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Pierre Chymkowitch

Bilde av Pierre Chymkowitch
Rom 2303B
Brukernavn
Besøksadresse Blindernveien 31 0371 Oslo
Postadresse Postboks 1066 Blindern 0316 Oslo
Andre tilknytninger LINK-Senter for læring og utdanning (Student)

Academic interest: Transcriptional and epigenetic regulation of cell fate and identity

The study of molecular mechanisms that govern cellular differentiation and fate is key to the understanding of development, metabolism but also to the understanding of carcinogenesis. This research axis seeks to address the role of sumoylation-mediated gene control during cellular differentiation with a primary focus on adipose stem cells. The global rise of the obesity epidemic and associated diseases such as diabetes and cancer has rendered indispensable the study of adipose tissue formation and biology. We use state of the art high-throughput methods (ChIP-seq, CAGE, ATAC-seq, RNA-seq, MS, EM-seq, RIME Confocal microscopy, etc.) and classical biochemistry to identify the dynamics of chromatin-bound factors’ sumoylation, epigenetic marks and gene expression during adipocyte differentiation in human adipose stem cells, mouse 3T3L1 cells and mouse models.

Mer informasjon på min engelsk nettsteder

Emneord: Gene expression, Chromatin, Cell fate, Epigenetics, SUMOylation, Adipogenesis

