Kamran Shalchian-Tabrizi

Bilde av Kamran Shalchian-Tabrizi
English version of this page
Telefon +47-22857302
Mobiltelefon +47-41045328
Rom 4203
Brukernavn
Besøksadresse Blindernveien 31 None 0371 OSLO
Postadresse Postboks 1066 Blindern 0316 OSLO

Faglige interesser

Mine hovedinteresser er studier av store transisjoner for eukaryote organismer i historien. Jeg er hovedsakelig interessert i å forstå evolusjonære slektskap mellom de store linjene av eukaryoter for økt forståelse av evolusjon av cellesturkturer, organeller og genomer. For tiden undersøker jeg muligheter for å studere eukaryote genomer og transkriptomer uten å behøve en kultur av organismene, og relatere diversiteten av gener og genomer til den evolusjonære historien til disse gåtefulle eukaryote slektene og deres økologiske tilpassninger.

Undervisning

Bakgrunn

Utdannelse:

  • 2003 Dr. scient., Molekylærevolusjon og fylogeni, Biologisk Institutt, UiO
  • 1999 Cand. scient. biologi, Seksjon for generell genetikk, Biologisk Institutt, UiO
  • 1995 Cand. mag., biologi, Biologisk Institutt, UiO

 Tidligere akademiske stillinger:

  • 2004-2006 Post doc. ved UiO og University of Oxford, England

Priser

  • 2010 Darwin prisen ved UiO

Verv

  • Leder for Microbial Evolution Research Group (MERG)
  • Startet utviklingen av Bioportal bioinformatisk webservice, og er for tiden leder for utvikling av tjenesten
  • Rewiever av artikler i:
    • Molecular Biology and Evolution
    • Systematic Biology
    • BMC microbiology
    • Journal of Phycology
    • Gene
    • Protists
    • Journal of Eukaryote Microbiology
    • Molecular Phylogenetics and Evolution

Samarbeid

Jeg samarbeider med flere personer både nasjonalt og internasjonalt. Mine samarbeidspartnere er å finne ved følgende institusjoner:

Nasjonale:

  • Flere samarbeidspartnere ved UiO og MERG
  • Universitetet for miljø- og biovitenskap (UMB)

Internasjonale:

  • University of Lund, Sverige
  • Natural History Museum, London, England
  • Laval University, Quebec, Canada
  • University of British Columbia, Canada
  • University of Geneva, Sveits
  • Dalhousie University, Halifax, Canada
  • Institute of Marine Sciences, Barcelona, Spain
  • University of Barcelona, Spain
  • University of Oxford, England
  • University of Tsukuba, Japan

 

