Kamran Shalchian-Tabrizi

Image of Kamran Shalchian-Tabrizi
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Phone +47 22857302
Mobile phone +47 41045328
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Visiting address Blindernveien 31 0371 Oslo
Postal address Postboks 1066 Blindern 0316 Oslo

Morphoplex research group

 

Our research interests cover:

Microbiome diversity and function: We study the diversity of microorganisms in plant roots and gut of animals to understand their functional role. We explore the unknown diversity of free-living enigmatic eukaryotes and unknown diversity of symbionts, resolve the evolutionary relationship between these organisms on various taxonomic level and to understand the processes that shaped this huge and ecologically important diversity. 

Developmental evolution in unicellular eukaryotes: The main scientific interest of the research group is to understand the morphology of unicellular eukarytoes (protists). We have recently taken the initiative to strengthen evodevo research at University of Oslo by establishing Centre for Epigenetics, Development and Evolution (CEDE). Morphoplex  focuses on understanding the molecular basis of morphological evolution among protists. 

Major transition in history of eukaryotes: We are interested to resolve the evolutionary relationship between major lineages of eukaryotes in order to infer the evolution of cell structures, organelles and genomes. Currently we are exploring the possibilities of using techniques for studying uncultivated eukaryote genomes and transcriptomes and relate the diversity of genes and genomes to the evolutionary history of these enigmatic eukaryote lineages and their ecological adaptations.

Regulatory RNA in unicellular eukaryotes: Of particular interest have been to understand the diversity of such regulatory elements among the large diversity of eukaryotes that traditionally have been regarded as non-model organisms, and to reveal the importance of such molecules in the evolution of cell differentiation and multicellularity among animals and fungi.

Development of Bioinformatics and computing resources: We have developed a web-based bioinformatics service named Bioportal, which now are transformed to Lifeportal. In addition, we have developed a number of different computer programs and pipelines for phylogenomics (the AIR and BIR pipelines), BLAST visualization (BLASTGrabber) and analyses of amplicon sequences (CLOTU).

Publications

  • Andresen, Ina J.; Orr, Russell John Scott; Shalchian-Tabrizi, Kamran & Bråte, Jon (2021). Compartmentalization of mRNAs in the giant, unicellular green alga Acetabularia acetabulum. Algal Research. ISSN 2211-9264. 59. doi: 10.1016/j.algal.2021.102440. Full text in Research Archive
  • Andresen, Ina Jungersen; Orr, Russell John Scott; Krabberød, Anders Kristian; Shalchian-Tabrizi, Kamran & Bråte, Jon (2021). Genome sequencing and de novo assembly of the giant unicellular alga Acetabularia acetabulum using droplet MDA. Scientific Reports. ISSN 2045-2322. 11. doi: 10.1038/s41598-021-92092-4. Full text in Research Archive
  • Gulbrandsen, Øyvind Sætren; Andresen, Ina Jungersen; Krabberød, Anders Kristian; Bråte, Jon & Shalchian-Tabrizi, Kamran (2021). Phylogenomic analysis restructures the Ulvophyceae. Journal of Phycology. ISSN 0022-3646. 57(4), p. 1223–1233. doi: 10.1111/jpy.13168. Full text in Research Archive
  • Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Haraldsen, Arthur Alexander Blørstad; Tarver, James E. & Suga, Hiroshi [Show all 11 contributors for this article] (2018). Unicellular origin of the animal microRNA machinery. Current Biology. ISSN 0960-9822. 28(20), p. 3288–3295.e5. doi: 10.1016/j.cub.2018.08.018. Full text in Research Archive
  • Orr, Russell; Zhao, Sen; Klaveness, Dag; Yabuki, Akinori; Ikeda, Keiji & Makoto, Watanabe M. (2018). Enigmatic diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evolutionary Biology. ISSN 1471-2148. 18(115), p. 1–13. doi: 10.1186/s12862-018-1224-z. Full text in Research Archive
  • Freeman, Mark A.; Fuss, Janina; Kristmundsson, Árni; Bjorbækmo, Marit Fredrikke Markussen; Mangot, Jean-Francois & del Campo, Javier [Show all 9 contributors for this article] (2017). X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates. Current Biology. ISSN 0960-9822. 27(11), p. 1645–1651. doi: 10.1016/j.cub.2017.04.045.
