Kamran Shalchian-Tabrizi

Bilde av Kamran Shalchian-Tabrizi
English version of this page
Telefon +47 22857302
Mobiltelefon +47 41045328
Brukernavn
Besøksadresse Blindernveien 31 0371 Oslo
Postadresse Postboks 1066 Blindern 0316 Oslo

Faglige interesser

Mine hovedinteresser er studier av store transisjoner for eukaryote organismer i historien. Jeg er hovedsakelig interessert i å forstå evolusjonære slektskap mellom de store linjene av eukaryoter for økt forståelse av evolusjon av cellesturkturer, organeller og genomer. For tiden undersøker jeg muligheter for å studere eukaryote genomer og transkriptomer uten å behøve en kultur av organismene, og relatere diversiteten av gener og genomer til den evolusjonære historien til disse gåtefulle eukaryote slektene og deres økologiske tilpassninger.

Undervisning

Bakgrunn

Utdannelse:

  • 2003 Dr. scient., Molekylærevolusjon og fylogeni, Biologisk Institutt, UiO
  • 1999 Cand. scient. biologi, Seksjon for generell genetikk, Biologisk Institutt, UiO
  • 1995 Cand. mag., biologi, Biologisk Institutt, UiO

 Tidligere akademiske stillinger:

  • 2004-2006 Post doc. ved UiO og University of Oxford, England

Priser

  • 2010 Darwin prisen ved UiO

Verv

  • Leder for Microbial Evolution Research Group (MERG)
  • Startet utviklingen av Bioportal bioinformatisk webservice, og er for tiden leder for utvikling av tjenesten
  • Rewiever av artikler i:
    • Molecular Biology and Evolution
    • Systematic Biology
    • BMC microbiology
    • Journal of Phycology
    • Gene
    • Protists
    • Journal of Eukaryote Microbiology
    • Molecular Phylogenetics and Evolution

Samarbeid

Jeg samarbeider med flere personer både nasjonalt og internasjonalt. Mine samarbeidspartnere er å finne ved følgende institusjoner:

Nasjonale:

  • Flere samarbeidspartnere ved UiO og MERG
  • Universitetet for miljø- og biovitenskap (UMB)

Internasjonale:

  • University of Lund, Sverige
  • Natural History Museum, London, England
  • Laval University, Quebec, Canada
  • University of British Columbia, Canada
  • University of Geneva, Sveits
  • Dalhousie University, Halifax, Canada
  • Institute of Marine Sciences, Barcelona, Spain
  • University of Barcelona, Spain
  • University of Oxford, England
  • University of Tsukuba, Japan

 