Emneord: Life sciences

Publikasjoner

  • Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Haraldsen, Arthur Alexander Blørstad; Tarver, James E.; Suga, Hiroshi; Donoghue, Philip C.J.; Peterson, Kevin J.; Ruiz-Trillo, Iñaki; Grini, Paul Eivind & Shalchian-Tabrizi, Kamran (2018). Unicellular origin of the animal microRNA machinery. Current Biology.  ISSN 0960-9822.  28(20), s 3288- 3295.e5 . doi: 10.1016/j.cub.2018.08.018
  • Orr, Russell; Zhao, Sen; Klaveness, Dag; Yabuki, Akinori; Ikeda, Keiji; Makoto, Watanabe M. & Shalchian-Tabrizi, Kamran (2018). Enigmatic diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evolutionary Biology.  ISSN 1471-2148.  18:115, s 1- 13 . doi: 10.1186/s12862-018-1224-z
  • Freeman, Mark A.; Fuss, Janina; Kristmundsson, Árni; Bjorbækmo, Marit Fredrikke Markussen; Mangot, Jean-Francois; del Campo, Javier; Keeling, Patrick J; Shalchian-Tabrizi, Kamran & Bass, David (2017). X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates. Current Biology.  ISSN 0960-9822.  27(11), s 1645- 1651 . doi: 10.1016/j.cub.2017.04.045
  • Krabberød, Anders Kristian; Bjorbækmo, Marit Markussen; Shalchian-Tabrizi, Kamran & Logares, Ramiro (2017). Exploring the oceanic microeukaryotic interactome with metaomics approaches. Aquatic Microbial Ecology.  ISSN 0948-3055.  79(1), s 1- 12 . doi: 10.3354/ame01811
  • Krabberød, Anders Kristian; Orr, Russell; Bråte, Jon; Kristensen, Tom; Bjørklund, Kjell Rasmus & Shalchian-Tabrizi, Kamran (2017). Single cell transcriptomics, mega-phylogeny and the genetic basis of morphological innovations in Rhizaria. Molecular biology and evolution.  ISSN 0737-4038. . doi: /10.1093/molbev/msx075 Vis sammendrag
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Draft genome sequences of two unclassified bacteria, Hydrogenophaga sp. strains IBVHS1 and IBVHS2, isolated from environmental samples. Genome Announcements.  ISSN 2169-8287.  5(34) . doi: 10.1128/genomeA.00884-17
  • Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves & Rombauts, S (2017). Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples. Genome Announcements.  ISSN 2169-8287.  5(34) . doi: 10.1128/genomeA.00894-17
  • Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves & Rombauts, S (2017). Draft genome Sequences of two Unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, Isolated from Environmental Samples. Genome Announcements.  ISSN 2169-8287. . doi: 10.1128/genomeA.00787-17
  • Forster, Dominik; Dunthorn, Micah; Mahé, Frédéric; Dolan, John R.; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Edvardsen, Bente; Egge, Elianne Dunthorn; Eikrem, Wenche; Gobet, Angélique; Kooistra, Wiebe H.C.F.; Logares, Ramiro; Massana, Ramon; Montresor, Marina; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C.; Romac, Sarah; Shalchian-Tabrizi, Kamran; Simon, Nathalie; Richards, Thomas A.; Santini, Sébastien; Sarno, Diana; Siano, Raffaele; Vaulot, Daniel; Wincker, Patrick; Zingone, Adriana; De Vargas, Colomban & Stoeck, Thorsten (2016). Benthic protists: The under-charted majority. FEMS Microbiology Ecology.  ISSN 0168-6496.  92(8), s 1- 11 . doi: 10.1093/femsec/fiw120
  • Bråte, Jon; Adamski, Marcin; Neumann, Ralf Stefan; Shalchian-Tabrizi, Kamran & Adamska, Maja (2015). Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proceedings of the Royal Society of London. Biological Sciences.  ISSN 0962-8452.  282(1821), s 1- 9 . doi: 10.1098/rspb.2015.1746 Fulltekst i vitenarkiv. Vis sammendrag