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Draft genome sequences of two unclassified bacteria, Hydrogenophaga sp. strains IBVHS1 and IBVHS2, isolated from environmental samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(34). doi: 10.1128/genomeA.00884-17.
  • Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves & Rombauts, S (2017). Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(34). doi: 10.1128/genomeA.00894-17.
  • Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves & Rombauts, S (2017). Draft genome Sequences of two Unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, Isolated from Environmental Samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. doi: 10.1128/genomeA.00787-17.
  • Krabberød, Anders Kristian; Bjorbækmo, Marit Markussen; Shalchian-Tabrizi, Kamran & Logares, Ramiro (2017). Exploring the oceanic microeukaryotic interactome with metaomics approaches. Aquatic Microbial Ecology. ISSN 0948-3055. 79(1), p. 1–12. doi: 10.3354/ame01811.
  • Krabberød, Anders Kristian; Orr, Russell; Bråte, Jon; Kristensen, Tom; Bjørklund, Kjell Rasmus & Shalchian-Tabrizi, Kamran (2017). Single cell transcriptomics, mega-phylogeny and the genetic basis of morphological innovations in Rhizaria. Molecular Biology and Evolution (MBE). ISSN 0737-4038. doi: 10.1093/molbev/msx075.
  • Forster, Dominik; Dunthorn, Micah; Mahé, Frédéric; Dolan, John R.; Audic, Stéphane & Bass, David [Show all 35 contributors for this article] (2016). Benthic protists: The under-charted majority. FEMS Microbiology Ecology. ISSN 0168-6496. 92(8), p. 1–11. doi: 10.1093/femsec/fiw120.
  • Massana, Ramon; Gobet, Angelique; Audic, Stéphane; Bass, David; Bittner, Lucie & Boutte, Christophe [Show all 35 contributors for this article] (2015). Marine protist diversity in European coastal watersand sediments as revealed by high-throughputsequencing. Environmental Microbiology. ISSN 1462-2912. 17(10), p. 4035–4049. doi: 10.1111/1462-2920.12955.
  • Bråte, Jon; Adamski, Marcin; Neumann, Ralf Stefan; Shalchian-Tabrizi, Kamran & Adamska, Maja (2015). Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proceedings of the Royal Society of London. Biological Sciences. ISSN 0962-8452. 282(1821), p. 1–9. doi: 10.1098/rspb.2015.1746. Full text in Research Archive
  • Kumar, Surendra; Krabberød, Anders Kristian; Neumann, Ralf Stefan; Michalickova, Katerina; Zhao, Sen & Zhang, Xiaoli [Show all 7 contributors for this article] (2015). BIR pipeline for preparation of phylogenomic data. Evolutionary Bioinformatics. ISSN 1176-9343. 11, p. 79–83. doi: 10.4137/EBO.S10189.
  • Logares, Ramiro; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe & Christen, Richard [Show all 29 contributors for this article] (2014). Patterns of Rare and Abundant Marine Microbial Eukaryotes. Current Biology. ISSN 0960-9822. 24(8), p. 813–821. doi: 10.1016/j.cub.2014.02.050.
  • Neumann, Ralf Stefan; Kumar, Surendra; Haverkamp, Thomas Hendricus Augustus & Shalchian-Tabrizi, Kamran (2014). BLASTGrabber: A bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data. BMC Bioinformatics. ISSN 1471-2105. 15(128). doi: 10.1186/1471-2105-15-128. Full text in Research Archive
  • Neumann, Ralf Stefan; Kumar, Surendra & Shalchian-Tabrizi, Kamran (2014). BLAST output visualization in the new sequencing era. Briefings in Bioinformatics. ISSN 1467-5463. 15(4), p. 484–503. doi: 10.1093/bib/bbt009.
