Geir Kjetil Sandve

Bilde av Geir Kjetil Sandve
English version of this page
Telefon +47 22840861
Mobiltelefon +47 93853050
Rom 4420
Brukernavn
Besøksadresse Department of Informatics Ole-Johan Dahls hus Gaustadalléen 23B 0373 Oslo
Postadresse Postboks 1080 Blindern 0316 OSLO

Jeg er førsteamanuensis ved gruppe for Biomedisinsk Informatikk (BMI) ved Institutt for informatikk (IFI), Universitetet i Oslo (UiO).

Jeg forsker på statistisk og algoritmisk metodikk for stor-skala analyse av genomiske data. Som del av dette har jeg vært sentral utvikler av The Genomic HyperBrowser, som er et web-basert system med åpen kildekode for genomanalyse, publisert i 2010. Ambisjonene er å etablere oss som en sentral internasjonal aktør innen analyse av genomer.

Både min nåværende og tidligere forskning er mer utførlig beskrevet i den engelske versjonen av sida. I tillegg til forskning har jeg også gjennom årene vært mye engasjert i undervisning og veiledning.

Emneord: Genomanalyse, bioinformatikk, algoritmer, programmering, python, masteroppgave

Publikasjoner

  • du Pré, Fleur; Blazevski, Jana; Dewan, Alisa Elinsdatter; Stamnæs, Jorunn; Kanduri, Chakravarthi; Sandve, Geir Kjetil; Johannesen, Marie Kongshaug; Lindstad, Christian Borgen; Hnida, Kathrin; Fugger, Lars; Melino, Gerry; Qiao, Shuo-Wang & Sollid, Ludvig Magne (2020). B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2. Journal of Experimental Medicine.  ISSN 0022-1007.  217(2), s 1- 14 . doi: 10.1084/jem.20190860 Fulltekst i vitenarkiv.
  • Weber, Cédric R.; Akbar, Rahmad; Yermanos, Alexander; Pavlovic, Milena; Snapkov, Igor; Sandve, Geir Kjetil; Reddy, Sai T. & Greiff, Victor (2020). immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking. Bioinformatics.  ISSN 1367-4803. . doi: 10.1093/bioinformatics/btaa158
  • Brown, Alex; Snapkov, Igor; Akbar, Rahmad; Pavlovic, Milena; Miho, Enkelejda; Sandve, Geir Kjetil & Greiff, Victor (2019). Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires. Molecular Systems Design & Engineering.  ISSN 2058-9689.  4(4), s 701- 736 . doi: 10.1039/c9me00071b
  • Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit & Mathelier, Anthony (2019). A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research.  ISSN 0305-1048.  47(4), s e21 . doi: 10.1093/nar/gky1210 Fulltekst i vitenarkiv.
  • Grytten, Ivar; Rand, Knut Dagestad; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2019). Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes. PLoS Computational Biology.  ISSN 1553-734X.  15(2), s 1- 13 . doi: 10.1371/journal.pcbi.1006731 Fulltekst i vitenarkiv.
  • Kanduri, Srinivasa Kalyana Chakravarthi; Bock, Christoph; Gundersen, Sveinung; Hovig, Eivind & Sandve, Geir Kjetil (2019). Colocalization analyses of genomic elements: approaches, recommendations and challenges. Bioinformatics.  ISSN 1367-4803.  35(9), s 1615- 1624 . doi: 10.1093/bioinformatics/bty835 Fulltekst i vitenarkiv.