  • Kumar, Surendra; Krabberød, Anders Kristian; Neumann, Ralf Stefan; Michalickova, Katerina; Zhao, Sen; Zhang, Xiaoli & Shalchian-Tabrizi, Kamran (2015). BIR pipeline for preparation of phylogenomic data. Evolutionary Bioinformatics.  ISSN 1176-9343.  11, s 79- 83 . doi: 10.4137/EBO.S10189
  • Massana, Ramon; Gobet, Angelique; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Chambouvet, Aurélie; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R.; Dunthorn, Micah; Edvardsen, Bente; Forn, Irene; Forster, Dominik; Guillou, Laure; Jaillon, Olivier; Kooistra, Wiebe H. C. F.; Logares, Ramiro; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C.; Probert, Ian; Romac, Sarah; Richards, Thomas; Santini, Sebastien; Shalchian-Tabrizi, Kamran; Siano, Raffaele; Simon, Nathalie; Stoeck, Thorsten; Vaulot, Daniel; Zingone, Adriana & de Vargas, Colomban (2015). Marine protist diversity in European coastal watersand sediments as revealed by high-throughputsequencing. Environmental Microbiology.  ISSN 1462-2912.  17(10), s 4035- 4049 . doi: 10.1111/1462-2920.12955
  • Logares, Ramiro; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R.; Dunthorn, Micah; Edvardsen, Bente; Gobet, Angelique; Kooistra, Wiebe H.C.F.; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C.; Romac, Sarah; Shalchian-Tabrizi, Kamran; Simon, Nathalie; Stoeck, Thorsten; Santini, Sebastien; Siano, Raffaele; Wincker, Patrick; Zingone, Adriana; Richards, Thomas A.; de Vargas, Colomban & Massana, Ramon (2014). Patterns of Rare and Abundant Marine Microbial Eukaryotes. Current Biology.  ISSN 0960-9822.  24(8), s 813- 821 . doi: 10.1016/j.cub.2014.02.050
  • Neumann, Ralf Stefan; Kumar, Surendra; Haverkamp, Thomas Hendricus Augustus & Shalchian-Tabrizi, Kamran (2014). BLASTGrabber: A bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data. BMC Bioinformatics.  ISSN 1471-2105.  15(128) . doi: 10.1186/1471-2105-15-128 Fulltekst i vitenarkiv.
  • Neumann, Ralf Stefan; Kumar, Surendra & Shalchian-Tabrizi, Kamran (2014). BLAST output visualization in the new sequencing era. Briefings in Bioinformatics.  ISSN 1467-5463.  15(4), s 484- 503 . doi: 10.1093/bib/bbt009
  • Liang, Zhe; Demko, Viktor; Wilson, Robert Charles; Johnson, Kenneth; Ahmad, Rafi; Perroud, Pierre-Francois; Quatrano, Ralph; Zhao, Sen; Shalchian-Tabrizi, Kamran; Otegui, Marisa; Olsen, Odd-Arne & Johansen, Wenche (2013). The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. The Plant Journal.  ISSN 0960-7412.  75(5), s 742- 754 . doi: 10.1111/tpj.12235
  • Zhao, Sen; Shalchian-Tabrizi, Kamran & Klaveness, Dag (2013). Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics. Molecular Phylogenetics and Evolution.  ISSN 1055-7903.  69(3), s 462- 468 . doi: 10.1016/j.ympev.2013.08.005 Vis sammendrag
  • Bråte, Jon; Krabberød, Anders Kristian; Dolven, Jane Karine Lønne; Ose, Randi Frida; Kristensen, Tom; Bjørklund, Kjell Rasmus & Shalchian-Tabrizi, Kamran (2012). Radiolaria Associated with Large Diversity of Marine Alveolates. Protist.  ISSN 1434-4610.  163(5), s 767- 777 . doi: 10.1016/j.protis.2012.04.004 Vis sammendrag
  • Espelund, Mari; Minge, Marianne Aastebøl; Gabrielsen, Tove M; Nederbragt, Alexander Johan; Shalchian-Tabrizi, Kamran; Otis, Christian; Turmel, Monique; Lemieux, Claude & Jakobsen, Kjetill Sigurd (2012). Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates. PLoS ONE.  ISSN 1932-6203.  7(6) . doi: 10.1371/journal.pone.0038809 Fulltekst i vitenarkiv.
  • Suga, Hiroshi; Dacre, Michael; de Mendoza, Alex; Shalchian-Tabrizi, Kamran; Manning, G & Ruiz-Trillo, Iñaki (2012). Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases. Science Signaling.  ISSN 1937-9145.  5(222) . doi: 10.1126/scisignal.2002733