Emneord: Life sciences

Publikasjoner

  • Andresen, Ina J.; Orr, Russell John Scott; Shalchian-Tabrizi, Kamran & Bråte, Jon (2021). Compartmentalization of mRNAs in the giant, unicellular green alga Acetabularia acetabulum. Algal Research. ISSN 2211-9264. 59. doi: 10.1016/j.algal.2021.102440. Fulltekst i vitenarkiv
  • Andresen, Ina Jungersen; Orr, Russell John Scott; Krabberød, Anders Kristian; Shalchian-Tabrizi, Kamran & Bråte, Jon (2021). Genome sequencing and de novo assembly of the giant unicellular alga Acetabularia acetabulum using droplet MDA. Scientific Reports. ISSN 2045-2322. 11. doi: 10.1038/s41598-021-92092-4. Fulltekst i vitenarkiv
  • Gulbrandsen, Øyvind Sætren; Andresen, Ina Jungersen; Krabberød, Anders Kristian; Bråte, Jon & Shalchian-Tabrizi, Kamran (2021). Phylogenomic analysis restructures the Ulvophyceae. Journal of Phycology. ISSN 0022-3646. 57(4), s. 1223–1233. doi: 10.1111/jpy.13168. Fulltekst i vitenarkiv
  • Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Haraldsen, Arthur Alexander Blørstad; Tarver, James E. & Suga, Hiroshi [Vis alle 11 forfattere av denne artikkelen] (2018). Unicellular origin of the animal microRNA machinery. Current Biology. ISSN 0960-9822. 28(20), s. 3288–3295.e5. doi: 10.1016/j.cub.2018.08.018. Fulltekst i vitenarkiv
  • Orr, Russell; Zhao, Sen; Klaveness, Dag; Yabuki, Akinori; Ikeda, Keiji & Makoto, Watanabe M. (2018). Enigmatic diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evolutionary Biology. ISSN 1471-2148. 18(115), s. 1–13. doi: 10.1186/s12862-018-1224-z. Fulltekst i vitenarkiv
  • Freeman, Mark A.; Fuss, Janina; Kristmundsson, Árni; Bjorbækmo, Marit Fredrikke Markussen; Mangot, Jean-Francois & del Campo, Javier [Vis alle 9 forfattere av denne artikkelen] (2017). X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates. Current Biology. ISSN 0960-9822. 27(11), s. 1645–1651. doi: 10.1016/j.cub.2017.04.045.
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Draft genome sequences of two unclassified bacteria, Hydrogenophaga sp. strains IBVHS1 and IBVHS2, isolated from environmental samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(34). doi: 10.1128/genomeA.00884-17.
  • Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves & Rombauts, S (2017). Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(34). doi: 10.1128/genomeA.00894-17.
  • Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves & Rombauts, S (2017). Draft genome Sequences of two Unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, Isolated from Environmental Samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. doi: 10.1128/genomeA.00787-17.
  • Krabberød, Anders Kristian; Bjorbækmo, Marit Markussen; Shalchian-Tabrizi, Kamran & Logares, Ramiro (2017). Exploring the oceanic microeukaryotic interactome with metaomics approaches. Aquatic Microbial Ecology. ISSN 0948-3055. 79(1), s. 1–12. doi: 10.3354/ame01811.
  • Krabberød, Anders Kristian; Orr, Russell; Bråte, Jon; Kristensen, Tom; Bjørklund, Kjell Rasmus & Shalchian-Tabrizi, Kamran (2017). Single cell transcriptomics, mega-phylogeny and the genetic basis of morphological innovations in Rhizaria. Molecular Biology and Evolution (MBE). ISSN 0737-4038. doi: 10.1093/molbev/msx075.
  • Forster, Dominik; Dunthorn, Micah; Mahé, Frédéric; Dolan, John R.; Audic, Stéphane & Bass, David [Vis alle 35 forfattere av denne artikkelen] (2016). Benthic protists: The under-charted majority. FEMS Microbiology Ecology. ISSN 0168-6496. 92(8), s. 1–11. doi: 10.1093/femsec/fiw120.
