner på et sør-nord-transekt i Barentshavet i august 2018 og 2019 under tokt i regi av forskningsprosjektet Arven etter Nansen (AeN). 2018 var globalt et av de varmeste årene på mange tiår, og Barentshavet var dermed isfritt den sommeren. I 2019 derimot var større deler av Barentshavet dekket av is. Prøver tatt for både svepeelektronmikroskopi (scanning electron microscopy, forkortet «SEM») og metastrekkoding (metabarcoding) ble brukt i oppgaven slik at resultatene fra metodene kunne sammenlignes. Formålet med SEM var å utføre både en kvalitativ og kvantitativ analyse av kalkflagellater. Metastrekkoding ble brukt til sekvensering av 18S rRNA-genet. I SEM fant jeg i prøvene fra 2018 Emiliania huxleyi, Coccolithus pelagicus, Papposphaera sarion, Papposphaera arctica, Wigwamma annulifera og Porsildia acerviphora. Utenom Coccolithus pelagicus og Wigwamma annulifera, ble de samme artene funnet i 2019. I tillegg ble Syracosphaera Marginiporata funnet i prøver fra et AeN-tokt i november-desember 2019. Artene fra 2018 var hovedsakelig til stede på den sørligste stasjonen i transektet, mens artene fra 2019 generelt ble funnet på flere forskjellige stasjoner. Fra metastrekkoding ble det registrert 13 OTUer (Operational Taxonomic Units) som er bestemt til kalkflagellat-taksa. Ettersom det stort sett mangler referansesekvenser for arktiske kalkflagellater, ble de fleste OTUene kun klassifisert til klasse eller orden. OTUene var for det meste til stede i prøvene fra den sørligste, og de to nordligste stasjonene. Det ble ikke observert et nevneverdig mønster i sammenheng med isdekket. Det ble derimot både for SEM og metastrekkoding observert at de fleste artene var til stede på stasjoner som i ulik grad ble påvirket av Den nordatlantiske havstrømmen. Resultatene er likevel ikke holdbare nok til å trekke en konklusjon om hvordan kalkflagellatsamfunnet i Barentshavet vil se ut i fremtiden. Ettersom de fleste OTUene viste lav taksonomisk oppløsning, og alle celler funnet i SEM ble bestemt til artsnivå, anbefaler jeg at SEM forblir den foretrukne metoden for kvalitativ og kvantitativ analyse av kalkflagellater.

• Edvardsen, Bente; Gryn, Khrystyna; Šupraha, Luka; Eikrem, Wenche & Saubrekka, Karoline (2023). Biodiversity and distribution of Arctic phytoplankton and ice algae. Universitetet i Oslo. Fulltekst i vitenarkiv
• Røsbak, Silje K.; Edvardsen, Bente; Eiler, Alexander; Saubrekka, Karoline & Fon, Mathias (2023). Mikrobielt samfunn i kulturer av Chrysochromulina leadbeateri og relaterte svepeflagellater, undersøkt med metastrekkoding. Universitetet i Oslo. Fulltekst i vitenarkiv Vis sammendrag