  • Torruella, Guifré; Derelle, Romain; Paps, Jordi; Lang, B. Franz; Roger, Andrew J.; Shalchian-Tabrizi, Kamran & Ruiz-Trillo, Iñaki (2012). Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Molecular biology and evolution.  ISSN 0737-4038.  29(2), s 531- 544 . doi: 10.1093/molbev/msr185
  • Zhao, Sen; Burki, Fabien; Bråte, Jon; Keeling, Patrick J; Klaveness, Dag & Shalchian-Tabrizi, Kamran (2012). Collodictyon - An Ancient Lineage in the Tree of Eukaryotes. Molecular biology and evolution.  ISSN 0737-4038.  29(6), s 1557- 1568 . doi: 10.1093/molbev/mss001
  • Zhao, Sen; Liang, Zhe; Demko, Viktor; Wilson, Robert; Johansen, Wenche; Olsen, Odd-Arne & Shalchian-Tabrizi, Kamran (2012). Massive expansion of the calpain gene family in unicellular eukaryotes. BMC Evolutionary Biology.  ISSN 1471-2148.  12(193) . doi: 10.1186/1471-2148-12-193
  • Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave; Patil, Viswanath; Nederbragt, Alexander Johan; Otis, Christian; Turmel, Monique; Shalchian-Tabrizi, Kamran; Lemieux, Claude & Jakobsen, Kjetill Sigurd (2011). Genome Evolution of a Tertiary Dinoflagellate Plastid. PLoS ONE.  ISSN 1932-6203.  6(4), s e19132 . doi: 10.1371/journal.pone.0019132
  • Klaveness, Dag; Bråte, Jon; Patil, Viswanath; Shalchian-Tabrizi, Kamran; Kluge, Ragnhild; Gislerød, Hans Ragnar & Jakobsen, Kjetill Sigurd (2011). The 18S and 28S rDNA indentity and phylogeny of the common lotic chrysophyte Hydrurus foetidus. European journal of phycology.  ISSN 0967-0262.  46(3), s 282- 291 . doi: 10.1080/09670262.2011.598950
  • Krabberød, Anders Kristian; Bråte, Jon; Dolven, Jane Karine Lønne; Ose, Randi Frida; Klaveness, Dag; Kristensen, Tom; Bjørklund, Kjell Rasmus & Shalchian-Tabrizi, Kamran (2011). Radiolaria Divided into Polycystina and Spasmaria in Combined 18S and 28S rDNA Phylogeny. PLoS ONE.  ISSN 1932-6203.  6(8) . doi: 10.1371/journal.pone.0023526 Vis sammendrag
  • Kumar, Surendra; Carlsen, Tor; Mevik, Bjørn-Helge; Enger, Pål; Blaalid, Rakel; Shalchian-Tabrizi, Kamran & Kauserud, Håvard (2011). CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. BMC Bioinformatics.  ISSN 1471-2105.  12 . doi: 10.1186/1471-2105-12-182 Fulltekst i vitenarkiv. Vis sammendrag
  • Shalchian-Tabrizi, Kamran; Røberg, Kjetil; Ree, Dan Kristofer; Klaveness, Dag & Bråte, Jon (2011). Marine-Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences. Journal of Eukaryotic Microbiology.  ISSN 1066-5234.  58(4), s 315- 318 . doi: 10.1111/j.1550-7408.2011.00547.x
  • Bråte, Jon; Klaveness, Dag; Rygh, T; Jakobsen, Kjetill Sigurd & Shalchian-Tabrizi, Kamran (2010). Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations. BMC Microbiology.  ISSN 1471-2180.  10(168) . doi: 10.1186/1471-2180-10-168
  • Bråte, Jon; Logares, Ramiro; Berney, Cedric; Ree, Dan Kristofer; Klaveness, Dag; Jakobsen, Kjetill Sigurd & Shalchian-Tabrizi, Kamran (2010). Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. The ISME Journal.  ISSN 1751-7362.  4(9), s 1144- 1153 . doi: 10.1038/ismej.2010.39
  • Logares, Ramiro; Bråte, Jon; Heinrich, F; Shalchian-Tabrizi, Kamran & Bertilsson, Stefan (2010). Infrequent Transitions between Saline and Fresh Waters in One of the Most Abundant Microbial Lineages (SAR11). Molecular biology and evolution.  ISSN 0737-4038.  27(2), s 347- 357 . doi: 10.1093/molbev/msp239
  • Minge, Marianne Aastebøl; Shalchian-Tabrizi, Kamran; Tørresen, Ole Kristian; Takishita, Kiyotaka; Probert, Ian; Inagaki, Yuji; Klaveness, Dag & Jakobsen, Kjetill Sigurd (2010). A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum. BMC Evolutionary Biology.  ISSN 1471-2148.  10 . doi: 10.1186/1471-2148-10-191