  • Massana, Ramon; Gobet, Angelique; Audic, Stéphane; Bass, David; Bittner, Lucie & Boutte, Christophe [Vis alle 35 forfattere av denne artikkelen] (2015). Marine protist diversity in European coastal watersand sediments as revealed by high-throughputsequencing. Environmental Microbiology. ISSN 1462-2912. 17(10), s. 4035–4049. doi: 10.1111/1462-2920.12955.
  • Bråte, Jon; Adamski, Marcin; Neumann, Ralf Stefan; Shalchian-Tabrizi, Kamran & Adamska, Maja (2015). Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proceedings of the Royal Society of London. Biological Sciences. ISSN 0962-8452. 282(1821), s. 1–9. doi: 10.1098/rspb.2015.1746. Fulltekst i vitenarkiv
  • Kumar, Surendra; Krabberød, Anders Kristian; Neumann, Ralf Stefan; Michalickova, Katerina; Zhao, Sen & Zhang, Xiaoli [Vis alle 7 forfattere av denne artikkelen] (2015). BIR pipeline for preparation of phylogenomic data. Evolutionary Bioinformatics. ISSN 1176-9343. 11, s. 79–83. doi: 10.4137/EBO.S10189.
  • Logares, Ramiro; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe & Christen, Richard [Vis alle 29 forfattere av denne artikkelen] (2014). Patterns of Rare and Abundant Marine Microbial Eukaryotes. Current Biology. ISSN 0960-9822. 24(8), s. 813–821. doi: 10.1016/j.cub.2014.02.050.
  • Neumann, Ralf Stefan; Kumar, Surendra; Haverkamp, Thomas Hendricus Augustus & Shalchian-Tabrizi, Kamran (2014). BLASTGrabber: A bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data. BMC Bioinformatics. ISSN 1471-2105. 15(128). doi: 10.1186/1471-2105-15-128. Fulltekst i vitenarkiv
  • Neumann, Ralf Stefan; Kumar, Surendra & Shalchian-Tabrizi, Kamran (2014). BLAST output visualization in the new sequencing era. Briefings in Bioinformatics. ISSN 1467-5463. 15(4), s. 484–503. doi: 10.1093/bib/bbt009.
  • Liang, Zhe; Demko, Viktor; Wilson, Robert Charles; Johnson, Kenneth; Ahmad, Rafi & Perroud, Pierre-Francois [Vis alle 12 forfattere av denne artikkelen] (2013). The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. The Plant Journal. ISSN 0960-7412. 75(5), s. 742–754. doi: 10.1111/tpj.12235.
  • Zhao, Sen; Shalchian-Tabrizi, Kamran & Klaveness, Dag (2013). Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics. Molecular Phylogenetics and Evolution. ISSN 1055-7903. 69(3), s. 462–468. doi: 10.1016/j.ympev.2013.08.005.
  • Zhao, Sen; Liang, Zhe; Demko, Viktor; Wilson, Robert; Johansen, Wenche & Olsen, Odd-Arne [Vis alle 7 forfattere av denne artikkelen] (2012). Massive expansion of the calpain gene family in unicellular eukaryotes. BMC Evolutionary Biology. ISSN 1471-2148. 12(193). doi: 10.1186/1471-2148-12-193.
  • Espelund, Mari; Minge, Marianne Aastebøl; Gabrielsen, Tove M; Nederbragt, Alexander Johan; Shalchian-Tabrizi, Kamran & Otis, Christian [Vis alle 9 forfattere av denne artikkelen] (2012). Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates. PLOS ONE. ISSN 1932-6203. 7(6). doi: 10.1371/journal.pone.0038809. Fulltekst i vitenarkiv
  • Suga, Hiroshi; Dacre, Michael; de Mendoza, Alex; Shalchian-Tabrizi, Kamran; Manning, G & Ruiz-Trillo, Iñaki (2012). Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases. Science Signaling. ISSN 1945-0877. 5(222). doi: 10.1126/scisignal.2002733.