Publikasjoner

  • Nothnagel, Patrizia Maria Christiane; Meslin, Paul-Arthur Richard; Wik, Jonas Aakre; Dufour, Damien; Strøm, Yunna Erika & Bjørås, Magnar [Vis alle 11 forfattere av denne artikkelen] (2026). Transient SUMOylation inhibition in human pre-adipocytes stably imprints a transcriptional beiging fate. Nucleic Acids Research (NAR). ISSN 0305-1048. 54(6), s. 1–22. doi: 10.1093/nar/gkag232. Fulltekst i vitenarkiv
  • Nothnagel, Patrizia Maria Christiane; Meslin, Paul-Arthur Richard; Wik, Jonas Aakre; Strøm, Yunna Erika; Bjørås, Magnar & Enserink, Jorrit [Vis alle 10 forfattere av denne artikkelen] (2025). Transient SUMOylation Inhibition In Human Pre-adipocytes Stably Imprints a Transcriptional Beiging Fate. bioRxiv (preprint article). 54(6). doi: 10.1101/2025.03.07.642034. Fulltekst i vitenarkiv
  • Dufour, Damien; Zhao, Xu; Chaleil, Florian; Nothnagel, Patrizia Maria Christiane; Bjørås, Magnar & Lefrançois-Martinez, Anne-Marie [Vis alle 8 forfattere av denne artikkelen] (2025). Pharmacological inhibition of SUMOylation with TAK-981 mimics genetic HypoSUMOylation in murine perigonadal white adipose tissue. Adipocyte. ISSN 2162-3945. 14(1). doi: 10.1080/21623945.2025.2474107. Fulltekst i vitenarkiv
  • Bjune, Jan-Inge; Laber, Samantha; Dyer, Laurence; Nothnagel, Patrizia Maria Christiane; Yamada, Shuntaro & Zhao, Xu [Vis alle 15 forfattere av denne artikkelen] (2025). IRX3 controls a SUMOylation-dependent differentiation switch in adipocyte precursor cells. Nature Communications. 16. doi: 10.1038/s41467-025-62361-1. Fulltekst i vitenarkiv
  • Corrales, Jeanne Gaspar; Alonso, Lucia Ramos; González-Sabín, Javier; Ríos-Lombardía, Nicolás; Trevijano-Contador, Nuria & Berg, Henriette Engen [Vis alle 12 forfattere av denne artikkelen] (2024). Characterization of a selective, iron-chelating antifungal compound that disrupts fungal metabolism and synergizes with fluconazole. Microbiology spectrum. 12(2). doi: 10.1128/spectrum.02594-23. Fulltekst i vitenarkiv
  • Alonso, Lucia Ramos; Holland, Petter; Gras, Stéphanie Le; Zhao, Xu; Jost, Bernard & Bjørås, Magnar [Vis alle 9 forfattere av denne artikkelen] (2023). Mitotic chromosome condensation resets chromatin to safeguard transcriptional homeostasis during interphase. Proceedings of the National Academy of Sciences of the United States of America (PNAS). ISSN 0027-8424. 120(4). doi: 10.1073/pnas.2210593120. Fulltekst i vitenarkiv
  • Alonso, Lucia Ramos & Chymkowitch, Pierre (2023). Maintaining transcriptional homeostasis during cell cycle. Transcription. ISSN 2154-1264. doi: 10.1080/21541264.2023.2246868. Fulltekst i vitenarkiv
  • Zhao, Xu; Hendriks, Ivo A; Gras, Stephanie Le; Ye, Tao; Alonso, Lucia Ramos & P, Aurélie Nguéa [Vis alle 13 forfattere av denne artikkelen] (2022). Waves of sumoylation support transcription dynamics during adipocyte differentiation. Nucleic Acids Research (NAR). ISSN 0305-1048. 50(3), s. 1351–1369. doi: 10.1093/nar/gkac027. Fulltekst i vitenarkiv
  • Enserink, Jorrit & Chymkowitch, Pierre (2022). Cell Cycle-Dependent Transcription: The Cyclin Dependent Kinase Cdk1 Is a Direct Regulator of Basal Transcription Machineries. International Journal of Molecular Sciences. ISSN 1661-6596. 23(3), s. 1–23. doi: 10.3390/ijms23031293. Fulltekst i vitenarkiv
  • Alonso, Lucia Ramos; Llorente, Ignacio Garcia; Enserink, Jorrit & Chymkowitch, Pierre (2022). Analysis of the pheromone signaling pathway by RT-qPCR in the budding yeast Saccharomyces cerevisiae. STAR Protocols. 3(1). doi: 10.1016/j.xpro.2022.101210. Fulltekst i vitenarkiv
  • Llorente, Ignacio Garcia; Munoz, Sara Orellana; Alonso, Lucia Ramos; Andersen, Aram Nikolai; Zimmermann, Christine & Eriksson, Jens [Vis alle 11 forfattere av denne artikkelen] (2021). Kel1 is a phosphorylation-regulated noise suppressor of the pheromone signaling pathway. Cell reports. 37(13), s. 1–20. doi: 10.1016/j.celrep.2021.110186. Fulltekst i vitenarkiv
