David Peris Navarro

• Kinneberg, Vilde Bruhn; Lü, Dabao Sun; Peris, David; Ravinet, Mark & Skrede, Inger (2023). Introgression between highly divergent fungal sister species. Journal of Evolutionary Biology. ISSN 1010-061X. 36(8), s. 1133–1149. doi: 10.1111/jeb.14190. Fulltekst i vitenarkiv
• Peris, David; Ubbelohde, Emily J; Kuang, Meihua Christina; Kominek, Jacek; Langdon, Quinn K & Adams, Marie [Vis alle 23 forfattere av denne artikkelen] (2023). Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces. Nature Communications. ISSN 2041-1723. 14(1). doi: 10.1038/s41467-023-36139-2.
• Sorribes-Daudén, Raquel; Jordá, Tania; Peris, David; Martínez-Pastor, María Teresa & Puig, Sergi (2022). Adaptation of Saccharomyces Species to High-Iron Conditions. International Journal of Molecular Sciences. ISSN 1661-6596. 23(22). doi: 10.3390/ijms232213965. Fulltekst i vitenarkiv
• Peris, David; Lü, Dabao Sun; Kinneberg, Vilde Bruhn; Methlie, Ine-Susanne Hopland; Stapnes Dahl, Malin & Y. James, Timothy [Vis alle 8 forfattere av denne artikkelen] (2022). Large-scale fungal strain sequencing unravels the molecular diversity in mating loci maintained by long-term balancing selection. PLoS Genetics. ISSN 1553-7390. 18(3). doi: 10.1371/journal.pgen.1010097. Fulltekst i vitenarkiv Vis sammendrag

  Balancing selection, an evolutionary force that retains genetic diversity, has been detected in multiple genes and organisms, such as the sexual mating loci in fungi. However, to quantify the strength of balancing selection and define the mating-related genes require a large number of strains. In tetrapolar basidiomycete fungi, sexual type is determined by two unlinked loci, MATA and MATB. Genes in both loci define mating type identity, control successful mating and completion of the life cycle. These loci are usually highly diverse. Previous studies have speculated, based on culture crosses, that species of the non-model genus Trichaptum (Hymenochaetales, Basidiomycota) possess a tetrapolar mating system, with multiple alleles. Here, we sequenced a hundred and eighty strains of three Trichaptum species. We characterized the chromosomal location of MATA and MATB, the molecular structure of MAT regions and their allelic richness. The sequencing effort was sufficient to molecularly characterize multiple MAT alleles segregating before the speciation event of Trichaptum species. Analyses suggested that long-term balancing selection has generated trans-species polymorphisms. Mating sequences were classified in different allelic classes based on an amino acid identity (AAI) threshold supported by phylogenetics. 17,550 mating types were predicted based on the allelic classes. In vitro crosses allowed us to support the degree of allelic divergence needed for successful mating. Even with the high amount of divergence, key amino acids in functional domains are conserved. We conclude that the genetic diversity of mating loci in Trichaptum is due to long-term balancing selection, with limited recombination and duplication activity. The large number of sequenced strains highlighted the importance of sequencing multiple individuals from different species to detect the mating-related genes, the mechanisms generating diversity and the evolutionary forces maintaining them.

• Devin P., Bendixsen; Peris, David & Stelkens, Rike (2021). Patterns of Genomic Instability in Interspecific Yeast Hybrids With Diverse Ancestries. Frontiers in Fungal Biology. 2. doi: 10.3389/ffunb.2021.742894. Fulltekst i vitenarkiv
• Sorribes-Daudén, Raquel; Peris, David; Martínez-Pastor, María Teresa & Puig, Sergi (2020). Structure and function of the vacuolar Ccc1/VIT1 family of iron transporters and its regulation in fungi. Computational and Structural Biotechnology Journal. ISSN 2001-0370. 18, s. 3712–3722. doi: 10.1016/j.csbj.2020.10.044.
• Gonzalez Flores, Melisa; Rodríguez, María Eugenia; Peris, David; Querol, Amparo; Barrio, Eladio & Lopes, Christian Ariel (2020). Human-associated migration of Holarctic Saccharomyces uvarum strains to Patagonia. Fungal ecology. ISSN 1754-5048. 48, s. 1–11. doi: 10.1016/j.funeco.2020.100990. Fulltekst i vitenarkiv