  • Bråte, Jon; Krabberød, Anders Kristian; Dolven, Jane Karine Lønne; Ose, Randi Frida; Kristensen, Tom & Bjørklund, Kjell Rasmus [Vis alle 7 forfattere av denne artikkelen] (2012). Radiolaria Associated with Large Diversity of Marine Alveolates. Protist. ISSN 1434-4610. 163(5), s. 767–777. doi: 10.1016/j.protis.2012.04.004.
  • Zhao, Sen; Burki, Fabien; Bråte, Jon; Keeling, Patrick J; Klaveness, Dag & Shalchian-Tabrizi, Kamran (2012). Collodictyon - An Ancient Lineage in the Tree of Eukaryotes. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 29(6), s. 1557–1568. doi: 10.1093/molbev/mss001.
  • Torruella, Guifré; Derelle, Romain; Paps, Jordi; Lang, B. Franz; Roger, Andrew J. & Shalchian-Tabrizi, Kamran [Vis alle 7 forfattere av denne artikkelen] (2012). Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 29(2), s. 531–544. doi: 10.1093/molbev/msr185.
  • Klaveness, Dag; Bråte, Jon; Patil, Viswanath; Shalchian-Tabrizi, Kamran; Kluge, Ragnhild & Gislerød, Hans Ragnar [Vis alle 7 forfattere av denne artikkelen] (2011). The 18S and 28S rDNA indentity and phylogeny of the common lotic chrysophyte Hydrurus foetidus. European journal of phycology. ISSN 0967-0262. 46(3), s. 282–291. doi: 10.1080/09670262.2011.598950.
  • Krabberød, Anders Kristian; Bråte, Jon; Dolven, Jane Karine Lønne; Ose, Randi Frida; Klaveness, Dag & Kristensen, Tom [Vis alle 8 forfattere av denne artikkelen] (2011). Radiolaria Divided into Polycystina and Spasmaria in Combined 18S and 28S rDNA Phylogeny. PLOS ONE. ISSN 1932-6203. 6(8). doi: 10.1371/journal.pone.0023526.
  • Kumar, Surendra; Carlsen, Tor; Mevik, Bjørn-Helge; Enger, Pål; Blaalid, Rakel & Shalchian-Tabrizi, Kamran [Vis alle 7 forfattere av denne artikkelen] (2011). CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. BMC Bioinformatics. ISSN 1471-2105. 12. doi: 10.1186/1471-2105-12-182. Fulltekst i vitenarkiv
  • Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave ; Patil, Viswanath & Nederbragt, Alexander Johan [Vis alle 11 forfattere av denne artikkelen] (2011). Genome Evolution of a Tertiary Dinoflagellate Plastid. PLOS ONE. ISSN 1932-6203. 6(4). doi: 10.1371/journal.pone.0019132.
  • Shalchian-Tabrizi, Kamran; Røberg, Kjetil; Ree, Dan Kristofer; Klaveness, Dag & Bråte, Jon (2011). Marine-Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences. Journal of Eukaryotic Microbiology. ISSN 1066-5234. 58(4), s. 315–318. doi: 10.1111/j.1550-7408.2011.00547.x.
  • Bråte, Jon; Klaveness, Dag; Rygh, T; Jakobsen, Kjetill Sigurd & Shalchian-Tabrizi, Kamran (2010). Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations. BMC Microbiology. ISSN 1471-2180. 10(168). doi: 10.1186/1471-2180-10-168.
  • Logares, Ramiro; Bråte, Jon; Heinrich, F; Shalchian-Tabrizi, Kamran & Bertilsson, Stefan (2010). Infrequent Transitions between Saline and Fresh Waters in One of the Most Abundant Microbial Lineages (SAR11). Molecular Biology and Evolution (MBE). ISSN 0737-4038. 27(2), s. 347–357. doi: 10.1093/molbev/msp239.
  • Minge, Marianne Aastebøl; Shalchian-Tabrizi, Kamran; Tørresen, Ole Kristian; Takishita, Kiyotaka; Probert, Ian & Inagaki, Yuji [Vis alle 8 forfattere av denne artikkelen] (2010). A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum. BMC Evolutionary Biology. ISSN 1471-2148. 10. doi: 10.1186/1471-2148-10-191. Fulltekst i vitenarkiv
  • Bråte, Jon; Logares, Ramiro; Berney, Cedric; Ree, Dan Kristofer; Klaveness, Dag & Jakobsen, Kjetill Sigurd [Vis alle 7 forfattere av denne artikkelen] (2010). Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. The ISME Journal. ISSN 1751-7362. 4(9), s. 1144–1153. doi: 10.1038/ismej.2010.39.