  • Liang, Zhe; Demko, Viktor; Wilson, Robert Charles; Johnson, Kenneth; Ahmad, Rafi & Perroud, Pierre-Francois [Show all 12 contributors for this article] (2013). The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. The Plant Journal. ISSN 0960-7412. 75(5), p. 742–754. doi: 10.1111/tpj.12235.
  • Zhao, Sen; Shalchian-Tabrizi, Kamran & Klaveness, Dag (2013). Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics. Molecular Phylogenetics and Evolution. ISSN 1055-7903. 69(3), p. 462–468. doi: 10.1016/j.ympev.2013.08.005.
  • Zhao, Sen; Liang, Zhe; Demko, Viktor; Wilson, Robert; Johansen, Wenche & Olsen, Odd-Arne [Show all 7 contributors for this article] (2012). Massive expansion of the calpain gene family in unicellular eukaryotes. BMC Evolutionary Biology. ISSN 1471-2148. 12(193). doi: 10.1186/1471-2148-12-193.
  • Espelund, Mari; Minge, Marianne Aastebøl; Gabrielsen, Tove M; Nederbragt, Alexander Johan; Shalchian-Tabrizi, Kamran & Otis, Christian [Show all 9 contributors for this article] (2012). Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates. PLOS ONE. ISSN 1932-6203. 7(6). doi: 10.1371/journal.pone.0038809. Full text in Research Archive
  • Suga, Hiroshi; Dacre, Michael; de Mendoza, Alex; Shalchian-Tabrizi, Kamran; Manning, G & Ruiz-Trillo, Iñaki (2012). Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases. Science Signaling. ISSN 1945-0877. 5(222). doi: 10.1126/scisignal.2002733.
  • Bråte, Jon; Krabberød, Anders Kristian; Dolven, Jane Karine Lønne; Ose, Randi Frida; Kristensen, Tom & Bjørklund, Kjell Rasmus [Show all 7 contributors for this article] (2012). Radiolaria Associated with Large Diversity of Marine Alveolates. Protist. ISSN 1434-4610. 163(5), p. 767–777. doi: 10.1016/j.protis.2012.04.004.
  • Zhao, Sen; Burki, Fabien; Bråte, Jon; Keeling, Patrick J; Klaveness, Dag & Shalchian-Tabrizi, Kamran (2012). Collodictyon - An Ancient Lineage in the Tree of Eukaryotes. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 29(6), p. 1557–1568. doi: 10.1093/molbev/mss001.
  • Torruella, Guifré; Derelle, Romain; Paps, Jordi; Lang, B. Franz; Roger, Andrew J. & Shalchian-Tabrizi, Kamran [Show all 7 contributors for this article] (2012). Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 29(2), p. 531–544. doi: 10.1093/molbev/msr185.
  • Klaveness, Dag; Bråte, Jon; Patil, Viswanath; Shalchian-Tabrizi, Kamran; Kluge, Ragnhild & Gislerød, Hans Ragnar [Show all 7 contributors for this article] (2011). The 18S and 28S rDNA indentity and phylogeny of the common lotic chrysophyte Hydrurus foetidus. European journal of phycology. ISSN 0967-0262. 46(3), p. 282–291. doi: 10.1080/09670262.2011.598950.
  • Krabberød, Anders Kristian; Bråte, Jon; Dolven, Jane Karine Lønne; Ose, Randi Frida; Klaveness, Dag & Kristensen, Tom [Show all 8 contributors for this article] (2011). Radiolaria Divided into Polycystina and Spasmaria in Combined 18S and 28S rDNA Phylogeny. PLOS ONE. ISSN 1932-6203. 6(8). doi: 10.1371/journal.pone.0023526.
  • Kumar, Surendra; Carlsen, Tor; Mevik, Bjørn-Helge; Enger, Pål; Blaalid, Rakel & Shalchian-Tabrizi, Kamran [Show all 7 contributors for this article] (2011). CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. BMC Bioinformatics. ISSN 1471-2105. 12. doi: 10.1186/1471-2105-12-182. Full text in Research Archive
  • Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave ; Patil, Viswanath & Nederbragt, Alexander Johan [Show all 11 contributors for this article] (2011). Genome Evolution of a Tertiary Dinoflagellate Plastid. PLOS ONE. ISSN 1932-6203. 6(4). doi: 10.1371/journal.pone.0019132.
