Lex Nederbragt

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Emneord: Livsvitenskap - life science, Bioinformatikk

Publikasjoner

  • Elgvin, Tore Oldeide; Trier, Cassandra Nicole; Tørresen, Ole Kristian; Hagen, Ingerid; Lien, Sigbjørn; Nederbragt, Alexander Johan; Ravinet, Mark Simon Paul; Jensen, Henrik & Sætre, Glenn-Peter (2017). The genomic mosaicism of hybrid speciation. Science Advances.  ISSN 2375-2548.  3 . doi: 10.1126/sciadv.1602996 Fulltekst i vitenarkiv
  • Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn Sverre; Johansen, Morten; Mora, Antonio M.; Lund-Andersen, Christin; Fromm, Bastian; Eskeland, Ragnhild; Gabrielsen, Odd Stokke; Ferkingstad, Egil; Nakken, Sigve; Bengtsen, Mads; Nederbragt, Alexander Johan; Thorarensen, Hildur Sif; Andreas Akse, Johannes; Glad, Ingrid Kristine; Hovig, Johannes Eivind & Sandve, Geir Kjetil (2017). GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome . GigaScience.  ISSN 2047-217X. . doi: 10.1093/gigascience/gix032
  • Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Reinar, William Brynildsen; Grove, Harald; Miller, Jason R.; Walenz, Brian; Knight, James; Ekholm, Jenny M.; Peluso, Paul; Edvardsen, Rolf; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2017). An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics.  ISSN 1471-2164.  18:95, s 1- 23 . doi: 10.1186/s12864-016-3448-x Fulltekst i vitenarkiv
  • Wilson, Greg; Brian, Jennifer; Cranston, Karen; Kitzes, Justin; Nederbragt, Alexander Johan & Teal, Tracy K (2017). Good enough practices in scientific computing. PloS Computational Biology.  ISSN 1553-734X.  13(6) . doi: https://doi.org/10.1371/journal.pcbi.1005510
  • Frank, Jeremy A.; Pan, Yao; Tooming-Klunderud, Ave; Eijsink, Vincent; McHardy, Alice C; Nederbragt, Alexander Johan & Pope, Phillip (2016). Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports.  ISSN 2045-2322.  6 . doi: 10.1038/srep25373 Fulltekst i vitenarkiv
  • Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William & Davidson, William S (2016). The Atlantic salmon genome provides insights into rediploidization. Nature.  ISSN 0028-0836.  533(7602), s 200- 205 . doi: 10.1038/nature17164
  • Malmstrøm, Martin; Matschiner, Michael; Tørresen, Ole Kristian; Star, Bastiaan; Snipen, Lars-Gustav; Hansen, Thomas F; Baalsrud, Helle Tessand; Nederbragt, Alexander Johan; Hanel, Reinhold; Salzburger, Walter; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2016). Evolution of the immune system influences speciation rates in teleost fishes. Nature Genetics.  ISSN 1061-4036.  48(10), s 1204- 1210 . doi: 10.1038/ng.3645
  • Solbakken, Monica Hongrø; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Seppola, Marit; Gregers, Tone Fredsvik; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2016). Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions. Scientific Reports.  ISSN 2045-2322.  6 . doi: 10.1038/srep25211 Fulltekst i vitenarkiv
  • Star, Bastiaan; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd; Pampoulie, Christophe & Jentoft, Sissel (2016). Genomic characterization of the Atlantic cod sex-locus. Scientific Reports.  ISSN 2045-2322.  6, s 1- 9 . doi: 10.1038/srep31235
  • Tørresen, Ole Kristian; Rise, Matthew L.; Jin, Xingkun; Star, Bastiaan; MacKenzie, Simon; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan & Jentoft, Sissel (2016). An improved version of the Atlantic cod genome and advancements in functional genomics: implications for the future of cod farming, In Simon MacKenzie & Sissel Jentoft (ed.),  Genomics in Aquaculture.  Elsevier.  ISBN 9780128014189.  3.  s 45 - 72
  • Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2016). The new era of genome sequencing using high-throughput sequencing technology: Generation of the first version of the Atlantic cod genome, In Simon MacKenzie & Sissel Jentoft (ed.),  Genomics in Aquaculture.  Elsevier.  ISBN 9780128014189.  1.  s 1 - 20