  • Logares, Ramiro; Bråte, Jon; Bertilsson, Stefan; Clasen, Jessica L; Shalchian-Tabrizi, Kamran & Rengefors, Karin (2009). Infrequent marine-freshwater transitions in the microbial world. Trends in Microbiology. ISSN 0966-842X. 17(9), s. 414–422. doi: 10.1016/j.tim.2009.05.010.
  • Minge, Marianne Aastebøl; Silberman, Jeffrey; Orr, Russell; Cavalier-Smith, Thomas; Shalchian-Tabrizi, Kamran & Burki, Fabien [Vis alle 7 forfattere av denne artikkelen] (2009). Evolutionary position of breviate amoebae and the primary eukaryote divergence. Proceedings of the Royal Society of London. Biological Sciences. ISSN 0962-8452. 276(1657), s. 597–604. doi: 10.1098/rspb.2008.1358.
  • Riisberg, Ingvild; Orr, Russell; Kluge, Ragnhild; Shalchian-Tabrizi, Kamran; Bowers, HA & Vishwanath, Patil [Vis alle 7 forfattere av denne artikkelen] (2009). Seven Gene Phylogeny of Heterokonts. Protist. ISSN 1434-4610. 160(2), s. 191–204. doi: 10.1016/j.protis.2008.11.004.
  • Kumar, Surendra; Skjæveland, Åsmund; Orr, Russell; Enger, Pål; Ruden, Torgeir Andersen & Mevik, Bjørn-Helge [Vis alle 8 forfattere av denne artikkelen] (2009). AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses. BMC Bioinformatics. ISSN 1471-2105. 10. doi: 10.1186/1471-2105-10-357. Fulltekst i vitenarkiv
  • Logares, Ramiro; Bråte, Jon; Friederike, Heinrich; Shalchian-Tabrizi, Kamran & Bertilsson, Stefan (2009). Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11). Molecular Biology and Evolution (MBE). ISSN 0737-4038. doi: 10.1093/molbev/msp239.
  • Burki, Fabien; Inagaki, Yuji; Bråte, Jon; Archibald, John M; Keeling, Patrick J & Cavalier-Smith, Thomas [Vis alle 14 forfattere av denne artikkelen] (2009). Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates. Genome Biology and Evolution (GBE). ISSN 1759-6653. 1(1), s. 231–238. doi: 10.1093/gbe/evp022.
  • Vishwanath, Patil; Bråte, Jon; Shalchian-Tabrizi, Kamran & Jakobsen, Kjetill Sigurd (2009). Revisiting the Phylogenetic Position of Synchroma grande. Journal of Eukaryotic Microbiology. ISSN 1066-5234. 56(4), s. 394–396.
  • Burki, F; Shalchian-Tabrizi, Kamran & Pawlowski, J (2008). Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biology Letters. ISSN 1744-9561. 4, s. 366–369. doi: 10.1098/rsbl.2008.0224.
  • Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Espelund, Mari; Orr, Russell; Ruden, Torgeir Andersen & Jakobsen, Kjetill Sigurd (2008). Multigene Phylogeny of Choanozoa and the Origin of Animals. PLOS ONE. ISSN 1932-6203. 3(5).
  • Shalchian-Tabrizi, Kamran; Bråte, Jon; Logares, R; Klaveness, Dag; Berney, Cedrik & Jakobsen, Kjetill Sigurd (2008). Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny. Environmental Microbiology. ISSN 1462-2912. 10(10), s. 2635–2644. doi: 10.1111/j.1462-2920.2008.01685.x.
  • Tooming-Klunderud, Ave ; Rohrlack, Thomas; Shalchian-Tabrizi, Kamran; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2007). Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins. Microbiology (Reading). ISSN 1350-0872. 153(5), s. 1382–1393. doi: 10.1099/mic.0.2006/001123-0.
  • Stensrud, Øyvind; Schumacher, Trond; Shalchian-Tabrizi, Kamran; Svegården, Ingeborg Bjorvand & Kauserud, Håvard (2007). Accelerated nrDNA evolution and profound AT bias in the medicinal fungus Cordyceps sinensis. Mycological Research. ISSN 0953-7562. 111(4), s. 409–415. doi: 10.1016/j.mycres.2007.01.015.