  • Salvatore, Stefania; Rand, Knut Dagestad; Grytten, Ivar; Ferkingstad, Egil; Domanska, Diana; Holden, Lars; Gheorghe, Marius; Mathelier, Anthony; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2019). Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis. Briefings in Bioinformatics.  ISSN 1467-5463.  s 1- 8 . doi: 10.1093/bib/bbz083 Vis sammendrag
  • Snir, Omri; Kanduri, Srinivasa Kalyana Chakravarthi; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil & Sollid, Ludvig Magne (2019). Transcriptional profiling of human intestinal plasma cells reveals effector functions beyond antibody production. United European Gastroenterology journal.  ISSN 2050-6406.  0(0), s 1- 9 . doi: 10.1177/2050640619862461
  • Domanska, Diana Ewa; Kanduri, Srinivasa Kalyana Chakravarthi; Simovski, Boris & Sandve, Geir Kjetil (2018). Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis. BMC Bioinformatics.  ISSN 1471-2105.  19(481) . doi: 10.1186/s12859-018-2438-1 Fulltekst i vitenarkiv.
  • Risnes, Louise Fremgaard; Christophersen, Asbjørn; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Sandve, Geir Kjetil; Sarna, Vikas Kumar; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang & Sollid, Ludvig Magne (2018). Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. Journal of Clinical Investigation.  ISSN 0021-9738.  128(6), s 2642- 2650 . doi: 10.1172/JCI98819 Fulltekst i vitenarkiv.
  • Simovski, Boris; Kanduri, Srinivasa Kalyana Chakravarthi; Gundersen, Sveinung; Titov, Dmytro; Domanska, Diana Ewa; Bock, Christoph; Bossini-Castillo, Lara; Chikina, Maria; Favorov, Alexander; Layer, Ryan M.; Mironov, Alexandre A.; Quinlan, Aaron R.; Sheffield, Nathan C.; Trynka, Gosia & Sandve, Geir Kjetil (2018). Coloc-stats: A unified web interface to perform colocalization analysis of genomic features. Nucleic Acids Research.  ISSN 0305-1048.  46(1), s W186- W193 . doi: 10.1093/nar/gky474 Fulltekst i vitenarkiv.
  • Yao, Ying; Zia, Asima; Wyrozemski, Lukasz Adam; Lindeman, Ida; Sandve, Geir Kjetil & Qiao, Shuo Wang (2018). Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. PLOS ONE.  ISSN 1932-6203.  13(12), s 1- 17 . doi: 10.1371/journal.pone.0208484 Fulltekst i vitenarkiv.
  • Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B.; Galashevskaya, Anastasia; Rada, Cristina; Sandve, Geir Kjetil; Rognes, Torbjørn; Krokan, Hans Einar & Nilsen, Hilde Loge (2017). Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. Scientific Reports.  ISSN 2045-2322.  7(1) . doi: 10.1038/s41598-017-07314-5 Fulltekst i vitenarkiv.
  • Domanska, Diana Ewa; Vodak, Daniel; Christin, Lund-Andersen; Salvatore, Stefania; Hovig, Eivind & Sandve, Geir Kjetil (2017). The rainfall plot: Its motivation, characteristics and pitfalls. BMC Bioinformatics.  ISSN 1471-2105.  18 . doi: 10.1186/s12859-017-1679-8 Vis sammendrag
  • Khelik, Ksenia; Lagesen, Karin; Sandve, Geir Kjetil; Rognes, Torbjørn & Nederbragt, Alexander Johan (2017). NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. BMC Bioinformatics.  ISSN 1471-2105.  18(1), s 1- 14 . doi: 10.1186/s12859-017-1748-z Fulltekst i vitenarkiv.
  • Rand, Knut Dagestad; Grytten, Ivar; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine & Sandve, Geir Kjetil (2017). Coordinates and intervals in graph-based reference genomes. BMC Bioinformatics.  ISSN 1471-2105.  18:263, s 1- 8 . doi: 10.1186/s12859-017-1678-9 Fulltekst i vitenarkiv.
  • Roy, Bishnudeo; Neumann, Ralf Stefan; Snir, Omri; Iversen, Rasmus; Sandve, Geir Kjetil; Lundin, Knut Erik Aslaksen & Sollid, Ludvig Magne (2017). High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease. Journal of Immunology.  ISSN 0022-1767.  199((2)), s 782- 791 . doi: 10.4049/jimmunol.1700169 Fulltekst i vitenarkiv.