  • Crusoe, Michael R.; Alameldin, Hussien F.; Awad, Sherine; Boucher, Elmar; Caldwell, Adam; Cartwright, Reed; Amanda, Charbonneau; Constantinides, Bede; Edvenson, Greg; Fay, Scott; Fenton, Jacob; Fenzl, Thomas; Fish, Jordan; Garcia-Gutierrez, Leonor; Garland, Phillip; Gluck, Jonathan; González, Iván; Guermond, Sarah; Guo, Jiarong; Gupta, Aditi; Herr, Joshua R.; Howe, Adina; Hyer, Alex; Härpfer, Alex; Irber, Luiz; Kidd, Rhys; Lin, David; Lippi, Justin; Mansour, Tamer; McA'Nulty, Pamela; McDonald, Eric; Mizzi, Jessica; Murray, Kevin D.; Nahum, Joshua R.; Nanlohy, Kaben; Nederbragt, Alexander Johan; Ortiz-Zuazaga, Humberto; Ory, Jeramia; Pell, Jason; Pepe-Ranney, Charles; Russ, Zachary N.; Schwarz, Erich; Scott, Camille; Seaman, Josiah; Sievert, Scott; Simpson, Jared; Skennerton, Connor T.; Spencer, James; Srinivasan, Ramakrishnan; Standage, Daniel; Stapleton, James A.; Steinman, Susan R.; Stein, Joe; Taylor, Benjamin; Trimble, Will; Wiencko, Heather L.; Wright, Michael; Wyss, Brian; Zhang, Qingpeng; zyme, en & Brown, C. Titus (2015). The khmer software package: enabling efficient nucleotide sequence analysis. F1000 Research.  ISSN 2046-1402.  s 1- 12 . doi: 10.12688/f1000research.6924.1
  • Brembu, Tore; Winge, Per; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd & Bones, Atle M. (2014). The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer. Marine Genomics.  ISSN 1874-7787.  16(1), s 17- 27 . doi: 10.1016/j.margen.2013.12.002
  • Hermansen, Jo Skeie; Haas, Fredrik; Trier, Cassandra Nicole; Bailey, Richard Ian; Nederbragt, Alexander Johan; Marzal, Alfonso & Sætre, Glenn-Peter (2014). Hybrid speciation through sorting of parental incompatibilities in Italian sparrows. Molecular Ecology.  ISSN 0962-1083.  23(23), s 5831- 5842 . doi: 10.1111/mec.12910
  • Siddiqui, Huma; Lagesen, Karin; Nederbragt, Alexander Johan; Eri, Lars Magne; Jeansson, Stig & Jakobsen, Kjetill Sigurd (2014). Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-Independent High Throughput Sequencing: A Case Report. Open Microbiology Journal.  ISSN 1874-2858.  8, s 148- 153 . doi: 10.2174/1874285801408010148
  • Star, Bastiaan; Nederbragt, Alexander Johan; Hansen, Marianne Helén Selander; Skage, Morten; Gilfillan, Gregor Duncan; Bradbury, Ian R.; Pampoulie, Christophe; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2014). Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA. PLoS ONE.  ISSN 1932-6203.  9(3) . doi: 10.1371/journal.pone.0089676 Fulltekst i vitenarkiv
  • Tooming-Klunderud, Ave; Sogge, Hanne; Rounge, Trine Ballestad; Nederbragt, Alexander Johan; Lagesen, Karin; Glöckner, Gernot; Hayes, Paul K; Rohrlack, Thomas & Jakobsen, Kjetill Sigurd (2013). From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between Planktothrix Strains. Applied and Environmental Microbiology.  ISSN 0099-2240.  79(21), s 6803- 6812 . doi: 10.1128/AEM.01455-13 Fulltekst i vitenarkiv
  • Espelund, Mari; Minge, Marianne Aastebøl; Gabrielsen, Tove M; Nederbragt, Alexander Johan; Shalchian-Tabrizi, Kamran; Otis, Christian; Turmel, Monique; Lemieux, Claude & Jakobsen, Kjetill Sigurd (2012). Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates. PLoS ONE.  ISSN 1932-6203.  7(6) . doi: 10.1371/journal.pone.0038809 Fulltekst i vitenarkiv
  • Logares, Ramiro; Haverkamp, Thomas Hendricus Augustus; Kumar, Surendra; Lanzén, Anders; Nederbragt, Alexander Johan; Quince, Christopher & Kauserud, Håvard (2012). Environmental microbiology through the lens of high-throughput DNA sequencing: Synopsis of current platforms and bioinformatics approaches. Journal of Microbiological Methods.  ISSN 0167-7012.  91(1), s 106- 113 . doi: 10.1016/j.mimet.2012.07.017