  • Shalchian-Tabrizi, Kamran; Kauserud, Håvard; Massana, R; Klaveness, Dag & Jakobsen, Kjetill Sigurd (2007). Analysis of environmental 18S ribosomal RNA sequences reveals unknown diversity of the cosmopolitan phylum Telonemia. Protist. ISSN 1434-4610. 158, s. 173–180. doi: 10.1016/j.protis.2006.10.003.
  • Logares, Ramiro; Rengefors, Karin; Kremp, Anke; Shalchian-Tabrizi, Kamran; Boltovskoy, Andrés & Tengs, Torstein [Vis alle 8 forfattere av denne artikkelen] (2007). Phenotypically different microalgal morphospecies with identical ribosomal DNA: A case of rapid adaptive evolution? Microbial Ecology. ISSN 0095-3628. 53, s. 549–561. doi: 10.1007/s00248-006-9088-y.
  • Edvardsen, B; Eikrem, W; Shalchian-Tabrizi, K; Riisberg, I; Johnsen, Geir & Naustvoll, L [Vis alle 7 forfattere av denne artikkelen] (2007). Verrucophora farcimen gen. et sp nov (Dictyochophyceae, Heterokonta) - A bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway. Journal of Phycology. ISSN 0022-3646. 43, s. 1054–1070. doi: 10.1111/j.1529-8817.2007.00390.x.
  • Burki, Fabien; Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Skjæveland, Åsmund; Nikolajev, Sergey I & Jakobsen, Kjetill Sigurd [Vis alle 7 forfattere av denne artikkelen] (2007). Phylogenomics Reshuffles the Eukaryotic Supergroups. PLOS ONE. ISSN 1932-6203. 2(8). doi: 10.1371/journal.pone.0000790.
  • Kauserud, Håvard; Shalchian-Tabrizi, Kamran & DeCock, Cony (2007). Multi-locus sequencing reveals multiple geographically structured lineages of Coniophora arida and C. olivacea (Boletales) in North America. Mycologia. ISSN 0027-5514. 99, s. 705–713.
  • Logares, Ramiro; Shalchian-Tabrizi, Kamran; Boltovskoy, Andrés & Rengefors, Karin (2007). Extensive dinoflagellate phylogenies indicate infrequent and usually not recent marine-freshwater transitions. Molecular Phylogenetics and Evolution. ISSN 1055-7903. 45, s. 887–903. doi: 10.1016/j.ympev.2007.08.005.
  • Kauserud, Håvard; Stensrud, Øyvind; DeCock, Cony; Shalchian-Tabrizi, Kamran & Schumacher, Trond (2006). Multiple gene genealogies and AFLPs suggest cryptic speciation and long-distance dispersal in the basidiomycete Serpula himantioides (Boletales). Molecular Ecology. ISSN 0962-1083. 15(2), s. 421–431. doi: 10.1111/j.1365-294X.2005.02768.
  • Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Cavalier-Smith, Thomas; Nedreklepp, Joachim; Klaveness, Dag & Jakobsen, Kjetill Sigurd (2006). Combined Heat Shock Protein 90 and Ribosomal RNA Sequence Phylogeny Supports Multiple Replacements of Dinoflagellate Plastids. Journal of Eukaryotic Microbiology. ISSN 1066-5234. 53(3), s. 217–224.
  • Shalchian-Tabrizi, Kamran; Eikrem, Wenche; Klaveness, Dag; Vaulot, Daniel; Minge, Marianne Aastebøl & LeGall, F [Vis alle 12 forfattere av denne artikkelen] (2006). Telonemia, a new protist phylum with affinity to chromist lineages. Proceedings of the Royal Society of London. Biological Sciences. ISSN 0962-8452. 273, s. 1833–1842. doi: 10.1098/rspb.2006.3515.
  • Shalchian-Tabrizi, Kamran; Skånseng, Marianne; Ronqvist, Fredrik; Klaveness, Dag; Bachvaroff, Tsvetan R & Delwiche, Charles F. [Vis alle 9 forfattere av denne artikkelen] (2006). Heterotachy Processes in Rhodophyte-Derived Secondhand Plastid Genes: Implications for Addressing the Origin and Evolution of Dinoflagellate Plastids. Molecular Biology and Evolution (MBE). ISSN 0737-4038. 23, s. 1504–1515. doi: 10.1093/molbev/msl011.