  • Shalchian-Tabrizi, Kamran; Røberg, Kjetil; Ree, Dan Kristofer; Klaveness, Dag & Bråte, Jon (2011). Marine-Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences. Journal of Eukaryotic Microbiology. ISSN 1066-5234. 58(4), p. 315–318. doi: 10.1111/j.1550-7408.2011.00547.x.
  • Bråte, Jon; Klaveness, Dag; Rygh, T; Jakobsen, Kjetill Sigurd & Shalchian-Tabrizi, Kamran (2010). Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations. BMC Microbiology. ISSN 1471-2180. 10(168). doi: 10.1186/1471-2180-10-168.
  • Logares, Ramiro; Bråte, Jon; Heinrich, F; Shalchian-Tabrizi, Kamran & Bertilsson, Stefan (2010). Infrequent Transitions between Saline and Fresh Waters in One of the Most Abundant Microbial Lineages (SAR11). Molecular Biology and Evolution (MBE). ISSN 0737-4038. 27(2), p. 347–357. doi: 10.1093/molbev/msp239.
  • Minge, Marianne Aastebøl; Shalchian-Tabrizi, Kamran; Tørresen, Ole Kristian; Takishita, Kiyotaka; Probert, Ian & Inagaki, Yuji [Show all 8 contributors for this article] (2010). A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum. BMC Evolutionary Biology. ISSN 1471-2148. 10. doi: 10.1186/1471-2148-10-191. Full text in Research Archive
  • Bråte, Jon; Logares, Ramiro; Berney, Cedric; Ree, Dan Kristofer; Klaveness, Dag & Jakobsen, Kjetill Sigurd [Show all 7 contributors for this article] (2010). Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. The ISME Journal. ISSN 1751-7362. 4(9), p. 1144–1153. doi: 10.1038/ismej.2010.39.
  • Logares, Ramiro; Bråte, Jon; Bertilsson, Stefan; Clasen, Jessica L; Shalchian-Tabrizi, Kamran & Rengefors, Karin (2009). Infrequent marine-freshwater transitions in the microbial world. Trends in Microbiology. ISSN 0966-842X. 17(9), p. 414–422. doi: 10.1016/j.tim.2009.05.010.
  • Minge, Marianne Aastebøl; Silberman, Jeffrey; Orr, Russell; Cavalier-Smith, Thomas; Shalchian-Tabrizi, Kamran & Burki, Fabien [Show all 7 contributors for this article] (2009). Evolutionary position of breviate amoebae and the primary eukaryote divergence. Proceedings of the Royal Society of London. Biological Sciences. ISSN 0962-8452. 276(1657), p. 597–604. doi: 10.1098/rspb.2008.1358.
  • Riisberg, Ingvild; Orr, Russell; Kluge, Ragnhild; Shalchian-Tabrizi, Kamran; Bowers, HA & Vishwanath, Patil [Show all 7 contributors for this article] (2009). Seven Gene Phylogeny of Heterokonts. Protist. ISSN 1434-4610. 160(2), p. 191–204. doi: 10.1016/j.protis.2008.11.004.
  • Kumar, Surendra; Skjæveland, Åsmund; Orr, Russell; Enger, Pål; Ruden, Torgeir Andersen & Mevik, Bjørn-Helge [Show all 8 contributors for this article] (2009). AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses. BMC Bioinformatics. ISSN 1471-2105. 10. doi: 10.1186/1471-2105-10-357. Full text in Research Archive
  • Logares, Ramiro; Bråte, Jon; Friederike, Heinrich; Shalchian-Tabrizi, Kamran & Bertilsson, Stefan (2009). Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11). Molecular Biology and Evolution (MBE). ISSN 0737-4038. doi: 10.1093/molbev/msp239.