  • Salvatore, Stefania; Domanska, Diana Ewa; Wood, Mollie; Nordeng, Hedvig Marie Egeland & Sandve, Geir Kjetil (2017). Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy. PLOS ONE.  ISSN 1932-6203.  12(12) . doi: 10.1371/journal.pone.0190101 Fulltekst i vitenarkiv.
  • Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn; Johansen, Morten; Mora Ortiz, Antonio Carlos; Lund-Andersen, Christin; Fromm, Bastian; Eskeland, Ragnhild; Gabrielsen, Odd Stokke; Ferkingstad, Egil; Nakken, Sigve; Bengtsen, Mads; Nederbragt, Alexander Johan; Thorarensen, Hildur Sif; Akse, Johannes Andreas; Glad, Ingrid Kristine; Hovig, Johannes Eivind & Sandve, Geir Kjetil (2017). GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience.  ISSN 2047-217X.  6(7), s 1- 12 . doi: 10.1093/gigascience/gix032 Fulltekst i vitenarkiv. Vis sammendrag
  • Børnich, Claus; Grytten, Ivar; Hovig, Johannes Eivind; Paulsen, Jonas; Cech, Martin & Sandve, Geir Kjetil (2016). Galaxy Portal: Interacting with the galaxy platform through mobile devices. Bioinformatics.  ISSN 1367-4803.  32(11), s 1743- 1745 . doi: 10.1093/bioinformatics/btw042
  • Rydbeck, Halfdan; Sandve, Geir Kjetil F.; Ferkingstad, Egil; Simovski, Boris; Rye, Morten Beck & Hovig, Johannes Eivind (2015). ClusTrack: Feature extraction and similarity measures for clustering of genome-wide data sets. PLOS ONE.  ISSN 1932-6203.  10(4) . doi: 10.1371/journal.pone.0123261 Fulltekst i vitenarkiv. Vis sammendrag
  • Bengtsen, Mads; Klepper, Kjetil; Gundersen, Sveinung; Cuervo Torre, Ignacio; Drabløs, Finn; Hovig, Johannes Eivind; Sandve, Geir Kjetil F.; Gabrielsen, Odd Stokke & Eskeland, Ragnhild (2015). c-Myb Binding Sites in Haematopoietic Chromatin Landscapes. PLOS ONE.  ISSN 1932-6203.  10(7) . doi: 10.1371/journal.pone.0133280 Fulltekst i vitenarkiv. Vis sammendrag
  • Ferkingstad, Egil; Holden, Lars & Sandve, Geir Kjetil F. (2015). Monte Carlo Null Models for Genomic Data. Statistical Science.  ISSN 0883-4237.  30(1), s 59- 71 . doi: 10.1214/14-STS484
  • Kraus, Hanne Irene; Sandve, Geir Kjetil F.; Schmitz, Martina; Dürst, Matthias & Hovig, Johannes Eivind (2015). Transcriptionally active regions are the preferred targets for chromosomal HPV integration in cervical carcinogenesis. PLOS ONE.  ISSN 1932-6203.  10(3) . doi: 10.1371/journal.pone.0119566
  • Mora Ortiz, Antonio Carlos; Sandve, Geir Kjetil; Gabrielsen, Odd Stokke & Eskeland, Ragnhild (2015). In the loop: promoter-enhancer interactions and bioinformatics. Briefings in Bioinformatics.  ISSN 1467-5463. . doi: 10.1093/bib/bbv097 Vis sammendrag