Se alle arbeider i Cristin

  • Spilde, Ingrid; Bråte, Jon & Shalchian-Tabrizi, Kamran (2019). Knøttlite mysterium: Hva er egentlig forskjellen på deg og en encellet skapning? [Fagblad]. Forskning.no.
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Erratum: "Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples" [Genome Announc, 5, 33, (2017), (e00787-17)] DOI:10.1128/genomeA.00787-17. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(41:e01152-17), s. 1–1. doi: 10.1128/genomeA.01152-17.
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(33), s. 1–3. doi: 10.1128/genomeA.00787-17.
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Draft genome sequences of two unclassified bacteria, Sphingomonas sp. strains IBVSS1 and IBVSS2, isolated from environmental samples. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5:e00894-17(34), s. 1–3. doi: 10.1128/genomeA.00894-17.
  • Orr, Russell; Rombauts, S; Van De Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Erratum to "Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples" [Genome Announc., 2017, 5 (34):e00894-17.] Doi: 10.1128/genomeA.00894-17. Microbiology Resource Announcements (MRA). ISSN 2169-8287. 5(41). doi: 10.1128/genomeA.01175-17.
  • Evenstad, Andreas; Lieblein Røsæg, Line; Andresen, Ina Jungersen; Shalchian-Tabrizi, Kamran & Bråte, Jon (2016). Evolution of non-coding RNAs in ctenophores.
  • Lieblein Røsæg, Line; Evenstad, Andreas; Andresen, Ina Jungersen; Bråte, Jon & Shalchian-Tabrizi, Kamran (2016). Postembryonic development of Mnemiopsis leidyi inferred from gene expression data.
  • Haraldsen, Arthur Alexander Blørstad; Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Grini, Paul Eivind & Shalchian-Tabrizi, Kamran (2016). Pre-metazoan origin of animal microRNAs.
  • Orr, Russell; Zhao, Sen; Yabuki, Akinori & Shalchian-Tabrizi, Kamran (2016). PacBio sequencing reveals the diversity and ecology of a deeply diverging eukaryote lineage.
  • Haraldsen, Arthur Alexander Blørstad; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois; Fuss, Janina; Shalchian-Tabrizi, Kamran & Hansen, Haakon [Vis alle 7 forfattere av denne artikkelen] (2015). Protist diversity in a marine and lacustrine system: Patterns across a salinity gradient.
  • Fuss, Janina; Grønneberg, Estelle; Gylt, Torbjørn; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois & Shalchian-Tabrizi, Kamran [Vis alle 7 forfattere av denne artikkelen] (2015). Pee, poo and parasitic protists - what is living inside the fish we eat?
  • Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad & Shalchian-Tabrizi, Kamran (2015). Expanding our knowledge about parasites using PATHOS-DB (The PArasiTe–HOSt-DataBase).
  • Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad & Shalchian-Tabrizi, Kamran (2015). HIDDEN PROTIST PARASITES: HOW CAN THEY BE DETECTED?
  • Fuss, Janina; Mangot, Jean-Francois; Bjorbækmo, Marit Markussen; Freeman, Mark A.; Bass, David & Shalchian-Tabrizi, Kamran [Vis alle 7 forfattere av denne artikkelen] (2015). THE ENIGMATIC BASAL ALVEOLATE PARASITE X-CELL: CAN MULTIPLE GENOMIC APPROACHES REVEAL MORE?
  • Enevoldsen, Emily; Liow, Lee Hsiang; Voje, Kjetil L.; Orr, Russell; Shalchian-Tabrizi, Kamran & Krabberød, Anders Kristian (2014). Macroevolution through molecular and morphological lenses: a history of microporellids.
  • Demko, Viktor; Johansen, Wenche; Perroud, Pierre-francois; Liang, Zhe; Shalchian-Tabrizi, Kamran & Zhao, Sen [Vis alle 9 forfattere av denne artikkelen] (2013). The evolutionary history of eukaryotic calpains displays multiple variants of regulatory mechanisms for CysPc activity.
  • Tidemann, Grethe; Shalchian-Tabrizi, Kamran; Vrålstad, Trude & Carlsen, Tor (2012). Hvordan skape et toppforskningsmiljø på under fem år. [Avis]. Uniforum.
  • Demko, Viktor; Ako, Ako Eugene; Perroud, Pierre-Francois; Liang, Zhe; Johansen, Wenche & Wilson, Robert [Vis alle 10 forfattere av denne artikkelen] (2012). Searching for cellular targets of the plant calpain DEK1.
  • Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert; Shalchian-Tabrizi, Kamran & Johansen, Wenche [Vis alle 7 forfattere av denne artikkelen] (2012). The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants.
  • Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert Charles; Shalchian-Tabrizi, Kamran & Olsen, Odd-Arne [Vis alle 7 forfattere av denne artikkelen] (2011). The calpain module of the DEK1 protein from the moss Physcomitrella functionally complements the Arabidopsis dek1-3 mutant.
  • Demko, Viktor; Perroud, Pierre-Francois; Johansen, Wenche; Wilson, Robert Charles; Liang, Zhe & Shalchian-Tabrizi, Kamran [Vis alle 7 forfattere av denne artikkelen] (2011). The DEK1 and CRINKLY4 proteins play a fundamental role in the development of land plants - from Arabidopsis back to the moss Physcomitrella patens.
  • Johansen, Wenche; Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert Charles & Shalchian-Tabrizi, Kamran [Vis alle 7 forfattere av denne artikkelen] (2011). Dek1 calpain evolution.
  • Perroud, Pierre-Francois; Wilson, Robert Charles; Demko, Viktor; Liang, Zhe; Johansen, Wenche & Shalchian-Tabrizi, Kamran [Vis alle 9 forfattere av denne artikkelen] (2011). Multiple roles for DEK1 in Physcomitrella patens.
  • Olsen, Odd-Arne; Johansen, Wenche; Emilsen, Sidsel; Belova, Tatiana; Liang, Zhe & Smalås, Arne [Vis alle 17 forfattere av denne artikkelen] (2010). Structural & functional significance of the DEK1 phytocalpain during land plant evolution from green algae.
  • Wilson, Robert; Perroud, Pierre-Francois; Johansen, Wenche; Liang, Zhe; Belova, Tatiana & Lorentzen, Marit [Vis alle 14 forfattere av denne artikkelen] (2010). Was the transmembrane-anchored DEK1 calpain key to the development of differentiated multicellular land plants?
  • Dittami, Simon; Riisberg, Ingvild; John, Uwe; Orr, Russell; Shalchian-Tabrizi, Kamran & Jakobsen, Kjetill Sigurd (2010). Analysis of expressed sequence tags from the ichtyotoxic dictyochophyte Pseudochattonella farcimen.
  • Bråte, Jon; Krabberød, Anders Kristian; Dolven, Jane Karine Lønne; Ose, Randi Frida; Kristensen, Tom & Bjørklund, Kjell Rasmus [Vis alle 7 forfattere av denne artikkelen] (2010). Diversity of unculturable Radiolaria and their symbionts revealed by 18S rDNA phylogeny.
  • Dolven, Jane Karine Lønne; Bjørklund, Kjell Rasmus; Bråte, Jon; Krabberød, Anders Kristian; Klaveness, Dag & Shalchian-Tabrizi, Kamran (2009). Polycystina. Polycystine radiolarians.
  • Shalchian-Tabrizi, Kamran (2009). Bioportal Bioinformatics Service.
  • Shalchian-Tabrizi, Kamran (2008). Dyrenes opprinnelse. [Internett]. Forskning.no.
  • Shalchian-Tabrizi, Kamran (2008). Ein portal å rekna med. [Avis]. Uniforum, UiO.
  • Shalchian-Tabrizi, Kamran (2008). EVOLUTION: Building the Tree of Life, Genome by Genome. [Avis]. Science Magazine.
  • Shalchian-Tabrizi, Kamran (2008). Telonemia - origin and diversity.
  • Shalchian-Tabrizi, Kamran (2008). Phylogenomic analyses of the Tree Of Life, with focus on Telonemia.
  • Shalchian-Tabrizi, Kamran (2008). Cross-colonisation of marine and freshwater in Telonemia, cryptomonads and Perkinsea.
  • Minge, Marianne Aastebøl; Shalchian-Tabrizi, Kamran & Jakobsen, Kjetill Sigurd (2008). Chimeric proteomes: The plastid evolution of the green dinoflagellate Lepidodinium chlorophorum.
  • Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Espelund, Mari; Orr, Russell; Ruden, Torgeir A. & Jakobsen, Kjetill Sigurd (2008). The Choanozoan Ministeria vibrans: Multigene Phylogeny and the Origin of Animals.
  • Patil, Vishwanath; Bråte, Jon; Klaveness, Dag; Kluge, Ragnhild; Shalchian-Tabrizi, Kamran & Gislerød, Hans Ragnar [Vis alle 7 forfattere av denne artikkelen] (2008). Molecular phylogeny of Hydrurus, a fresh water chrysophyte rich in lipids.
  • Minge, Marianne Aastebøl; Silberman, Jeffrey; Orr, Russell; Cavalier-Smith, Thomas; Shalchian-Tabrizi, Kamran & Burki, Fabien [Vis alle 7 forfattere av denne artikkelen] (2008). Breviata anathema - an unusual Amoebozoa.
  • Shalchian-Tabrizi, Kamran (2007). Livets tre har mistet en gren. [Avis]. Apollon.
  • Shalchian-Tabrizi, Kamran (2007). Brukarforum for bioinformatikk på Blindern. [Avis]. IT-avisa, UiO.
  • Shalchian-Tabrizi, Kamran (2006). Norske forskere finner ny livsform. [Internett]. Forsknin.no.
  • Liang, Zhe; Olsen, Odd-Arne; Shalchian-Tabrizi, Kamran; Wilson, Robert & Johansen, Wenche (2012). The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants. Norwegian University of Life Sciences. ISSN 978-82-575-1083-1.

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Publisert 3. nov. 2010 15:32 - Sist endret 14. sep. 2021 15:37