  • Burki, Fabien; Inagaki, Yuji; Bråte, Jon; Archibald, John M; Keeling, Patrick J & Cavalier-Smith, Thomas [Show all 14 contributors for this article] (2009). Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates. Genome Biology and Evolution (GBE). ISSN 1759-6653. 1(1), p. 231–238. doi: 10.1093/gbe/evp022.
  • Vishwanath, Patil; Bråte, Jon; Shalchian-Tabrizi, Kamran & Jakobsen, Kjetill Sigurd (2009). Revisiting the Phylogenetic Position of Synchroma grande. Journal of Eukaryotic Microbiology. ISSN 1066-5234. 56(4), p. 394–396.
  • Burki, F; Shalchian-Tabrizi, Kamran & Pawlowski, J (2008). Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biology Letters. ISSN 1744-9561. 4, p. 366–369. doi: 10.1098/rsbl.2008.0224.
  • Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Espelund, Mari; Orr, Russell; Ruden, Torgeir Andersen & Jakobsen, Kjetill Sigurd (2008). Multigene Phylogeny of Choanozoa and the Origin of Animals. PLOS ONE. ISSN 1932-6203. 3(5).
  • Shalchian-Tabrizi, Kamran; Bråte, Jon; Logares, R; Klaveness, Dag; Berney, Cedrik & Jakobsen, Kjetill Sigurd (2008). Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny. Environmental Microbiology. ISSN 1462-2912. 10(10), p. 2635–2644. doi: 10.1111/j.1462-2920.2008.01685.x.
  • Tooming-Klunderud, Ave ; Rohrlack, Thomas; Shalchian-Tabrizi, Kamran; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2007). Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins. Microbiology (Reading). ISSN 1350-0872. 153(5), p. 1382–1393. doi: 10.1099/mic.0.2006/001123-0.
  • Stensrud, Øyvind; Schumacher, Trond; Shalchian-Tabrizi, Kamran; Svegården, Ingeborg Bjorvand & Kauserud, Håvard (2007). Accelerated nrDNA evolution and profound AT bias in the medicinal fungus Cordyceps sinensis. Mycological Research. ISSN 0953-7562. 111(4), p. 409–415. doi: 10.1016/j.mycres.2007.01.015.
  • Shalchian-Tabrizi, Kamran; Kauserud, Håvard; Massana, R; Klaveness, Dag & Jakobsen, Kjetill Sigurd (2007). Analysis of environmental 18S ribosomal RNA sequences reveals unknown diversity of the cosmopolitan phylum Telonemia. Protist. ISSN 1434-4610. 158, p. 173–180. doi: 10.1016/j.protis.2006.10.003.
  • Logares, Ramiro; Rengefors, Karin; Kremp, Anke; Shalchian-Tabrizi, Kamran; Boltovskoy, Andrés & Tengs, Torstein [Show all 8 contributors for this article] (2007). Phenotypically different microalgal morphospecies with identical ribosomal DNA: A case of rapid adaptive evolution? Microbial Ecology. ISSN 0095-3628. 53, p. 549–561. doi: 10.1007/s00248-006-9088-y.
  • Edvardsen, B; Eikrem, W; Shalchian-Tabrizi, K; Riisberg, I; Johnsen, Geir & Naustvoll, L [Show all 7 contributors for this article] (2007). Verrucophora farcimen gen. et sp nov (Dictyochophyceae, Heterokonta) - A bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway. Journal of Phycology. ISSN 0022-3646. 43, p. 1054–1070. doi: 10.1111/j.1529-8817.2007.00390.x.
  • Burki, Fabien; Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Skjæveland, Åsmund; Nikolajev, Sergey I & Jakobsen, Kjetill Sigurd [Show all 7 contributors for this article] (2007). Phylogenomics Reshuffles the Eukaryotic Supergroups. PLOS ONE. ISSN 1932-6203. 2(8). doi: 10.1371/journal.pone.0000790.
  • Kauserud, Håvard; Shalchian-Tabrizi, Kamran & DeCock, Cony (2007). Multi-locus sequencing reveals multiple geographically structured lineages of Coniophora arida and C. olivacea (Boletales) in North America. Mycologia. ISSN 0027-5514. 99, p. 705–713.