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• Peris, David (2023). Biodiversitat de fongs i les seues aplicacions industrials.
• Peris, David (2023). Biodiversitat de fongs i les seues aplicacions industrials.
• Peris, David (2023). Biodiversitat de fongs i les seues aplicacions industrials.
• Peris, David (2023). Wild yeasts and their domestication for brewing applications.
• Orellana-Muñoz, Sara; Stelkens, Rike; Kauserud, Håvard; Skrede, Inger & Peris, David (2023). Generating a large collection of Saccharomyces polyploids to study their adaptation to food-related industrial conditions.
• Orellana-Muñoz, Sara; Ramírez-Aroca, Lainy; Querol, Amparo & Peris, David (2023). Polyploidization: can we predict its evolutionary pathway? .
• García-Guiterrez, Laura; Baena-Rojas, Belén; Ruiz, Maite; Mellado, Emilia; Lucio, Jose & Ruiz-Gaitán, Alba C. [Vis alle 10 forfattere av denne artikkelen] (2023). Mycospitalomics: caracterización del microbioma de ambientes hospitalarios para prevenir las infecciones fúngicas invasivas.
• Orellana-Muñoz, Sara; Hittinger, Chris Todd; Querol, Amparo; Puig, Sergi & Peris, David (2023). Caracterización de linajes de levadura y su potencial fenotípico para su uso en la industria de los alimentos.
• Orellana-Muñoz, Sara; Borg, Nora; Nygård, Elise; Kauserud, Håvard; Skrede, Inger & Peris, David (2023). Yeast bioprospecting and genomics for a food circular bioeconomy.
• Lü, Dabao Sun; Peris, David; Sønstebø, Jørn Henrik; Maurice, Sundy; Kauserud, Håvard & Ravinet, Mark [Vis alle 7 forfattere av denne artikkelen] (2023). Population genomics reveal multiple lineages with leaky intersterility barriers in the widespread forest fungus Trichaptum abietinum.
• Lü, Dabao Sun; Peris, David; Sønstebø, Jørn Henrik; Maurice, Sundy; Kauserud, Håvard & Ravinet, Mark [Vis alle 7 forfattere av denne artikkelen] (2023). Understanding the nature of the reproductive barriers within the wood decay species Trichaptum abietinum.
• Lü, Dabao Sun; Peris Navarro, David; Sønstebø, Jørn Henrik; Maurice, Sundy; Kauserud, Håvard & Ravinet, Mark [Vis alle 7 forfattere av denne artikkelen] (2022). Global phylogeography of a wood decay fungus indicates reinforcement on secondary contact.
• Lü, Dabao Sun; Methlie, Ine-Susanne Hopland; Peris Navarro, David; Kauserud, Håvard & Skrede, Inger (2022). Postglacial history of a widespread forest fungus in Europe: Migration out of multiple refugia followed by secondary admixture .
• Peris Navarro, David; Lü, Dabao Sun; Kinneberg, Vilde Bruhn; Methlie, Ine-Susanne Hopland; James, Timothy & Kauserud, Håvard [Vis alle 7 forfattere av denne artikkelen] (2022). Ancient mating alleles maintained by balancing selection in basidiomycete fungi.
• Peris, David (2022). Distintas levaduras para distintas cervezas.
• Orellana-Muñoz, Sara; Stelkens, Rike; Kauserud, Håvard; Skrede, Inger & Peris, David (2022). A high-throughput pipeline for studying the effects of polyploidization during adaptive evolution in yeasts.
• Peris, David; Ubbelohde, Emily J; Wrobel, Russell L & Hittinger, Chris Todd (2022). Saccharomyces, a yeast genus model for understanding “well-established” metabolic pathways.
• Sorribes-Daudén, Raquel; Miró, Pilar; Jordá, Tania; Romero, Antonia María; Peris, David & Martínez-Pastor, María Teresa [Vis alle 7 forfattere av denne artikkelen] (2022). Deciphering iron resistance in Saccharomyces genus.
• Kinneberg, Vilde Bruhn; Lü, Dabao Sun; Peris, David; Ravinet, Mark & Skrede, Inger (2022). Ancient introgression between highly divergent fungal sister species.
• Lü, Dabao Sun; Peris, David; Sønstebø, Jørn Henrik; Maurice, Sundy; Kauserud, Håvard & Ravinet, Mark [Vis alle 7 forfattere av denne artikkelen] (2022). Understanding the nature of the reproductive barriers within the wood decay species Trichaptum abietinum.
• Peris, David; Lü, Dabao Sun; Kinneberg, Vilde Bruhn; Methlie, Ine-Susanne Hopland; Dahl, Malin Stapnes & James, Timothy Y. [Vis alle 8 forfattere av denne artikkelen] (2022). Long-term balancing selection in a white-root fungi.
• Peris, David; Lü, Dabao Sun; Kinneberg, Vilde Bruhn; Methlie, Ine-Susanne Hopland; Dahl, Malin Stapnes & James, Timothy Y. [Vis alle 8 forfattere av denne artikkelen] (2021). Northern hemisphere fungal specimens unravel dynamic and polymorphic nature of mating loci.
• Peris, David; Alexander, William G; Fisher, Kaitlin; Moriarty, Ryan Victoria; Basuino, Mira G & Ubbelohde, Emily J [Vis alle 12 forfattere av denne artikkelen] (2020). Combining and improving phenotypic traits through the generation of synthetic two- and six-species yeast hybrids.
• Dabao Sun, Lu; Kauserud, Håvard; Maurice, Sundy; Peris, David; Ravinet, Mark & Sønstebø, Jørn Henrik [Vis alle 7 forfattere av denne artikkelen] (2020). Population genomics of Trichaptum abietinum – a window into fungal speciation.
• Peris, David; Alexander, William G; Fisher, Kaitlin; Moriarty, Ryan Victoria; Basuino, Mira G & Ubbelohde, Emily J [Vis alle 8 forfattere av denne artikkelen] (2020). Synthetic hybrids of six yeast species.
• Lü, Dabao Sun; Peris, David; Skrede, Inger; Kauserud, Håvard; Ravinet, Mark & Sønstebø, Jørn Henrik [Vis alle 8 forfattere av denne artikkelen] (2023). Fungi contain multitudes: Tempo and modes of evolution in the purplepore bracket fungus Trichaptum. University of Oslo. ISSN 1501-7710. Fulltekst i vitenarkiv

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