  • Ricigliano, Vito A. G.; Handel, Adam E; Sandve, Geir Kjetil F.; Annibali, Viviana; Ristori, Giovanni; Mechelli, Rosella; Cader, M.Zameel & Salvetti, Marco (2015). EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy. PLOS ONE.  ISSN 1932-6203.  10(4) . doi: 10.1371/journal.pone.0119605
  • Disanto, Giulio; Sandve, Geir Kjetil; Ricigliano, Vito AG; Pakpoor, Julia; Berlanga-Taylor, Antonio; Handel, Adam E; Kuhle, Jens; Holden, Lars; Watson, Corey T; Giovannoni, Gavin; Handunnetthi, Lahiru & Ramagopalan, Sreeram V (2014). DNase hypersensitive sites and association with multiple sclerosisxs. Human Molecular Genetics.  ISSN 0964-6906.  23(4), s 942- 948 . doi: 10.1093/hmg/ddt489 Vis sammendrag
  • Molyneux, Sam; Waterhouse, PD; Shelton, Dawne; Shao, Yang W; Watling, Christopher M; Tang, Qing-Lian; Harris, Isaac S; Dickson, Brendan C; Tharmapalan, Pirashaanthy; Sandve, Geir Kjetil F.; Zhang, Xiaoyang; Bailey, Swneke D; Berman, Hal; Wunder, Jay S; Iszvak, Zsuzsanna; Lupien, Mathieu; Mak, Tak W & Khokha, Rama (2014). Human somatic cell mutagenesis creates genetically tractable sarcomas. Nature Genetics.  ISSN 1061-4036.  46(9), s 964- 972 . doi: 10.1038/ng.3065
  • Paulsen, Jonas; Sandve, Geir Kjetil F.; Gundersen, Sveinung; Lien, Tonje Gulbrandsen; Trengereid, Kai & Hovig, Johannes Eivind (2014). HiBrowse: Multi-purpose statistical analysis of genome-wide chromatin 3D organization. Bioinformatics.  ISSN 1367-4803.  30(11), s 1620- 1622 . doi: 10.1093/bioinformatics/btu082 Fulltekst i vitenarkiv.
  • Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A & Drabløs, Finn (2014). Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. BMC Genomics.  ISSN 1471-2164.  15(1) . doi: 10.1186/1471-2164-15-120 Fulltekst i vitenarkiv.
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Johansen, Morten; Glad, Ingrid Kristine; Gunathasan, Krishanthi; Holden, Lars; Holden, Marit; Liestøl, Knut; Nygård, Ståle; Nygaard, Vegard; Paulsen, Jonas; Rydbeck, Halfdan; Trengereid, Kai; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Kalaš, Matúš; Lien, Tonje Gulbrandsen; Rye, Morten Beck; Frigessi, Arnoldo & Hovig, Johannes Eivind (2013). The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Research.  ISSN 0305-1048.  41(W1), s W133- W141 . doi: 10.1093/nar/gkt342 Fulltekst i vitenarkiv. Vis sammendrag
  • Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Berlanga-Taylor, Antonio; Gallone, Anna; Hanwell, Heather EC; Drabløs, Finn; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V (2013). Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. BMC Medicine.  ISSN 1741-7015.  11(163) . doi: 10.1186/1741-7015-11-163 Fulltekst i vitenarkiv.