  • Logares, Ramiro; Shalchian-Tabrizi, Kamran; Boltovskoy, Andrés & Rengefors, Karin (2007). Extensive dinoflagellate phylogenies indicate infrequent and usually not recent marine-freshwater transitions. Molecular Phylogenetics and Evolution. ISSN 1055-7903. 45, p. 887–903. doi: 10.1016/j.ympev.2007.08.005.
  • Kauserud, Håvard; Stensrud, Øyvind; DeCock, Cony; Shalchian-Tabrizi, Kamran & Schumacher, Trond (2006). Multiple gene genealogies and AFLPs suggest cryptic speciation and long-distance dispersal in the basidiomycete Serpula himantioides (Boletales). Molecular Ecology. ISSN 0962-1083. 15(2), p. 421–431. doi: 10.1111/j.1365-294X.2005.02768.
  • Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Cavalier-Smith, Thomas; Nedreklepp, Joachim; Klaveness, Dag & Jakobsen, Kjetill Sigurd (2006). Combined Heat Shock Protein 90 and Ribosomal RNA Sequence Phylogeny Supports Multiple Replacements of Dinoflagellate Plastids. Journal of Eukaryotic Microbiology. ISSN 1066-5234. 53(3), p. 217–224.
  • Shalchian-Tabrizi, Kamran; Eikrem, Wenche; Klaveness, Dag; Vaulot, Daniel; Minge, Marianne Aastebøl & LeGall, F [Show all 12 contributors for this article] (2006). Telonemia, a new protist phylum with affinity to chromist lineages. Proceedings of the Royal Society of London. Biological Sciences. ISSN 0962-8452. 273, p. 1833–1842. doi: 10.1098/rspb.2006.3515.
  • Shalchian-Tabrizi, Kamran; Skånseng, Marianne; Ronqvist, Fredrik; Klaveness, Dag; Bachvaroff, Tsvetan R & Delwiche, Charles F. [Show all 9 contributors for this article] (2006). Heterotachy Processes in Rhodophyte-Derived Secondhand Plastid Genes: Implications for Addressing the Origin and Evolution of Dinoflagellate Plastids. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 23, p. 1504–1515. doi: 10.1093/molbev/msl011.

View all works in Cristin

  • Spilde, Ingrid; Bråte, Jon & Shalchian-Tabrizi, Kamran (2019). Knøttlite mysterium: Hva er egentlig forskjellen på deg og en encellet skapning? [Business/trade/industry journal]. Forskning.no.
  • Orr, Russell John Scott; Zhao, Sen; Klaveness, Dag; Yabuki, Akinori; Ikeda, Keiji & Watanabe, Makoto M. (2018). Correction to: Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evolutionary Biology. ISSN 1471-2148. 18(1). doi: 10.1186/s12862-018-1233-y.
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Erratum: "Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples" [Genome Announc, 5, 33, (2017), (e00787-17)] DOI:10.1128/genomeA.00787-17. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(41:e01152-17), p. 1–1. doi: 10.1128/genomeA.01152-17.
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(33), p. 1–3. doi: 10.1128/genomeA.00787-17.
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Draft genome sequences of two unclassified bacteria, Sphingomonas sp. strains IBVSS1 and IBVSS2, isolated from environmental samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5:e00894-17(34), p. 1–3. doi: 10.1128/genomeA.00894-17.
  • Orr, Russell; Rombauts, S; Van De Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Erratum to "Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples" [Genome Announc., 2017, 5 (34):e00894-17.] Doi: 10.1128/genomeA.00894-17. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(41). doi: 10.1128/genomeA.01175-17.
  • Evenstad, Andreas; Lieblein Røsæg, Line; Andresen, Ina Jungersen; Shalchian-Tabrizi, Kamran & Bråte, Jon (2016). Evolution of non-coding RNAs in ctenophores.
  • Lieblein Røsæg, Line; Evenstad, Andreas; Andresen, Ina Jungersen; Bråte, Jon & Shalchian-Tabrizi, Kamran (2016). Postembryonic development of Mnemiopsis leidyi inferred from gene expression data.