  • Riisberg, Ingvild; Orr, Russell; Kluge, Ragnhild; Shalchian-Tabrizi, Kamran; Bowers, HA; Vishwanath, Patil; Edvardsen, Bente & Jakobsen, Kjetill Sigurd (2009). Seven Gene Phylogeny of Heterokonts. Protist.  ISSN 1434-4610.  160(2), s 191- 204 . doi: 10.1016/j.protis.2008.11.004
  • Vishwanath, Patil; Bråte, Jon; Shalchian-Tabrizi, Kamran & Jakobsen, Kjetill Sigurd (2009). Revisiting the Phylogenetic Position of Synchroma grande. Journal of Eukaryotic Microbiology.  ISSN 1066-5234.  56(4), s 394- 396
  • Burki, Fabien; Inagaki, Yuji; Bråte, Jon; Archibald, John M; Keeling, Patrick J; Cavalier-Smith, Thomas; Sakaguchi, Miako; Hashimoto, Tetsuo; Horak, Ales; Kumar, Surendra; Klaveness, Dag; Jakobsen, Kjetill Sigurd; Pawlowski, Jan & Shalchian-Tabrizi, Kamran (2009). Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates. Genome Biology and Evolution.  ISSN 1759-6653.  1(1), s 231- 238 . doi: 10.1093/gbe/evp022
  • Kumar, Surendra; Skjæveland, Åsmund; Orr, Russell; Enger, Pål; Ruden, Torgeir Andersen; Mevik, Bjørn-Helge; Burki, Fabien; Botnen, Andreas Valeur & Shalchian-Tabrizi, Kamran (2009). AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses. BMC Bioinformatics.  ISSN 1471-2105.  10 . doi: 10.1186/1471-2105-10-357 Fulltekst i vitenarkiv. Vis sammendrag
  • Logares, Ramiro; Bråte, Jon; Bertilsson, Stefan; Clasen, Jessica L; Shalchian-Tabrizi, Kamran & Rengefors, Karin (2009). Infrequent marine-freshwater transitions in the microbial world. Trends in Microbiology.  ISSN 0966-842X.  17(9), s 414- 422 . doi: 10.1016/j.tim.2009.05.010
  • Logares, Ramiro; Bråte, Jon; Friederike, Heinrich; Shalchian-Tabrizi, Kamran & Bertilsson, Stefan (2009). Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11). Molecular biology and evolution.  ISSN 0737-4038. . doi: 10.1093/molbev/msp239
  • Minge, Marianne Aastebøl; Silberman, Jeffrey; Orr, Russell; Cavalier-Smith, Thomas; Shalchian-Tabrizi, Kamran; Burki, Fabien; Skjæveland, Åsmund & Jakobsen, Kjetill Sigurd (2009). Evolutionary position of breviate amoebae and the primary eukaryote divergence. Proceedings of the Royal Society of London. Biological Sciences.  ISSN 0962-8452.  276(1657), s 597- 604 . doi: 10.1098/rspb.2008.1358
  • Burki, F; Shalchian-Tabrizi, Kamran & Pawlowski, J (2008). Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biology Letters.  ISSN 1744-9561.  4, s 366- 369 . doi: 10.1098/rsbl.2008.0224
  • Shalchian-Tabrizi, Kamran; Bråte, Jon; Logares, R; Klaveness, Dag; Berney, Cedrik & Jakobsen, Kjetill Sigurd (2008). Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny. Environmental Microbiology.  ISSN 1462-2912.  10(10), s 2635- 2644 . doi: 10.1111/j.1462-2920.2008.01685.x
  • Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Espelund, Mari; Orr, Russell; Ruden, Torgeir Andersen; Jakobsen, Kjetill Sigurd & Cavalier-Smith, Thomas (2008). Multigene Phylogeny of Choanozoa and the Origin of Animals. PLoS ONE.  ISSN 1932-6203.  3(5)
  • Edvardsen, B; Eikrem, W; Shalchian-Tabrizi, K; Riisberg, I; Johnsen, Geir; Naustvoll, L & Throndsen, J (2007). Verrucophora farcimen gen. et sp nov (Dictyochophyceae, Heterokonta) - A bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway. Journal of Phycology.  ISSN 0022-3646.  43, s 1054- 1070 . doi: 10.1111/j.1529-8817.2007.00390.x
  • Burki, Fabien; Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Skjæveland, Åsmund; Nikolajev, Sergey I; Jakobsen, Kjetill Sigurd & Jan, Pawlowski (2007). Phylogenomics Reshuffles the Eukaryotic Supergroups. PLoS ONE.  ISSN 1932-6203.  2(8) . doi: 10.1371/journal.pone.0000790