  • Handel, Adam E; Sandve, Geir Kjetil; Disanto, Giulio; Handunnetthi, Lahiru; Giovannoni, Gavin & Ramagopalan, Sreeram V (2013). Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression. BMC Medical Genomics.  ISSN 1755-8794.  6:45 . doi: 10.1186/1755-8794-6-45
  • Paulsen, Jonas; Lien, Tonje Gulbrandsen; Sandve, Geir Kjetil; Holden, Lars; Borgan, Ørnulf; Glad, Ingrid Kristine & Hovig, Johannes Eivind (2013). Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements. Nucleic Acids Research.  ISSN 0305-1048.  41(10), s 5164- 5174 . doi: 10.1093/nar/gkt227 Vis sammendrag
  • Bruhn, Sören; Barrenäs, Fredrik; Mobini, R; Andersson, B; Chavali, S.; Egan, B. S.; Hovig, Eivind; Sandve, Geir Kjetil; Langston, M. A.; Rogers, Gary; Wang, H. & Benson, Mikael (2012). Increased expression of IRF4 and ETS1 in CD4(+) cells from patients with intermittent allergic rhinitis. Allergy. European Journal of Allergy and Clinical Immunology.  ISSN 0105-4538.  67(1), s 33- 40 . doi: 10.1111/j.1398-9995.2011.02707.x
  • Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Morahan, Julia; Dobson, Ruth; Giovannoni, Gavin & Ramagopalan, Sreeram V (2012). Genomic Regions Associated with Multiple Sclerosis Are Active in B Cells. PLOS ONE.  ISSN 1932-6203.  7(3) . doi: 10.1371/journal.pone.0032281
  • Disanto, Giulio; Sandve, Geir Kjetil; Berlanga-Taylor, Antonio; Ragnedda, Giammario; Morahan, Julia; Watson, Corey T; Giovannoni, Gavin; Ebers, Georg C & Ramagopalan, Sreeram V (2012). Vitamin D receptor binding, chromatin states and association with multiple sclerosis. Human Molecular Genetics.  ISSN 0964-6906.  21(16), s 3575- 3586 . doi: 10.1093/hmg/dds189
  • Watson, Corey T; Disanto, Giulio; Sandve, Geir Kjetil; Breden, Felix; Giovannoni, Gavin & Ramagopalan, Sreeram V (2012). Age-Associated Hyper-Methylated Regions in the Human Brain Overlap with Bivalent Chromatin Domains. PLOS ONE.  ISSN 1932-6203.  7(9) . doi: 10.1371/journal.pone.0043840
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit; Liestøl, Knut; Clancy, Trevor; Drabløs, Finn; Ferkingstad, Egil; Johansen, Morten; Nygaard, Vegard; Tøstesen, Eivind; Frigessi, Arnoldo & Hovig, Eivind (2011). The differential disease regulome. BMC Genomics.  ISSN 1471-2164.  12, s 353 . doi: 10.1186/1471-2164-12-353 Vis sammendrag
  • Gundersen, Sveinung; Kalaš, Matúš; Abul, Osman; Frigessi, Arnoldo; Hovig, Eivind & Sandve, Geir Kjetil (2011). Identifying elemental genomic track types and representing them uniformly. BMC Bioinformatics.  ISSN 1471-2105.  12 . doi: 10.1186/1471-2105-12-494
  • Sandve, Geir Kjetil Ferkingstad; Ferkingstad, Egil & Nygård, Ståle (2011). Sequential Monte Carlo multiple testing. Bioinformatics.  ISSN 1367-4803.  27(23), s 3235- 3241 . doi: 10.1093/bioinformatics/btr568
  • Sandve, Geir Kjetil; Gundersen, Sveinung; Rydbeck, Halfdan; Glad, Ingrid Kristine; Holden, Lars; Holden, Marit; Liestøl, Knut; Clancy, Trevor; Ferkingstad, Egil; Johansen, Morten; Nygaard, Vegard; Tøstesen, Eivind; Frigessi, Arnoldo & Hovig, Eivind (2010). The Genomic HyperBrowser: inferential genomics at the sequence level. Genome Biology.  ISSN 1465-6906.  11(12) . doi: 10.1186/gb-2010-11-12-r121 Fulltekst i vitenarkiv. Vis sammendrag
  • Tøstesen, Eivind; Sandve, Geir Kjetil; Liu, Fang & Hovig, Eivind (2009). Segmentation of DNA sequences into twostate regions and melting fork regions. Journal of Physics: Condensed Matter.  ISSN 0953-8984.  21(3) . doi: 10.1088/0953-8984/21/3/034109
  • Abul, Osman; Sandve, Geir Kjetil & Drabløs, Finn (2008). TScan: A two-step de novo motif discovery method. Series on Advances in Bioinformatics and Computational Biology.  ISSN 1751-6404.  8, s 19
  • Klepper, Kjetil; Sandve, Geir Kjetil; Abul, Osman; Johansen, Jostein & Drabløs, Finn (2008). Assessment of composite motif discovery methods. BMC Bioinformatics.  ISSN 1471-2105.  9(123) . doi: 10.1186/1471-2105-9-123 Fulltekst i vitenarkiv.