  • Haraldsen, Arthur Alexander Blørstad; Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Grini, Paul Eivind & Shalchian-Tabrizi, Kamran (2016). Pre-metazoan origin of animal microRNAs.
  • Orr, Russell; Zhao, Sen; Yabuki, Akinori & Shalchian-Tabrizi, Kamran (2016). PacBio sequencing reveals the diversity and ecology of a deeply diverging eukaryote lineage.
  • Haraldsen, Arthur Alexander Blørstad; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois; Fuss, Janina; Shalchian-Tabrizi, Kamran & Hansen, Haakon [Show all 7 contributors for this article] (2015). Protist diversity in a marine and lacustrine system: Patterns across a salinity gradient.
  • Fuss, Janina; Grønneberg, Estelle; Gylt, Torbjørn; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois & Shalchian-Tabrizi, Kamran [Show all 7 contributors for this article] (2015). Pee, poo and parasitic protists - what is living inside the fish we eat?
  • Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad & Shalchian-Tabrizi, Kamran (2015). Expanding our knowledge about parasites using PATHOS-DB (The PArasiTe–HOSt-DataBase).
  • Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad & Shalchian-Tabrizi, Kamran (2015). HIDDEN PROTIST PARASITES: HOW CAN THEY BE DETECTED?
  • Fuss, Janina; Mangot, Jean-Francois; Bjorbækmo, Marit Markussen; Freeman, Mark A.; Bass, David & Shalchian-Tabrizi, Kamran [Show all 7 contributors for this article] (2015). THE ENIGMATIC BASAL ALVEOLATE PARASITE X-CELL: CAN MULTIPLE GENOMIC APPROACHES REVEAL MORE?
  • Enevoldsen, Emily; Liow, Lee Hsiang; Voje, Kjetil L.; Orr, Russell; Shalchian-Tabrizi, Kamran & Krabberød, Anders Kristian (2014). Macroevolution through molecular and morphological lenses: a history of microporellids.
  • Demko, Viktor; Johansen, Wenche; Perroud, Pierre-francois; Liang, Zhe; Shalchian-Tabrizi, Kamran & Zhao, Sen [Show all 9 contributors for this article] (2013). The evolutionary history of eukaryotic calpains displays multiple variants of regulatory mechanisms for CysPc activity.
  • Tidemann, Grethe; Shalchian-Tabrizi, Kamran; Vrålstad, Trude & Carlsen, Tor (2012). Hvordan skape et toppforskningsmiljø på under fem år. [Newspaper]. Uniforum.
  • Demko, Viktor; Ako, Ako Eugene; Perroud, Pierre-Francois; Liang, Zhe; Johansen, Wenche & Wilson, Robert [Show all 10 contributors for this article] (2012). Searching for cellular targets of the plant calpain DEK1.
  • Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert; Shalchian-Tabrizi, Kamran & Johansen, Wenche [Show all 7 contributors for this article] (2012). The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants.
  • Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert Charles; Shalchian-Tabrizi, Kamran & Olsen, Odd-Arne [Show all 7 contributors for this article] (2011). The calpain module of the DEK1 protein from the moss Physcomitrella functionally complements the Arabidopsis dek1-3 mutant.
  • Demko, Viktor; Perroud, Pierre-Francois; Johansen, Wenche; Wilson, Robert Charles; Liang, Zhe & Shalchian-Tabrizi, Kamran [Show all 7 contributors for this article] (2011). The DEK1 and CRINKLY4 proteins play a fundamental role in the development of land plants - from Arabidopsis back to the moss Physcomitrella patens.
  • Johansen, Wenche; Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert Charles & Shalchian-Tabrizi, Kamran [Show all 7 contributors for this article] (2011). Dek1 calpain evolution.
  • Perroud, Pierre-Francois; Wilson, Robert Charles; Demko, Viktor; Liang, Zhe; Johansen, Wenche & Shalchian-Tabrizi, Kamran [Show all 9 contributors for this article] (2011). Multiple roles for DEK1 in Physcomitrella patens.