  • Siddiqui, Huma; Lagesen, Karin; Nederbragt, Alexander Johan; Jeansson, Stig & Jakobsen, Kjetill Sigurd (2012). Alterations of microbiota in urine from women with interstitial cystitis. BMC Microbiology.  ISSN 1471-2180.  12(205) . doi: 10.1186/1471-2180-12-205 Fulltekst i vitenarkiv
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Paulsen, Jonas; Solbakken, Monica Hongrø; Sharma, Animesh; Wetten, Ola Frang; Lanzén, Anders; Winer, Roger; Knight, James; Vogel, Jan-Hinnerk; Aken, Bronwen; Andersen, Øivind; Lagesen, Karin; Tooming-Klunderud, Ave; Edvardsen, Rolf; Kirubakaran, G. Tina; Espelund, Mari; Nepal, Chirag; Previti, A. Christopher; Karlsen, Bård Ove; Moum, Truls; Skage, Morten; Berg, Paul Ragnar; Gjøen, Tor; Kuhl, Heiner; Thorsen, Jim; Malde, Ketil; Reinhardt, Richard; Du, Lei; Johansen, Steinar Daae; Searle, Steve; Lien, Sigbjørn; Nilsen, Frank; Jonassen, Inge; Omholt, Stig W; Stenseth, Nils Christian & Jakobsen, Kjetill Sigurd (2011). The genome sequence of Atlantic cod reveals a unique immune system. Nature.  ISSN 0028-0836.  477(7363), s 207- 210 . doi: 10.1038/nature10342 Fulltekst i vitenarkiv
  • Brede, Dag Anders; Snipen, Lars-Gustav; Ussery, David Wayne; Nederbragt, Alexander Johan & Nes, Ingolf (2011). Complete Genome Sequence of the Commensal Enterococcus faecalis 62, Isolated from a Healthy Norwegian Infant. Journal of Bacteriology.  ISSN 0021-9193.  193(9), s 2377- 2378 . doi: 10.1128/JB.00183-11
  • Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave; Patil, Viswanath; Nederbragt, Alexander Johan; Otis, Christian; Turmel, Monique; Shalchian-Tabrizi, Kamran; Lemieux, Claude & Jakobsen, Kjetill Sigurd (2011). Genome Evolution of a Tertiary Dinoflagellate Plastid. PLoS ONE.  ISSN 1932-6203.  6(4), s e19132 . doi: 10.1371/journal.pone.0019132
  • Siddiqui, Huma; Nederbragt, Alexander Johan; Lagesen, Karin; Jeansson, Stig & Jakobsen, Kjetill Sigurd (2011). Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons. BMC Microbiology.  ISSN 1471-2180.  11 . doi: 10.1186/1471-2180-11-244
  • Løvoll, Marie Therese; Wiik-Nielsen, Jannicke; Sørensen, Søren Grove; Faller, Randi; Wiik-Nielsen, Christer R.; Kristoffersen, Anja Bråthen; Poppe, Trygve; Jung, J.; Jung, Joonil; Pedamallu, CS; Nederbragt, Alexander Johan; Sekhar Pedamallu, Chandra; Meyerson, M; Rimstad, Espen; Meyerson, Matthew & Tengs, Torstein (2010). A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS). Virology Journal.  ISSN 1743-422X.  7 . doi: 10.1186/1743-422X-7-309
  • Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Kausrud, Kyrre & Jakobsen, Kjetill Sigurd (2010). Identification and Quantification of Genomic Repeats and Sample Contamination in Assemblies of 454 Pyrosequencing Reads. Sequencing.  ISSN 2090-0325.  2010 . doi: 10.1155/2010/782465
  • Wetten, Ola Frang; Nederbragt, Alexander Johan; Wilson, Robert; Jakobsen, Kjetill Sigurd; Edvardsen, Rolf & Andersen, Øivind (2010). Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters. BMC Evolutionary Biology.  ISSN 1471-2148.  10 . doi: 10.1186/1471-2148-10-315
  • Johansen, Steinar; Coucheron, Dag-Hugo; Andreassen, morten; Karlsen, Bård Ove; Furmanek, T; Jorgensen, TE; Jørgensen, Tor Erik; Emblem, A; Emblem, Åse; Breines, Ragna; Nordeide, JT; Moum, Truls; Nederbragt, AJ; Stenseth, Nils Christian & Jakobsen, KS (2009). Large-scale sequence analyses of Atlantic cod. New Biotechnology.  ISSN 1871-6784.  25(5), s 263- 271 . doi: 10.1016/j.nbt.2009.03.014

Se alle arbeider i Cristin

  • Eide, Marta; Puntervoll, Pål; Lille-Langøy, Roger; Goldstone, Jared V.; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Rydbeck, Halfdan; Jakobsen, Kjetill Sigurd; Stegeman, John; Goksøyr, Anders & Karlsen, Odd Andre (2016). Chemical warfare in the marine environment: genomic survey of the Atlantic cod (Gadus morhua) defensome reveals the absence of an important xenosensor.