  • Lin, Tien-ho; Ray, Pradipta; Sandve, Geir Kjetil; Uguroglu, Selen & Xing, Eric P. (2008). BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes. Lecture Notes in Computer Science (LNCS).  ISSN 0302-9743.  4955, s 66- 81 . doi: 10.1007/978-3-540-78839-3_7
  • Sandve, Geir Kjetil; Abul, Osman & Drabløs, Finn (2008). Compo: composite motif discovery using discrete models. BMC Bioinformatics.  ISSN 1471-2105.  9, s 527 . doi: 10.1186/1471-2105-9-527
  • Sandve, Geir Kjetil; Abul, Osman & Drabløs, Finn (2008). Compo: composite motif discovery using discrete models. BMC Bioinformatics.  ISSN 1471-2105.  9(527) . doi: 10.1186/1471-2105-9-527 Fulltekst i vitenarkiv.
  • Abul, Osman; Sandve, Geir Kjetil & Drabløs, Finn (2007). False Discovery Rates in Identifying Functional DNA Motifs, In Jack Y. Yang (ed.),  Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering.  IEEE.  ISBN 978-1-4244-1509-0.  False Discovery Rates in Identifying Functional DNA Motifs.  s 387 - 394
  • Sandve, Geir Kjetil; Abul, Osman; Walseng, Vegard & Drabløs, Finn (2007). Improved benchmarks for computational motif discovery. BMC Bioinformatics.  ISSN 1471-2105.  8(193) . doi: 10.1186/1471-2105-8-193 Fulltekst i vitenarkiv.
  • Abul, Osman; Sandve, Geir Kjetil & Drabløs, Finn (2006). A Methodology for Motif Discovery Employing Iterated Cluster Re-assignment. Series on Advances in Bioinformatics and Computational Biology.  ISSN 1751-6404.  4, s 257- 268
  • Sandve, Geir Kjetil & Drabløs, Finn (2006). A survey of motif discovery methods in an integrated framework. Biology Direct.  ISSN 1745-6150.  1 . doi: 10.1186/1745-6150-1-11
  • Sandve, Geir Kjetil; Nedland, Magnar; Bø Syrstad, Øyvind; Eidsheim, Lars Andreas; Abul, Osman & Drabløs, Finn (2006). Accelerating Motif Discovery: Motif Matching on Parallel Hardware. Lecture Notes in Computer Science (LNCS).  ISSN 0302-9743.  4175, s 197- 206
  • Sandve, Geir Kjetil & Drabløs, Finn (2005). Generalized Composite Motif Discovery. Lecture Notes in Computer Science (LNCS).  ISSN 0302-9743.  3683, s 763 . doi: 10.1007/11553939

Se alle arbeider i Cristin

  • Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B.; Galashevskaya, Anastasia; Rada, Christina; Sandve, Geir Kjetil; Rognes, Torbjørn; Krokan, Hans Einar & Nilsen, Hilde Loge (2017). Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.