  • Kauserud, Håvard; Shalchian-Tabrizi, Kamran & DeCock, Cony (2007). Multi-locus sequencing reveals multiple geographically structured lineages of Coniophora arida and C. olivacea (Boletales) in North America. Mycologia.  ISSN 0027-5514.  99, s 705- 713
  • Logares, Ramiro; Rengefors, Karin; Kremp, Anke; Shalchian-Tabrizi, Kamran; Boltovskoy, Andrés; Tengs, Torstein; Shurtleff, Aaron & Klaveness, Dag (2007). Phenotypically different microalgal morphospecies with identical ribosomal DNA: A case of rapid adaptive evolution?. Microbial Ecology.  ISSN 0095-3628.  53, s 549- 561 . doi: 10.1007/s00248-006-9088-y
  • Logares, Ramiro; Shalchian-Tabrizi, Kamran; Boltovskoy, Andrés & Rengefors, Karin (2007). Extensive dinoflagellate phylogenies indicate infrequent and usually not recent marine-freshwater transitions. Molecular Phylogenetics and Evolution.  ISSN 1055-7903.  45, s 887- 903 . doi: 10.1016/j.ympev.2007.08.005
  • Shalchian-Tabrizi, Kamran; Kauserud, Håvard; Massana, R; Klaveness, Dag & Jakobsen, Kjetill Sigurd (2007). Analysis of environmental 18S ribosomal RNA sequences reveals unknown diversity of the cosmopolitan phylum Telonemia. Protist.  ISSN 1434-4610.  158, s 173- 180 . doi: 10.1016/j.protis.2006.10.003
  • Stensrud, Øyvind; Schumacher, Trond; Shalchian-Tabrizi, Kamran; Svegården, Ingeborg Bjorvand & Kauserud, Håvard (2007). Accelerated nrDNA evolution and profound AT bias in the medicinal fungus Cordyceps sinensis. Mycological Research.  ISSN 0953-7562.  111(4), s 409- 415 . doi: 10.1016/j.mycres.2007.01.015 Vis sammendrag
  • Tooming-Klunderud, Ave; Rohrlack, Thomas; Shalchian-Tabrizi, Kamran; Kristensen, Tom & Jakobsen, Kjetill Sigurd (2007). Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins. Microbiology.  ISSN 1350-0872.  153(5), s 1382- 1393 . doi: 10.1099/mic.0.2006/001123-0
  • Kauserud, Håvard; Stensrud, Øyvind; DeCock, Cony; Shalchian-Tabrizi, Kamran & Schumacher, Trond (2006). Multiple gene genealogies and AFLPs suggest cryptic speciation and long-distance dispersal in the basidiomycete Serpula himantioides (Boletales). Molecular Ecology.  ISSN 0962-1083.  15(2), s 421- 431 . doi: 10.1111/j.1365-294X.2005.02768 Vis sammendrag
  • Shalchian-Tabrizi, Kamran; Eikrem, Wenche; Klaveness, Dag; Vaulot, Daniel; Minge, Marianne Aastebøl; LeGall, F; Romari, K; Throndsen, Jahn; Botnen, Andreas; Massana, R; Thomsen, Helge A. & Jakobsen, Kjetill Sigurd (2006). Telonemia, a new protist phylum with affinity to chromist lineages. Proceedings of the Royal Society of London. Biological Sciences.  ISSN 0962-8452.  273, s 1833- 1842 . doi: 10.1098/rspb.2006.3515
  • Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Cavalier-Smith, Thomas; Nedreklepp, Joachim; Klaveness, Dag & Jakobsen, Kjetill Sigurd (2006). Combined Heat Shock Protein 90 and Ribosomal RNA Sequence Phylogeny Supports Multiple Replacements of Dinoflagellate Plastids. Journal of Eukaryotic Microbiology.  ISSN 1066-5234.  53(3), s 217- 224
  • Shalchian-Tabrizi, Kamran; Skånseng, Marianne; Ronqvist, Fredrik; Klaveness, Dag; Bachvaroff, Tsvetan R; Delwiche, Charles F.; Botnen, Andreas Valeur; Tengs, T & Jakobsen, Kjetill Sigurd (2006). Heterotachy Processes in Rhodophyte-Derived Secondhand Plastid Genes: Implications for Addressing the Origin and Evolution of Dinoflagellate Plastids. Molecular biology and evolution.  ISSN 0737-4038.  23, s 1504- 1515 . doi: 10.1093/molbev/msl011
  • Gulden, Gro; Stensrud, Øyvind; Shalchian-Tabrizi, Kamran & Kauserud, Håvard (2005). Galerina Earle: A polyphyletic genus in the consortium of dark-spored agarics. Mycologia.  ISSN 0027-5514.  97(4), s 823- 837 Vis sammendrag