  • Nederbragt, Alexander Johan (2016). Doing bioinformatics: a user’s perspective .
  • Nederbragt, Alexander Johan (2016). Genomic variation detection in Atlantic cod using long reads .
  • Nederbragt, Alexander Johan (ed.) (2016). In between lines of code - a blog about biology, sequencing, bioinformatics and more.
  • Nederbragt, Alexander Johan (2016). SMRTwishes for SMRTsoftware for SMRTreads - a user’s perspective.
  • Nederbragt, Alexander Johan (2016). The new Atlantic cod reference genome.
  • Nederbragt, Alexander Johan & Lagesen, Karin (2016). The Carpentry effort at the University of Oslo.
  • Nederbragt, Alexander Johan (2015). A New, High Quality Reference Genome Assembly For Atlantic Cod.
  • Nederbragt, Alexander Johan (2015). Active learning strategies for bioinformatics teaching.
  • Nederbragt, Alexander Johan (2015). Bioinformatics breakout : Recent experiences from Oslo.
  • Nederbragt, Alexander Johan (ed.) (2015). In between lines of code - a blog about biology, sequencing, bioinformatics and more.
  • Nederbragt, Alexander Johan (2015). Local, central or cloud Why we chose to build our e-infrastructure for sequence analysis embedded in the university of Oslo HPC cluster.
  • Star, Bastiaan; Jentoft, Sissel; Matschiner, Michael; Nederbragt, Alexander Johan; Kjesbu, Olav Sigurd; Berg, Paul Ragnar; Bradbury, Ian R.; Pampoulie, Christophe; Hansen, Marianne Helén Selander; Skage, Morten; Jakobsen, Kjetill Sigurd & Stenseth, Nils Christian (2015). Does historic DNA provide genomic evidence for recent selection in Atlantic cod?.
  • Brynildsen, William; Tørresen, Ole Kristian; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2014). Genomic sequence repeats in fish genomes.
  • Matschiner, Michael; Star, Bastiaan; Berg, Paul Ragnar; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Hansen, Marianne Helén Selander; Skage, Morten; Kjesbu, Olav Sigurd; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd & Jentoft, Sissel (2014). Population differentiation and local adaptation in Atlantic cod.
  • Nederbragt, Alexander Johan (2014). Assembly – before and after .
  • Nederbragt, Alexander Johan (2014). Coding & Best Practice in Programming: Why it matters so much in the NGS era .
  • Nederbragt, Alexander Johan (ed.) (2014). In between lines of code - a blog about biology, sequencing, bioinformatics and more .
  • Nederbragt, Alexander Johan (2014). Mix and match: using multiple sequencing technologies and assemblers for the new Atlantic cod genome.
  • Nederbragt, Alexander Johan (2014). The why and how of long reads for de novo genome assembly.
  • Nederbragt, Alexander Johan (2014). The why and how of long reads for de novo genome assembly.
  • Nederbragt, Alexander Johan; Walenz, Brian; Tørresen, Ole Kristian; Jentoft, Sissel; Jakobsen, Kjetill Sigurd & Miller, Jason Rafe (2014). Towards correction-free assembly of raw PacBio reads .