  • Holden, Lars; Jullum, Martin & Sandve, Geir Kjetil (2017). Statistical modeling of repertoire overlap in entire sampling spaces. NR-notat. SAMBA/13/2017. Vis sammendrag
  • Kanduri, Chakravarthi; Domanska, Diana; Hovig, Eivind & Sandve, Geir Kjetil (2017). Genome build information is an essential part of genomic track files. Genome Biology.  ISSN 1465-6906.  18(1) . doi: 10.1186/s13059-017-1312-1
  • Simovski, Boris; Drabløs, Finn Sverre; Gundersen, Sveinung; Johansen, Morten; Domanska, Diana Ewa; Azab, Abdulrahman; Sandve, Geir Kjetil & Hovig, Johannes Eivind (2016). The Genomic HyperBrowser.
  • Ferkingstad, Egil; Sandve, Geir Kjetil F. & Holden, Lars (2015). Monte Carlo null models for genomic data. Vis sammendrag
  • Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, Hideya; Carninci, Piero; Forrest, Alistair & Drabløs, Finn (2014). Chromatin data integrated with a human reference atlas of experimentally defined promoters reveal repressed promoters located in active chromatin.
  • Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, Hideya; Carninci, Piero; Forrest, Alistair & Drabløs, Finn (2014). Repressed promoters in active chromatin.
  • Tørresen, Ole Kristian; Jentoft, Sissel; Star, Bastiaan; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2014). A new, high quality reference genome assembly for Atlantic cod.
  • Tørresen, Ole Kristian; Walenz, Brian; Grove, Harald; Lien, Sigbjørn; Knight, James; Star, Bastiaan; Lagesen, Karin; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Klunderud, Ave Tooming; Miller, Jason Rafe; Jentoft, Sissel; Jakobsen, Kjetill Sigurd & Nederbragt, Alexander Johan (2014). A new, high quality reference genome assembly for Atlantic cod.
  • Ferkingstad, Egil; Holden, Lars & Sandve, Geir Kjetil (2013). Monte Carlo null models for genomic data.
  • Ferkingstad, Egil; Holden, Lars & Sandve, Geir Kjetil (2013). Monte Carlo null models in ecology. NR-notat. SAMBA/20/13. Vis sammendrag
  • Sandve, Geir Kjetil; Nekrutenko, Anton; Taylor, James & Hovig, Johannes Eivind (2013). Ten Simple Rules for Reproducible Computational Research. PLoS Computational Biology.  ISSN 1553-734X.  9(10) . doi: 10.1371/journal.pcbi.1003285
  • Sandve, Geir Kjetil (2008). Potentials and limitations of motif-based binding site prediction in DNA. Doktoravhandlinger ved NTNU. 239.
  • Sandve, Geir Kjetil; Abul, Osman; Walseng, Vegard & Drabløs, Finn (2007). Improved benchmarks for computational motif discovery.
  • Abul, Osman; Sandve, Geir Kjetil & Drabløs, Finn (2006). A Methodology for Motif Discovery Employing Iterated Cluster Re-assignment.
  • Sandve, Geir Kjetil (2006). Accelerating Motif Discovery: Motif Matching on Parallel Hardware.
  • Abul, Osman; Sandve, Geir Kjetil & Drabløs, Finn (2006). False discovery rates in identifying functional DNA motifs.
  • Abul, Osman; Sandve, Geir Kjetil & Drabløs, Finn (2006). TScan: A two-step de novo motif discovery method.
  • Sandve, Geir Kjetil; Nedland, Magnar; Bø Syrstad, Øyvind; Eidsheim, Lars Andreas; Abul, Osman & Drabløs, Finn (2006). Accelerating motif discovery: motif matching on parallel hardware.
  • Sandve, Geir Kjetil; Stenersen, Kristoffer; Walseng, Vegard; Lekang, Øystein; Klepper, Kjetil; Abul, Osman; Hveem, Tarjei S; Bratlie, Marit Skyrud & Drabløs, Finn (2006). An integrated approach to motif discovery in DNA sequences.
  • Sandve, Geir Kjetil & Drabløs, Finn (2005). Generalized Composite Motif Discovery.

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Publisert 4. nov. 2010 14:16 - Sist endret 27. nov. 2019 15:33