  • P, Aurélie Nguéa; Robertson, Joseph; Herrera, Maria Carmen; Chymkowitch, Pierre & Enserink, Jorrit (2019). Desumoylation of RNA polymerase III lies at the core of the Sumo stress response in yeast. Journal of Biological Chemistry. ISSN 0021-9258. 294(49), s. 18784–18795. doi: 10.1074/jbc.RA119.009721. Fulltekst i vitenarkiv
  • Chymkowitch, Pierre & Enserink, Jorrit (2018). Regulation of tRNA synthesis by posttranslational modifications of RNA polymerase III subunits. Biochimica et Biophysica Acta. Gene Regulatory Mechanisms. ISSN 1874-9399. 1861(4), s. 310–319. doi: 10.1016/j.bbagrm.2017.11.001. Fulltekst i vitenarkiv
  • Kruitwagen, Tom; Chymkowitch, Pierre; Denoth-Lippuner, Annina; Enserink, Jorrit & Barral, Yves (2018). Centromeres License the Mitotic Condensation of Yeast Chromosome Arms. Cell. ISSN 0092-8674. 175(3), s. 780–795.e15. doi: 10.1016/j.cell.2018.09.012. Fulltekst i vitenarkiv
  • Herrera, Maria Carmen; Chymkowitch, Pierre; Robertson, Joseph; Eriksson, Jens; Bøe, Stig Ove & Alseth, Ingrun [Vis alle 7 forfattere av denne artikkelen] (2018). Cdk1 gates cell cycle-dependent tRNA synthesis by regulating RNA polymerase III activity. Nucleic Acids Research (NAR). ISSN 0305-1048. 46(22), s. 11698–11711. doi: 10.1093/nar/gky846. Fulltekst i vitenarkiv
  • Zimmermann, Christine; Llorente, Ignacio Garcia; Omerzu, Manja; Chymkowitch, Pierre; Zhang, Beibei & Enserink, Jorrit (2017). Mapping the synthetic dosage lethality network of CDK1/CDC28. G3: Genes, Genomes, Genetics. 7(6), s. 1753–1766. doi: 10.1534/g3.117.042317. Fulltekst i vitenarkiv
  • Chymkowitch, Pierre; P, Aurélie Nguéa; Aanes, Håvard; Robertson, Joseph; Klungland, Arne & Enserink, Jorrit (2017). TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity. Proceedings of the National Academy of Sciences of the United States of America (PNAS). ISSN 0027-8424. 114(5), s. 1039–1044. doi: 10.1073/pnas.1615093114. Fulltekst i vitenarkiv
  • Chymkowitch, Pierre; P, Aurélie Nguéa & Enserink, Jorrit (2015). SUMO-regulated transcription: Challenging the dogma. Bioessays. ISSN 0265-9247. 37(10), s. 1095–1105. doi: 10.1002/bies.201500065. Fulltekst i vitenarkiv
  • Chymkowitch, Pierre; P, Aurélie Nguéa; Aanes, Håvard; Koehler, Christian; Thiede, Bernd & Lorenz, Susanne [Vis alle 9 forfattere av denne artikkelen] (2015). Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes. Genome Research. ISSN 1088-9051. 25(6), s. 897–906. doi: 10.1101/gr.185793.114. Fulltekst i vitenarkiv
  • Zimmermann, Christine; Santos, Aline; Gable, Kenneth; Epstein, Sharon; Gururaj, Charulatha & Chymkowitch, Pierre [Vis alle 16 forfattere av denne artikkelen] (2013). TORC1 Inhibits GSK3-Mediated Elo2 Phosphorylation to Regulate Very Long Chain Fatty Acid Synthesis and Autophagy. Cell reports. 5(4), s. 1036–1046. doi: 10.1016/j.celrep.2013.10.024. Fulltekst i vitenarkiv
  • Chymkowitch, Pierre & Enserink, Jorrit (2013). The cell cycle rallies the transcription cycle: Cdc28/Cdk1 is a cell cycle-regulated transcriptional CDK. Transcription. ISSN 2154-1264. 4(1), s. 3–6. doi: 10.4161/trns.22456. Fulltekst i vitenarkiv
  • Chymkowitch, Pierre; Eldholm, Vegard; Lorenz, Susanne; Zimmermann, Christine; Lindvall, Jessica M. & Bjørås, Magnar [Vis alle 8 forfattere av denne artikkelen] (2012). Cdc28 kinase activity regulates the basal transcription machinery at a subset of genes. Proceedings of the National Academy of Sciences of the United States of America (PNAS). ISSN 0027-8424. 109(26), s. 10450–10455. doi: 10.1073/pnas.1200067109. Fulltekst i vitenarkiv
  • Zimmermann, Christine; Chymkowitch, Pierre; Eldholm, Vegard; Putnam, Christopher D.; Lindvall, Jessica Margareta & Omerzu, Manja [Vis alle 9 forfattere av denne artikkelen] (2011). A chemical-genetic screen to unravel the genetic network of CDC28/CDK1 links ubiquitin and Rad6-Bre1 to cell cycle progression. Proceedings of the National Academy of Sciences of the United States of America (PNAS). ISSN 0027-8424. 108(46), s. 18748–18753. doi: 10.1073/pnas.1115885108. Fulltekst i vitenarkiv

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Publisert 9. juli 2020 13:51 - Sist endret 6. aug. 2026 08:39