  • Tørresen, Ole Kristian; Jentoft, Sissel; Star, Bastiaan; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2014). A new, high quality reference genome assembly for Atlantic cod.
  • Tørresen, Ole Kristian; Walenz, Brian; Grove, Harald; Lien, Sigbjørn; Knight, James; Star, Bastiaan; Lagesen, Karin; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Klunderud, Ave Tooming; Miller, Jason Rafe; Jentoft, Sissel; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2014). A new, high quality reference genome assembly for Atlantic cod.
  • Loman, N.; Hadfield, James & Nederbragt, Alexander Johan (2013). Seqbench: Open-source benchmarking of sequence platforms and software.
  • Nederbragt, Alexander Johan (2013). High Throughput Sequencing technologies.
  • Nederbragt, Alexander Johan (2013). High Throughput Sequencing technologies at the Norwegian Sequencing Centre with a focus on genome assembly.
  • Nederbragt, Alexander Johan (2013). Improving and validating the Atlantic Cod genome assembly using error-corrected as well as raw PacBio reads .
  • Nederbragt, Alexander Johan (2013). Lessons learned from assembling the Atlantic cod genome.
  • Nederbragt, Alexander Johan (2013). Repeat after me: Is our research reproducible (enough)?.
  • Nederbragt, Alexander Johan (2013). The IPython Notebook: an introduction, and hands-on/live demo.
  • Nederbragt, Alexander Johan (2013). The IPython Notebook: an introduction, and hands-on/live demo.
  • Nederbragt, Alexander Johan (2013). Using PacBio Reads to Improve and Validate the Assembly of the Complex Atlantic Cod Genome.
  • Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Miller, Jason Rafe; Walenz, Brian; Jentoft, Sissel & Jakobsen, Kjetill Sigurd (2013). Improving the Atlantic cod genome using long-read PacBio in combination with 454 and Illumina sequencing data.
  • Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Skage, Morten; Tooming-Klunderud, Ave; Hansen, Marianne Helén Selander; Jentoft, Sissel; Omholt, Stig W; Lien, Sigbjørn & Jakobsen, Kjetill Sigurd (2012). The long jump: Long distance mate pairs and long PacBio reads for the Salmon Genome Project.
  • Nederbragt, Alexander Johan (2012). A different kettle of fish entirely: bioinformatic challenges and solutions for whole de novo genome assembly of Atlantic cod and Atlantic salmon .
  • Nederbragt, Alexander Johan (2012). Experiences with Combining PacBio with Short Read Technology for Improved de novo Assembly of Complex Genomes.
  • Nederbragt, Alexander Johan (2012). Experiences with Combining PacBio with Short Read Technology for Improved de novo Assembly of Complex Genomes.
  • Nederbragt, Alexander Johan (2012). High-throughput sequencing og behovet for tungregneressurser.
  • Nederbragt, Alexander Johan (2012). How and why I use blogging and twitter for science.
  • Nederbragt, Alexander Johan (ed.) (2012). In between lines of code - a blog about biology, sequencing, bioinformatics and more .
  • Nederbragt, Alexander Johan (2012). New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond.
  • Nederbragt, Alexander Johan (2012). New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond.
  • Nederbragt, Alexander Johan (2012). The best of both worlds - Combining PacBio with short read technology for improved de novo genome assembly.
  • Nederbragt, Alexander Johan (2012). The bioinformatics of sequencing and assembling genomes - with a focus on the Atlantic cod and salmon genome projects.
  • Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Khelik, Ksenia; Lagesen, Karin; Rounge, Trine Ballestad; Star, Bastiaan; Tina, Kirubakaran G.; Berg, Paul Ragnar; Rognes, Torbjørn; Jentoft, Sissel; Winer, Roger; Dewar, Ken & Jakobsen, Kjetill Sigurd (2012). Challenges and Opportunities for Improving the Atlantic Cod Genome Assembly and Annotation.
  • Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Lagesen, Karin; Khelik, Ksenia; Rognes, Torbjørn; Jentoft, Sissel & Jakobsen, Kjetill Sigurd (2012). Improving the cod genome with the use of multi-platform sequencing data.
  • Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Solbakken, Monica Hongrø; Paulsen, Jonas; Lagesen, Karin; Tooming-Klunderud, Ave; Tina, Kirubakaran G.; Espelund, Mari; Skage, Morten; Berg, Paul Ragnar; Omholt, Stig W; Stenseth, Nils Christian & Jakobsen, Kjetill Sigurd (2011). The genome of Atlantic cod reveals a unique immune system.
  • Brembu, Tore; Winge, Per; Sparstad, Torfinn; Klunderud, Ave Tooming; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd & Bones, Atle M. (2011). Genomprosjektet på kiselalgen Seminavis robusta.
  • Brembu, Tore; Winge, Per; Sparstad, Torfinn; Klunderud, Ave Tooming; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd & Bones, Atle M. (2011). The Seminavis robusta genome project.
  • Løvoll, Marie Therese; Wiik-Nielsen, Jannicke; Grove, Søren; Wiik-Nielsen, Christer R.; Kristoffersen, Anja Bråthen; Jung, J.; Pedamallu, CS; Nederbragt, Alexander Johan; Meyerson, Matthew; Rimstad, Espen & Tengs, Torstein (2011). Totivirus og reovirus i laks med kardiomyopatisyndrom (CMS).
  • Nederbragt, Alexander Johan (2011). How to sequence a large eukaryotic genome and how we sequenced the cod genom.
  • Nederbragt, Alexander Johan (ed.) (2011). In between lines of code - a blog about biology, sequencing, bioinformatics and more .
  • Nederbragt, Alexander Johan (2011). Next generation sequencing: research opportunities and bioinformatic challenges.
  • Nederbragt, Alexander Johan; Lagesen, Karin & Malmstrøm, Martin (2011). Bioinformatic analysis of genomic data.
  • Rounge, Trine Ballestad & Nederbragt, Alexander Johan (2011). The Atlantic Cod Genome Project.
  • Nederbragt, Alexander Johan (ed.) (2010). An assembly of reads, contigs and scaffolds: a blog on all things newbler and beyond .
  • Nederbragt, Alexander Johan (2010). How you can use the GS FLX (454) for your project, and why it does not have to be very expensive.
  • Nederbragt, Alexander Johan (2010). Sekvensering, genotyping of bioinformatikk.
  • Nederbragt, Alexander Johan (2010). Sequencing the cod genome - with a focus on bioinformatic analyses.
  • Nederbragt, Alexander Johan (2010). The Norwegian High-Throughput Sequencing Centre - The 454 GS FLX node.
  • Nederbragt, Alexander Johan (2010). The Norwegian High-Throughput Sequencing Centre - The Illumina Genome Analyzer II (GAII) node.
  • Nederbragt, Alexander Johan (2010). The Norwegian Sequencing Centre at the University of Oslo and what it can do for the microbial science community at MatNat.
  • Nederbragt, Alexander Johan & Tooming-Klunderud, Ave (2010). From next generation reads to genomes: experiences gained from different genome projects.
  • Grimholt, Unni; Malmstrøm, Martin; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Jentoft, Sissel; Tooming-Klunderud, Ave; Star, Bastiaan; Skage, Morten; Gaup, Hege Junita & Jakobsen, Kjetill Sigurd (2009). The lack of cod MHC class II.
  • Grimholt, Unni; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Malmstrøm, Martin; Star, Bastiaan; Tooming-Klunderud, Ave; Skage, Morten; Jentoft, Sissel; Gaup, Hege Junita; Bakke, Hege; Solbakken, Monica Hongrø & Jakobsen, Kjetill Sigurd (2009). The cod genome project.
  • Jakobsen, Kjetill Sigurd; Rounge, Trine Ballestad; Nederbragt, Alexander Johan & Star, Bastiaan (2009). Sequencing of the cod genome: progress and perspectives.
  • Nederbragt, Alexander Johan (2009). High-Throughput Sequencing Services at the University of Oslo.
  • Nederbragt, Alexander Johan (2009). Overview of the cod assembly.
  • Nederbragt, Alexander Johan (2009). Processing high throughput sequence data from environmental samples using MEGAN.
  • Nederbragt, Alexander Johan (2009). The Cod Genome project.
  • Nederbragt, Alexander Johan (2009). The cod genome project.

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Publisert 3. nov. 2010 15:30 - Sist endret 16. feb. 2016 09:32