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  • Orr, Russell; Rombauts, S; Van De Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Erratum to "Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples" [Genome Announc., 2017, 5 (34):e00894-17.] Doi: 10.1128/genomeA.00894-17.. Genome Announcements.  ISSN 2169-8287.  5(41) . doi: 10.1128/genomeA.01175-17
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples. Genome Announcements.  ISSN 2169-8287.  5(33), s 1- 3 . doi: 10.1128/genomeA.00787-17
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Draft genome sequences of two unclassified bacteria, Sphingomonas sp. strains IBVSS1 and IBVSS2, isolated from environmental samples. Genome Announcements.  ISSN 2169-8287.  5:e00894-17(34), s 1- 3 . doi: 10.1128/genomeA.00894-17
  • Orr, Russell; Rombauts, Stephane; Van de Peer, Yves & Shalchian-Tabrizi, Kamran (2017). Erratum: "Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples" [Genome Announc, 5, 33, (2017), (e00787-17)] DOI:10.1128/genomeA.00787-17. Genome Announcements.  ISSN 2169-8287.  5(41:e01152-17), s 1- 1 . doi: 10.1128/genomeA.01152-17
  • Evenstad, Andreas; Lieblein Røsæg, Line; Andresen, Ina Jungersen; Shalchian-Tabrizi, Kamran & Bråte, Jon (2016). Evolution of non-coding RNAs in ctenophores.
  • Haraldsen, Arthur Alexander Blørstad; Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Grini, Paul Eivind & Shalchian-Tabrizi, Kamran (2016). Pre-metazoan origin of animal microRNAs.
  • Lieblein Røsæg, Line; Evenstad, Andreas; Andresen, Ina Jungersen; Bråte, Jon & Shalchian-Tabrizi, Kamran (2016). Postembryonic development of Mnemiopsis leidyi inferred from gene expression data.
  • Orr, Russell; Zhao, Sen; Yabuki, Akinori & Shalchian-Tabrizi, Kamran (2016). PacBio sequencing reveals the diversity and ecology of a deeply diverging eukaryote lineage.
  • Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad & Shalchian-Tabrizi, Kamran (2015). Expanding our knowledge about parasites using PATHOS-DB (The PArasiTe–HOSt-DataBase).
  • Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad & Shalchian-Tabrizi, Kamran (2015). HIDDEN PROTIST PARASITES: HOW CAN THEY BE DETECTED?.
  • Fuss, Janina; Grønneberg, Estelle; Gylt, Torbjørn; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois; Shalchian-Tabrizi, Kamran & Klaveness, Dag (2015). Pee, poo and parasitic protists - what is living inside the fish we eat?.
  • Fuss, Janina; Mangot, Jean-Francois; Bjorbækmo, Marit Markussen; Freeman, Mark A.; Bass, David; Shalchian-Tabrizi, Kamran & Klaveness, Dag (2015). THE ENIGMATIC BASAL ALVEOLATE PARASITE X-CELL: CAN MULTIPLE GENOMIC APPROACHES REVEAL MORE?.
  • Haraldsen, Arthur Alexander Blørstad; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois; Fuss, Janina; Shalchian-Tabrizi, Kamran; Hansen, Haakon & Klaveness, Dag (2015). Protist diversity in a marine and lacustrine system: Patterns across a salinity gradient. Vis sammendrag
  • Enevoldsen, Emily; Liow, Lee Hsiang; Voje, Kjetil L.; Orr, Russell; Shalchian-Tabrizi, Kamran & Krabberød, Anders Kristian (2014). Macroevolution through molecular and morphological lenses: a history of microporellids.
  • Demko, Viktor; Johansen, Wenche; Perroud, Pierre-francois; Liang, Zhe; Shalchian-Tabrizi, Kamran; Zhao, Sen; Olsen, Odd-Arne; Quatrano, Ralph S. & Wilson, Robert Charles (2013). The evolutionary history of eukaryotic calpains displays multiple variants of regulatory mechanisms for CysPc activity.
  • Demko, Viktor; Ako, Ako Eugene; Perroud, Pierre-Francois; Liang, Zhe; Johansen, Wenche; Wilson, Robert; Shalchian-Tabrizi, Kamran; Thiede, Bernd; Quatrano, Ralph & Olsen, Odd-Arne (2012). Searching for cellular targets of the plant calpain DEK1.
  • Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert; Shalchian-Tabrizi, Kamran; Johansen, Wenche & Olsen, Odd-Arne (2012). The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants.
  • Liang, Zhe; Olsen, Odd-Arne; Shalchian-Tabrizi, Kamran; Wilson, Robert & Johansen, Wenche (2012). The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants.
  • Tidemann, Grethe; Shalchian-Tabrizi, Kamran; Vrålstad, Trude & Carlsen, Tor (2012, 20. mars). Hvordan skape et toppforskningsmiljø på under fem år.  Uniforum.
  • Demko, Viktor; Perroud, Pierre-Francois; Johansen, Wenche; Wilson, Robert Charles; Liang, Zhe; Shalchian-Tabrizi, Kamran & Olsen, Odd-Arne (2011). The DEK1 and CRINKLY4 proteins play a fundamental role in the development of land plants - from Arabidopsis back to the moss Physcomitrella patens.
  • Johansen, Wenche; Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert Charles; Shalchian-Tabrizi, Kamran & Olsen, Odd-Arne (2011). Dek1 calpain evolution.
  • Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert Charles; Shalchian-Tabrizi, Kamran; Olsen, Odd-Arne & Johansen, Wenche (2011). The calpain module of the DEK1 protein from the moss Physcomitrella functionally complements the Arabidopsis dek1-3 mutant.
  • Perroud, Pierre-Francois; Wilson, Robert Charles; Demko, Viktor; Liang, Zhe; Johansen, Wenche; Shalchian-Tabrizi, Kamran; Cove, D.J.; Olsen, Odd-Arne & Quatrano, R.S. (2011). Multiple roles for DEK1 in Physcomitrella patens.
  • Bråte, Jon; Krabberød, Anders Kristian; Dolven, Jane Karine Lønne; Ose, Randi Frida; Kristensen, Tom; Bjørklund, Kjell Rasmus & Shalchian-Tabrizi, Kamran (2010). Diversity of unculturable Radiolaria and their symbionts revealed by 18S rDNA phylogeny.
  • Dittami, Simon; Riisberg, Ingvild; John, Uwe; Orr, Russell; Shalchian-Tabrizi, Kamran; Jakobsen, Kjetill Sigurd & Edvardsen, Bente (2010). Analysis of expressed sequence tags from the ichtyotoxic dictyochophyte Pseudochattonella farcimen. Vis sammendrag
  • Olsen, Odd-Arne; Johansen, Wenche; Emilsen, Sidsel; Belova, Tatiana; Liang, Zhe; Smalås, Arne; Johnson, Ken; Helland, Ronny; Schrøder Leiros, Hanna-Kirsti; Jakobsen, Kjetill S.; Shalchian-Tabrizi, Kamran; Quatrano, Ralph; Cove, David; Perroud, Pierre-Francois; Dutcher, Susan; Wilson, Robert & Wilson, Robert (2010). Structural & functional significance of the DEK1 phytocalpain during land plant evolution from green algae.
  • Wilson, Robert; Perroud, Pierre-Francois; Johansen, Wenche; Liang, Zhe; Belova, Tatiana; Lorentzen, Marit; Jakobsen, Kjetill S.; Johnson, Ken; Brown, Roy; Lemmon, Betty; Cove, David; Shalchian-Tabrizi, Kamran; Quatrano, Ralph & Olsen, Odd-Arne (2010). Was the transmembrane-anchored DEK1 calpain key to the development of differentiated multicellular land plants?.
  • Dolven, Jane Karine Lønne; Bjørklund, Kjell Rasmus; Bråte, Jon; Krabberød, Anders Kristian; Klaveness, Dag & Shalchian-Tabrizi, Kamran (2009). Polycystina. Polycystine radiolarians. [www ].
  • Shalchian-Tabrizi, Kamran (2009). Bioportal Bioinformatics Service.
  • Patil, Vishwanath; Bråte, Jon; Klaveness, Dag; Kluge, Ragnhild; Shalchian-Tabrizi, Kamran; Gislerød, Hans Ragnar & Jakobsen, Kjetill Sigurd (2008). Molecular phylogeny of Hydrurus, a fresh water chrysophyte rich in lipids.
  • Minge, Marianne Aastebøl; Shalchian-Tabrizi, Kamran & Jakobsen, Kjetill Sigurd (2008). Chimeric proteomes: The plastid evolution of the green dinoflagellate Lepidodinium chlorophorum.
  • Minge, Marianne Aastebøl; Silberman, Jeffrey; Orr, Russell; Cavalier-Smith, Thomas; Shalchian-Tabrizi, Kamran; Burki, Fabien; Skjæveland, Åsmund & Jakobsen, Kjetill Sigurd (2008). Breviata anathema - an unusual Amoebozoa.
  • Shalchian-Tabrizi, Kamran (2008). Cross-colonisation of marine and freshwater in Telonemia, cryptomonads and Perkinsea.
  • Shalchian-Tabrizi, Kamran (2008, 09. juni). Dyrenes opprinnelse. [Internett].  Forskning.no.
  • Shalchian-Tabrizi, Kamran (2008, 27. juni). EVOLUTION: Building the Tree of Life, Genome by Genome.  Science Magazine.
  • Shalchian-Tabrizi, Kamran (2008, 12. desember). Ein portal å rekna med.  Uniforum, UiO.
  • Shalchian-Tabrizi, Kamran (2008). Phylogenomic analyses of the Tree Of Life, with focus on Telonemia.
  • Shalchian-Tabrizi, Kamran (2008). Telonemia - origin and diversity.
  • Shalchian-Tabrizi, Kamran; Minge, Marianne Aastebøl; Espelund, Mari; Orr, Russell; Ruden, Torgeir A.; Jakobsen, Kjetill Sigurd & Cavalier-Smith, Thomas (2008). The Choanozoan Ministeria vibrans: Multigene Phylogeny and the Origin of Animals. Vis sammendrag
  • Shalchian-Tabrizi, Kamran (2007, 22. januar). Brukarforum for bioinformatikk på Blindern.  IT-avisa, UiO.
  • Shalchian-Tabrizi, Kamran (2007, 06. desember). Livets tre har mistet en gren.  Apollon.
  • Stensrud, Øyvind; Schumacher, Trond; Shalchian-Tabrizi, Kamran; Svegården, Ingeborg Bjorvand & Kauserud, Håvard (2006). Accelerated evolution and profound AT bias among lineages of the medicinal fungus Cordyceps sinensis. Vis sammendrag
  • Shalchian-Tabrizi, Kamran (2006, 05. juli). Norske forskere finner ny livsform. [Internett].  Forsknin.no.
  • Edvardsen, Bente; Eikrem, Wenche; Shalchian-Tabrizi, Kamran; Riisberg, Ingvild; Johnsen, Geir; Naustvoll, Lars & Throndsen, Jahn (2005). Phylogeny of a new ichthyotoxic dictyochophyte forming blooms in the North Sea.
  • Gulden, Gro; Stensrud, Øyvind; Shalchian-Tabrizi, Kamran & Kauserud, Håvard (2005). Galerina Earle: A polyphyletic genus in the consortium of dark-spored agarics. Vis sammendrag

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Publisert 3. nov. 2010 15:32 - Sist endret 23. okt. 2013 17:08