  • Olsen, Odd-Arne; Johansen, Wenche; Emilsen, Sidsel; Belova, Tatiana; Liang, Zhe & Smalås, Arne [Show all 17 contributors for this article] (2010). Structural & functional significance of the DEK1 phytocalpain during land plant evolution from green algae.
  • Wilson, Robert; Perroud, Pierre-Francois; Johansen, Wenche; Liang, Zhe; Belova, Tatiana & Lorentzen, Marit [Show all 14 contributors for this article] (2010). Was the transmembrane-anchored DEK1 calpain key to the development of differentiated multicellular land plants?
  • Dittami, Simon; Riisberg, Ingvild; John, Uwe; Orr, Russell; Shalchian-Tabrizi, Kamran & Jakobsen, Kjetill Sigurd (2010). Analysis of expressed sequence tags from the ichtyotoxic dictyochophyte Pseudochattonella farcimen.
  • Bråte, Jon; Krabberød, Anders Kristian; Dolven, Jane Karine Lønne; Ose, Randi Frida; Kristensen, Tom & Bjørklund, Kjell Rasmus [Show all 7 contributors for this article] (2010). Diversity of unculturable Radiolaria and their symbionts revealed by 18S rDNA phylogeny.
  • Dolven, Jane Karine Lønne; Bjørklund, Kjell Rasmus; Bråte, Jon; Krabberød, Anders Kristian; Klaveness, Dag & Shalchian-Tabrizi, Kamran (2009). Polycystina. Polycystine radiolarians.
  • Shalchian-Tabrizi, Kamran (2009). Bioportal Bioinformatics Service.
  • Shalchian-Tabrizi, Kamran (2008). Dyrenes opprinnelse. [Internet]. Forskning.no.
  • Shalchian-Tabrizi, Kamran (2008). Ein portal å rekna med. [Newspaper]. Uniforum, UiO.
  • Shalchian-Tabrizi, Kamran (2008). EVOLUTION: Building the Tree of Life, Genome by Genome. [Newspaper]. Science Magazine.
  • Shalchian-Tabrizi, Kamran (2008). Telonemia - origin and diversity.
  • Shalchian-Tabrizi, Kamran (2008). Phylogenomic analyses of the Tree Of Life, with focus on Telonemia.
  • Shalchian-Tabrizi, Kamran (2008). Cross-colonisation of marine and freshwater in Telonemia, cryptomonads and Perkinsea.
  • Minge, Marianne Aastebøl; Shalchian-Tabrizi, Kamran & Jakobsen, Kjetill Sigurd (2008). Chimeric proteomes: The plastid evolution of the green dinoflagellate Lepidodinium chlorophorum.
  • Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Espelund, Mari; Orr, Russell; Ruden, Torgeir A. & Jakobsen, Kjetill Sigurd (2008). The Choanozoan Ministeria vibrans: Multigene Phylogeny and the Origin of Animals.
  • Patil, Vishwanath; Bråte, Jon; Klaveness, Dag; Kluge, Ragnhild; Shalchian-Tabrizi, Kamran & Gislerød, Hans Ragnar [Show all 7 contributors for this article] (2008). Molecular phylogeny of Hydrurus, a fresh water chrysophyte rich in lipids.
  • Minge, Marianne Aastebøl; Silberman, Jeffrey; Orr, Russell; Cavalier-Smith, Thomas; Shalchian-Tabrizi, Kamran & Burki, Fabien [Show all 7 contributors for this article] (2008). Breviata anathema - an unusual Amoebozoa.
  • Shalchian-Tabrizi, Kamran (2007). Livets tre har mistet en gren. [Newspaper]. Apollon.
  • Shalchian-Tabrizi, Kamran (2007). Brukarforum for bioinformatikk på Blindern. [Newspaper]. IT-avisa, UiO.
  • Liang, Zhe; Olsen, Odd-Arne; Shalchian-Tabrizi, Kamran; Wilson, Robert & Johansen, Wenche (2012). The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants. Norwegian University of Life Sciences. ISSN 978-82-575-1083-1.

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Published Nov. 3, 2010 3:32 PM - Last modified Nov. 1, 2021 12:46 PM