  Skadelige marine algeoppblomstringer er et tilbakevendende problem over hele verden, der skadene har en påvirkning på økosystemer og lokal økonomi. Chrysochromulina leadbeateri var årsak til en massiv fiskedød i 2019, men mekanismene bak denne oppblomstringen er fortsatt ukjent. Målet med oppgaven var å undersøke bakteriediversiteten i kulturer av den fiske-giftige Chrysochromulina leadbeateri, og sammenligne denne mot andre beslektede svepeflagellater, både hos potensielt giftige og ikke-giftige arter. I tillegg til dette ble bakteriediversiteten av mikrobiomet mellom fastsittende bakterier på algecellene og frittlevende bakterier i kultur undersøkt. I denne oppgaven ble det prokaryote mikrobiomet i kulturer av tre stammer av Chryochromulina leadbeateri og 6 stammer av beslektede svepeflagellatarter analysert. Dette ble gjort ved metastrekkoding av det ribosomale 16S rRNA-genet. Det ble påvist et mangfoldig mikrobiom der hele bakteriedatasettet inneholdt 3 rekker, 14 ordener og 53 slekter. Bakteriesamfunnets sammensetning bestod hovedsakelig av medlemmer i rekken Proteobacteria etterfulgt av medlemmer av rekken Bacteroidota, og kun noen få ASVer i rekken Actinobacteria. Av de 14 ordenene var Rhodobacterales, Flavobacteriales, Caulobacterales, Rhiszobiales og Cytophagales de mest vanlige. Av de 53 slektene var Marivita (Rhodobacterales) den mest abundante, etterfulgt av Roseovarius (Rhodobacterales), Jannaschia (Rhodobacterales), Hoefla (Rhizobiales), Seohaeicola (Rhodobacterales), Hyphomonas (Rhodobacterales) og Sulfitobacter (Rhodobacterales). Taksonomisk fordeling av bakterieslekter mellom de potensielt giftige og ikke-giftige svepeflagellatene viste forskjeller, der de potensielt giftige hadde flest unike identifiserte bakterieslekter. Når det gjelder alfadiversitet (forskjeller innad i et samfunn) viser de to gruppene derimot ingen store forskjeller i mikrobiomet. Det ble funnet en svak signifikant sammenheng i mikrobiomets betadiversitet (forskjeller mellom samfunn) mellom kulturer av potensielt giftige og ikke-giftige svepeflagellater, der svepeflagellatens giftighet innen slekt hadde en svak effekt i denne studien. I tillegg viste slekten til svepeflagellaten til å ha en signifikant betydning for hvilke bakteriearter som ble funnet i algekulturer. Ved en sammenligning av fordelingen av bakterieslekter som er fastsittende til algecellen og frittlevende i algekultur, deler de to gruppene 80 % av bakterieslektene, og har dermed høy likhet. De frittlevende bakteriene har høyest antall ASVer, noe som indikerer at de fleste bakterie-typene lever fritt i kultur. Dette vises også ved de statistiske analysene, der alfadiversiteten for de frittlevende bakteriene i kultur har et signifikant rikere mikrobiom i forhold til fastsittende bakterier til algecellen. Betadiversiteten mellom fastsittende og frittlevende bakterier viser derimot ingen signifikante forskjeller, som vil si at mikrobiom-sammensetningen ikke kan forklares ut ifra om det er fastsittende på algecellene eller frittlevende i kultur.

• Ludvigsen, Martin; Assmy, Philipp; Adams, Matthew James Samuel; Arumi, Marti A.; Mo-Bjørkelund, Tore & Bodur, Yasemin V. [Vis alle 36 forfattere av denne artikkelen] (2022). Seasonal cruise Q2 2021: Cruise Report. Septentrio Academic Publishing. Fulltekst i vitenarkiv Vis sammendrag

  The spring season was the target for the Nansen Legacy cruise organized in late April and first half of May 2021 following the transect defined for this series of cruises to capture the variations of the year sampling physical, biological and chemical conditions in the ice and the sea. The transect went through both open water and ice. Seven process stations were visited (P1 through P7) together with smaller NLEG stations according to the program for the seasonal investigations. The first station (P1) was in open waters, while the remaining six main station had ice coverage of varying degree. Each of the process stations lasted 24 hours or more to allow a full diurnal cycle. Sampling included ice physics, ice samples, phytoplankton, zooplankton, marine chemistry and eco toxicology using acoustic, optical and robotics methods together with lab analyses of physical samples. Remote sensing data were also matched with in situ observations of both sea and ice conditions.

• Reigstad, Marit; Gabrielsen, Tove M.; Amargant-Arumi, Marti; Amundsen, Rita; Bluhm, Bodil & Bodur, Yasemin V. [Vis alle 37 forfattere av denne artikkelen] (2022). Seasonal Cruise Q3: Cruise Report. Septentrio Academic Publishing. Fulltekst i vitenarkiv Vis sammendrag

  The Nansen Legacy Q3 cruise, 5-27 August 2019, initiated the seasonal investigations of the Nansen Legacy transect. The transect represent an environmental gradient going through the northern Barents Sea, and included 7 process stations (P1-P7) lasting 6-53 hrs. CTD stations were taken to increase the hydrographic resolution on the transect. The program included measurements and sampling from the atmosphere, sea ice, ocean and sea floor. Data collected ranged from physical observations, chemical, biological and geological data collection, and the aim was to link observations and measurements to improve our understanding of the systems involving both climate, human impacts and the ecosystems. Deployment of moorings and gliders extended the observational capacity in time and space, outside the cruise period.

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